Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7661 cluster # 7661       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7661#0 length = 1992 sequences # 5  

consensusID : consensus_7661#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1992
fasta sequence
                              [GCGCTTAGGCTTAGCTAGTACTAATCATCATTAGTGTATAGCTAAGCTAGCTCCATTTCTTGCGCTTCTTGGTTTTGTCTGGGAACTATTGTATAGGTCTATATCGATCTCCATGGATGAGGTGTGGTGCAGCCTGGACAGCATGCCGGCCGACATCGCCGCCGGCATCCACCAGCCGCCGCCGCCCGACCTCCACGACCCCTCCTTCTGGCCGGCTTTCGCCGACTGTGCTGCGAGTTTCATCGCCGGCGGCGGCGGCGACAATGCGTGCTTCGACGAGCTCATGGCGGGAGGGTCGTCGGGTGACACTAGGATGGTGGCCATGGACGACGGCGACGACGGGAGTGGCTTCTTGGTGGGGGACGCCGAGGCCGAGCACCTGATGCTGTCGTCCTCGTCGCCGTCGTCGCTCTCCTCGGGCCGCTCCCTCTCCATCGACAGCGCCGGCTCCATGTCCTCCTTCTCGCTCGACGCCGCCGCGGCGCTGGCGATGTCGACCCTCGCCGTCCCGCACCCGTACCCGCCGCCCGTCGCGCACGGCATGTTCGCCTCCGGCGACGGTGGCGGCGGCGGCGGCGGCGCAGTCGACGACCACGAGGACGCCATCATGCGTGCCATGATGGCCGTCATCTCCTCCGCCTCGGCCTCCCCCTCCTCCTCGGGCGGCTCCGCCTCCTCGCCCACCCCGTTCAGCCGGGACAGCGGCGCGCACCACCAGCCTGCAGGTCAGCCAGCCATGGCGGCGCCGCAGCAGCCGCGTGGAGGGAACGGCGGCCACGTGGTGGTGAAGAGCAGCAGCAGCAGCGGCGGCCTCGCCGTGCCGATGGATCAGAAGCCCGGCGGCGGCGGGCGGGGACGGCAGCAGGAGGAGGCGGCGGCGGCGAGCGCCACCAACAGCAGCCAGCTCTACCACATGATGTCGGAGAGGAAGAGGAGGGAGAAGCTCAACGACAGCTTCCACACGCTCAGATCACTCCTCCCACCTTGCTCCAAGAAGGACAAGACGACGGTGCTGATCAACGCGGCCAAGTACCTCAAGTCGCTGGAGACGGAGATCACGGAGCTGGAAGGGACGAACACGAAGCTGGAGAAGCACATCGCCGGCGGCGGCGGCGCGGCGGACGCCGCCATGAGGGCTCGCCGGGCGCAGCAGAGGGCCAAGGTGCAGATCAGCAAGGCGGCGGACTCGCAGTCGCAGCAGCTGGTGAGCCTGACGGTGATGGTGA-TGGTGGAGTGC--G-ACG-TGGT-GGAGCTGGTGCT-CCAC-ATCCTGGAAT-GCCTC--AGGT-GGATG-AAGG-AGATCAGCGTGCTGTCCGTCTACGCCGACACCTACTCGCCGCAGCTTCTTCTCAAGGCCATCGCCAACATCAAGCTCCAGATCGTGGGAGGAGATTGGAACGAGGCGTCGTTCCA--CGAGGCGATGACGAAGGCGGCGAACGACGCGACCA-TTTCCTGCGCCCCGCTCGCGATCACGGCAGCAC-AGTGATTGCTGATTAGTGAGTGATTAGCAGCGAGCGGCGGCGGTGGCGACCTACCGGTTAATTCAATCCATCCTCATCGTCCTCGCGCGCGTGCAGTCATGGTTGAACGTTGAA-GCAGTAAAAAAAATATTTATGTATGGAGGGCGATGGGTTCGCTACGTCATAACCGATCTCAATAGTTGGAGGAGGAAAACGAGGACAATTCAAATACTTCGAGAGTGGGGAAGAATATTGTTAGATATATATTAGGGTTTGGTTATTCATTCCTTTTTCCGTCTTAAAATATAATAAGTTTTGATGATGTATAAACATGTATAAATATATAGCTAAAAGTTATTATATTTTAGGACGGTGATAGTAATTACGTAGCGTATTTTTCAGGTGTGCCCTAGTTGCAGCCGCAAGCTAGGTTGCAGACGATGGTGCTTTAGTAGCGCTAGCCTAGCTAGTATAGGTATATGTATATGTATATCTCTATGTATATACATGCATGGTGGTGGTTTTGAGTGATTGTTAAAAA]

[+] EMBL AK106333             [GCGCTTAGGCTTAGCTAGTACTAATCATCATTAGTGTATAGCTAAGCTAGCTCCATTTCTTGCGCTTCTTGGTTTTGTCTGGGAACTATTGTATAGGTCTATATCGATCTCCATGGATGAGGTGTGGTGCAGCCTGGACAGCATGCCGGCCGACATCGCCGCCGGCATCCACCAGCCGCCGCCGCCCGACCTCCACGACCCCTCCTTCTGGCCGGCTTTCGCCGACTGTGCTGCGAGTTTCATCGCCGGCGGCGGCGGCGACAATGCGTGCTTCGACGAGCTCATGGCGGGAGGGTCGTCGGGTGACACTAGGATGGTGGCCATGGACGACGGCGACGACGGGAGTGGCTTCTTGGTGGGGGACGCCGAGGCCGAGCACCTGATGCTGTCGTCCTCGTCGCCGTCGTCGCTCTCCTCGGGCCGCTCCCTCTCCATCGACAGCGCCGGCTCCATGTCCTCCTTCTCGCTCGACGCCGCCGCGGCGCTGGCGATGTCGACCCTCGCCGTCCCGCACCCGTACCCGCCGCCCGTCGCGCACGGCATGTTCGCCTCCGGCGACGGTGGCGGCGGCGGCGGCGGCGCAGTCGACGACCACGAGGACGCCATCATGCGTGCCATGATGGCCGTCATCTCCTCCGCCTCGGCCTCCCCCTCCTCCTCGGGCGGCTCCGCCTCCTCGCCCACCCCGTTCAGCCGGGACAGCGGCGCGCACCACCAGCCTGCAGGTCAGCCAGCCATGGCGGCGCCGCAGCAGCCGCGTGGAGGGAACGGCGGCCACGTGGTGGTGAAGAGCAGCAGCAGCAGCGGCGGCCTCGCCGTGCCGATGGATCAGAAGCCCGGCGGCGGCGGGCGGGGACGGCAGCAGGAGGAGGCGGCGGCGGCGAGCGCCACCAACAGCAGCCAGCTCTACCACATGATGTCGGAGAGGAAGAGGAGGGAGAAGCTCAACGACAGCTTCCACACGCTCAGATCACTCCTCCCACCTTGCTCCAAGAAGGACAAGACGACGGTGCTGATCAACGCGGCCAAGTACCTCAAGTCGCTGGAGACGGAGATCACGGAGCTGGAAGGGACGAACACGAAGCTGGAGAAGCACATCGCCGGCGGCGGCGGCGCGGCGGACGCCGCCATGAGGGCTCGCCGGGCGCAGCAGAGGGCCAAGGTGCAGATCAGCAAGGCGGCGGACTCGCAGTCGCAGCAGCTGGTGAGCCTGACGGTGATGGTGA TGGTGGAGTGC  G ACG TGGT GGAGCTGGTGCT CCAC ATCCTGGAAT GCCTC  AGGT GGATG AAGG AGATCAGCGTGCTGTCCGTCTACGCCGACACCTACTCGCCGCAGCTTCTTCTCAAGGCCATCGCCAACATCAAGCTCCAGATCGTGGGAGGAGATTGGAACGAGGCGTCGTTCCA  CGAGGCGATGACGAAGGCGGCGAACGACGCGACCA TTTCCTGCGCCCCGCTCGCGATCACGGCAGCAC AGTGATTGCTGATTAGTGAGTGATTAGCAGCGAGCGGCGGCGGTGGCGACCTACCGGTTAATTCAATCCATCCTCATCGTCCTCGCGCGCGTGCAGTCATGGTTGAACGTTGAA GCAGTAAAAAAAATATTTATGTATGGAGGGCGATGGGTTCGCTACGTCATAACCGATCTCAATAGTTGGAGGAGGAAAACGAGGACAATTCAAATACTTCGAGAGTGGGGAAGAATATTGTTAGATATATATTAGGGTTTGGTTATTCATTCCTTTTTCCGTCTTAAAATATAATAAGTTTTGATGATGTATAAACATGTATAAATATATAGCTAAAAGTTATTATATTTTAGGACGGTGATAGTAATTACGTAGCGTATTTTTCAGGTGTGCCCTAGTTGCAGCCGCAAGCTAGGTTGCAGACGATGGTGCTTTAGTAGCGCTAGCCTAGCTAGTATAGGTATATGTATATGTATATCTCTATGTATATACATGCATGGTGGTG                     ]
[+] EMBL C25973               [                                  TGTATAGCTAAGCTAGCTCCATTTCTTGCGCTTCTTGGTTTTGTCTGGGAACTATTGTATAGGTCTATATCGATCTCCATGGATGAGGTGTGGTGCAGCCTGGACAGCATGCCGGCCGACATCGCCGCCGGNATCCACCAGCCGCCGCCGCCCGACCTCCACGACCCCTCCTTCTGGCCGGCTTTCGCCGACTGTGCTGCGAGTTTCATCGCCGGCGGGGGCGGCGACAATACGTGTTTCGACGAGCTCATGGCGGGAGGGTCGTCGGGTGACACTAGGATGGTGGNCATGGACGACGGCGACGACGGGAGTGGCTTCTTTGTGGGGGACGCCGAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB640876             [                                         CTAAGCTAGCTCCATTTCTTGCGCTTCTTGGTTTTGTCTGGGAACTATTGTATAGGTCTATATCGATCTCCATGGATGAGGTGTGGTGCAGCCTGGACAGCATGCCGGCCGACATCGCCGCCGGCATCCACCAGCCGCCGCCGCCCGACCTCCACGACCCCTCCTTCTGGCCGGCTTTCGCCGACTGTGCTGCGAGCTTCATCGCCGGCGGCGGCGGCGACAATGCGTGCTTCGACGAGCTCATGGCGGGAGGGTCGTCGGGTGACACTAGGATGGTGGCCATGGACGACGGCGACGACGGGAGTGGCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM038927             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tgtATGGTAATTGGTGGAGTGCCAGAACGTTGGTGGGACCTGGTGCTCCCACAATCCTGGAATCCCCTCCAAGGTGGGATGAAAGGNAGATCAGC  GCTTCCCGTTTACCCGGACACCTACTC CC CA CTTCTTCTCAAGGCCATCGCCAACATCAAGCTCCAGATC TGGGAGGAGATTGGAACGAGGCGTCGTTCCACNCGAGGCGATGACGAAGGCGGCGAACGACGCGACCACTTTCCAGCGCCCCGCTCGCGATCACGGCAGCACNNGTGATTGCTGATTAGTGAGTGATTAGCAGCGAGCGGCGGCGGTGGCGACCTACCGGTTAATTCAATCCATCCTCATCGTCCTCGCGCGCGTGCAGTCATGGTTGAACGTTGAACCCAGTAAAAAAAATATTTATGTATGGAGGGCGATGGGTTCGCTACGTCATAACCGATCTCCATAGTTGGAGGAGGAAAACGAGGCCCATTCCAATACTTCGAGAGTGGGGAAGAATATTGTTAGATATATATTAGGGTTTGGTTATTCATTCCTTTTTCCGTCTTAAAATATAATAAGTTTTGATGATGTATAAACATGTATAAATATATAGCTAAAAGTTATTATATTTTAaaaaaaaaa                                                                                                                                                                     ]
[+] EMBL AU078741             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTCAANTACTTCGAGAGTGGGGAAGAATATTGTTAGATATATATTAGGGTTTGGTTATTCATTCCTTTNTCCGTCTTACAATATAATAAGTTTTGATGATGTATAAACATGTATAAATATATAGCTAAAAGTTATTATATTTTAGGACGGTGATAGTAATTACGTAGCGTATTTTTCAGGTGTGCCCTAGTTGCAGCCGCAAGCTAGGTTGCAGNNGATGGTGCTTTAGTAGCGCTAGCCTAGCTAGTATAGGTATATGTATATGTATATNTCTATGTATATACATGCATGGTGGTGGTTTTGAGTGATTGTTAAAAA]


>consensus_7661#0 GCGCTTAGGCTTAGCTAGTACTAATCATCATTAGTGTATAGCTAAGCTAGCTCCATTTCT TGCGCTTCTTGGTTTTGTCTGGGAACTATTGTATAGGTCTATATCGATCTCCATGGATGA GGTGTGGTGCAGCCTGGACAGCATGCCGGCCGACATCGCCGCCGGCATCCACCAGCCGCC GCCGCCCGACCTCCACGACCCCTCCTTCTGGCCGGCTTTCGCCGACTGTGCTGCGAGTTT CATCGCCGGCGGCGGCGGCGACAATGCGTGCTTCGACGAGCTCATGGCGGGAGGGTCGTC GGGTGACACTAGGATGGTGGCCATGGACGACGGCGACGACGGGAGTGGCTTCTTGGTGGG GGACGCCGAGGCCGAGCACCTGATGCTGTCGTCCTCGTCGCCGTCGTCGCTCTCCTCGGG CCGCTCCCTCTCCATCGACAGCGCCGGCTCCATGTCCTCCTTCTCGCTCGACGCCGCCGC GGCGCTGGCGATGTCGACCCTCGCCGTCCCGCACCCGTACCCGCCGCCCGTCGCGCACGG CATGTTCGCCTCCGGCGACGGTGGCGGCGGCGGCGGCGGCGCAGTCGACGACCACGAGGA CGCCATCATGCGTGCCATGATGGCCGTCATCTCCTCCGCCTCGGCCTCCCCCTCCTCCTC GGGCGGCTCCGCCTCCTCGCCCACCCCGTTCAGCCGGGACAGCGGCGCGCACCACCAGCC TGCAGGTCAGCCAGCCATGGCGGCGCCGCAGCAGCCGCGTGGAGGGAACGGCGGCCACGT GGTGGTGAAGAGCAGCAGCAGCAGCGGCGGCCTCGCCGTGCCGATGGATCAGAAGCCCGG CGGCGGCGGGCGGGGACGGCAGCAGGAGGAGGCGGCGGCGGCGAGCGCCACCAACAGCAG CCAGCTCTACCACATGATGTCGGAGAGGAAGAGGAGGGAGAAGCTCAACGACAGCTTCCA CACGCTCAGATCACTCCTCCCACCTTGCTCCAAGAAGGACAAGACGACGGTGCTGATCAA CGCGGCCAAGTACCTCAAGTCGCTGGAGACGGAGATCACGGAGCTGGAAGGGACGAACAC GAAGCTGGAGAAGCACATCGCCGGCGGCGGCGGCGCGGCGGACGCCGCCATGAGGGCTCG CCGGGCGCAGCAGAGGGCCAAGGTGCAGATCAGCAAGGCGGCGGACTCGCAGTCGCAGCA GCTGGTGAGCCTGACGGTGATGGTGATGGTGGAGTGCGACGTGGTGGAGCTGGTGCTCCA CATCCTGGAATGCCTCAGGTGGATGAAGGAGATCAGCGTGCTGTCCGTCTACGCCGACAC CTACTCGCCGCAGCTTCTTCTCAAGGCCATCGCCAACATCAAGCTCCAGATCGTGGGAGG AGATTGGAACGAGGCGTCGTTCCACGAGGCGATGACGAAGGCGGCGAACGACGCGACCAT TTCCTGCGCCCCGCTCGCGATCACGGCAGCACAGTGATTGCTGATTAGTGAGTGATTAGC AGCGAGCGGCGGCGGTGGCGACCTACCGGTTAATTCAATCCATCCTCATCGTCCTCGCGC GCGTGCAGTCATGGTTGAACGTTGAAGCAGTAAAAAAAATATTTATGTATGGAGGGCGAT GGGTTCGCTACGTCATAACCGATCTCAATAGTTGGAGGAGGAAAACGAGGACAATTCAAA TACTTCGAGAGTGGGGAAGAATATTGTTAGATATATATTAGGGTTTGGTTATTCATTCCT TTTTCCGTCTTAAAATATAATAAGTTTTGATGATGTATAAACATGTATAAATATATAGCT AAAAGTTATTATATTTTAGGACGGTGATAGTAATTACGTAGCGTATTTTTCAGGTGTGCC CTAGTTGCAGCCGCAAGCTAGGTTGCAGACGATGGTGCTTTAGTAGCGCTAGCCTAGCTA GTATAGGTATATGTATATGTATATCTCTATGTATATACATGCATGGTGGTGGTTTTGAGT GATTGTTAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)