These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7665#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 979 fasta sequence [CAGAAGATGATGCTGCAGTGATCCCGTCCACTAGCTGGTGAATTGGAGAGACGGATGGAGCTCGAGCTCGGCCTCAGGCTCGCGCTGCCGTCGCCGTCGCCGTCGCCGGCGACGGCGACGGCGGCTGGGAGTGAGCTTGACCTTCTCAACAGCGCGCCGGGGTCCTGCCGCAAGAGGGGCTTCGAGGAGGCGCTCGGTGGGTTCAAAACCGACGACGACAACGACGACGGCAATGGCCGCGGCGGTGACGGCGATTCCGACGGCGAAATGGGCAACAAGAGGAGGAAGCTGGTGGGGTGGCCACCGGTGAAGTGCTTGCACCGGCGGCGCGACGGTGGCTGCGGTGGCGGATATGTGAAGGTGAAGATGGAGGGGTTGGCCATCGGGAGGAAGCTGGACTTGTCCATCCTCGGCTCATACGCTGAGCTGCTCGACACGCTCCACCTTATGTTCCCCTCCACTAACCAAGAGGATGGGCACGATCGTCGTCGACGTCACCCATACGCTGTCACCTACGAGGATGGGGAAGGAGACTGGATGCAGGTCGGAGACGTGCCATGGGAGGCCTTTGCCAAGTCGGTGAAACGGCTCAAGATACTGGTGTAACTGACTGCAAATTAAGCTACTAGTACTAGTCTTTACTACTTCGAATAAAATTGTACGTGAACGGGATTATTTTGTTCACGTTTCTCTCATCATAAATGTGTAGTGTTTCAGCAATTTCATAAGCATGACGAATGAAATCTCGTAGCTGTTGTCATCAATCACCTTGCATTTCGTGTCAAACTACATCTGTGGCCAGCGCACAGTAGTGTTAGTATAGTGTACACCGTAGAGTCACCTCGCTGTGATCAGCACGTGCATGCATCTGTATAATACACCGCCACATATGCACAGGATGGTACTGAATACTGAGCATATCCTGTACGGGGAGTTCAGATATGGGTGTTATGGCCTACCAAAGTGAATCTTATCACAT] [+] EMBL AK102541 [CAGAAGATGATGCTGCAGTGATCCCGTCCACTAGCTGGTGAATTGGAGAGACGGATGGAGCTCGAGCTCGGCCTCAGGCTCGCGCTGCCGTCGCCGTCGCCGTCGCCGGCGACGGCGACGGCGGCTGGGAGTGAGCTTGACCTTCTCAACAGCGCGCCGGGGTCCTGCCGCAAGAGGGGCTTCGAGGAGGCGCTCGGTGGGTTCAAAACCGACGACGACAACGACGACGGCAATGGCCGCGGCGGTGACGGCGATTCCGACGGCGAAATGGGCAACAAGAGGAGGAAGCTGGTGGGGTGGCCACCGGTGAAGTGCTTGCACCGGCGGCGCGACGGTGGCTGCGGTGGCGGATATGTGAAGGTGAAGATGGAGGGGTTGGCCATCGGGAGGAAGCTGGACTTGTCCATCCTCGGCTCATACGCTGAGCTGCTCGACACGCTCCACCTTATGTTCCCCTCCACTAACCAAGAGGATGGGCACGATCGTCGTCGACGTCACCCATACGCTGTCACCTACGAGGATGGGGAAGGAGACTGGATGCAGGTCGGAGACGTGCCATGGGAGGCCTTTGCCAAGTCGGTGAAACGGCTCAAGATACTGGTGTAACTGACTGCAAATTAAGCTACTAGTACTAGTCTTTACTACTTCGAATAAAATTGTACGTGAACGGGATTATTTTGTTCACGTTTCTCTCATCATAAATGTGTAGTGTTTCAGCAATTTCATAAGCATGACGAATGAAATCTCGTAGCTGTTGTCATCAATCACCTTGCATTTCGTGTCAAACTACATCTGTGGCCAGCGCACAGTAGTGTTAGTATAGTGTACACCGTAGAGTCACCTCGCTGTGATCAGCACGTGCATGCATCTGTATAATACACCGCCACATATGCACAGGATGGTACTGAATACTGAGCATATCCTGTACGGGGAGTTCAGATATGGGTGTTATGGCCTACCAAAGTGAATCTTATCACAT] consensusID : consensus_7665#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 332 fasta sequence [AGCTGGTGAATTGGAGAGACGGATGGAGCTCGAGCTCGGCCTCAGGCTCGCGCTGCCGTCNCCGTCNNCGTCGCCGGCGAGCGGTCNTTGGNGNGNANGNTGNANGCTNTGACCTTTCTCAACAGCGCGCCGGGGTCCTGCCGCAAGAGGGGCTTCGAGGAGGCGCTCGGTGGGTTCAAAACCGACGACGACAACGACGACGGCAATGGCCGCGGCGGTGACGNCGATTCCGACGGCGAAATGGGCAACAAGAGGAGGAAGCTGGTGGGGTGGNCACCGGTGAAGTGCTTTCACCGGCGNCGCGACGGTGGCTTNCGGTGGCGGATATGTGA] [+] EMBL OSS4339A [AGCTGGTGAATTGGAGAGACGGATGGAGCTCGAGCTCGGCCTCAGGCTCGCGCTGCCGTCNCCGTCNNCGTCGCCGGCGAGCGGTCNTTGGNGNGNANGNTGNANGCTNTGACCTTTCTCAACAGCGCGCCGGGGTCCTGCCGCAAGAGGGGCTTCGAGGAGGCGCTCGGTGGGTTCAAAACCGACGACGACAACGACGACGGCAATGGCCGCGGCGGTGACGNCGATTCCGACGGCGAAATGGGCAACAAGAGGAGGAAGCTGGTGGGGTGGNCACCGGTGAAGTGCTTTCACCGGCGNCGCGACGGTGGCTTNCGGTGGCGGATATGTGA] consensusID : consensus_7665#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 270 fasta sequence [GATGCAGGTCGGAGACGTGCCATGGGAGGCCTTTGCCAAGTCGGTGNAACGGCTCAAGATACTGGTGTAACTGACTGCAAATTAAGCTACTAGTACTAGTCTTTACTACTTCGAATAAAATTGTACGTGAACGGGATTATTTTGTTCACGTTTCTCTCATCATAAATGTGTAGTGTTTCAGCAATTTCATAAGCATGACGAATGAAATCTCGTAGCTGTTGTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU033170 [GATGCAGGTCGGAGACGTGCCATGGGAGGCCTTTGCCAAGTCGGTGNAACGGCTCAAGATACTGGTGTAACTGACTGCAAATTAAGCTACTAGTACTAGTCTTTACTACTTCGAATAAAATTGTACGTGAACGGGATTATTTTGTTCACGTTTCTCTCATCATAAATGTGTAGTGTTTCAGCAATTTCATAAGCATGACGAATGAAATCTCGTAGCTGTTGTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF328094 [ TTTCAGCAATTTCATAAGCATGACGAATGAAATCTCGTAGCTGTTGTCATCAAAAAAAAAAAAAAAAAAAA ] [-] EMBL CF328093 [ TTCAGCAATTTCATAAGCATGACGAATGAAATTTCGTAGCTGTTGTCATCAAAAAAAAAAAAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7665#0 CAGAAGATGATGCTGCAGTGATCCCGTCCACTAGCTGGTGAATTGGAGAGACGGATGGAG 60 consensus_7665#1 --------------------------------AGCTGGTGAATTGGAGAGACGGATGGAG 28 consensus_7665#2 ------------------------------------GATGCAGGTCGGAGACG--TGCCA 22 * ** * ****** ** consensus_7665#0 CTCGAGCTCGGCCTCAGGCTCGCGCTGCCGTCGCCGTCGCCGTCGCCGGCGA-CGGCGAC 119 consensus_7665#1 CTCGAGCTCGGCCTCAGGCTCGCGCTGCCGTCNCCGTCNNCGTCGCCGGCGAGCGGTCNT 88 consensus_7665#2 TGGGAGGCCTTTGCCAAGTCGGTGNAACGGCTCAAGATACTGGTGTAACTGACTGCAAAT 82 *** * ** * * * * * * * * ** * consensus_7665#0 GGCGGCTGGGAGTGAGC---TTG--ACCTT-CTCAACAGCGCGC-----CGGGGTCCTGC 168 consensus_7665#1 TGGNGNGNANGNTGNANGCTNTG--ACCTTTCTCAACAGCGCGC-----CGGGGTCCTGC 141 consensus_7665#2 TAAGCTACTAGTACTAGTCTTTACTACTTCGAATAAAATTGTACGTGAACGGGATTATTT 142 * ** * ** * * * **** * * consensus_7665#0 CGCAAGAGGGGCTTCGAGGAGGCGCTCGGTGGGTTCAAAACCGACGACGACAACGACGAC 228 consensus_7665#1 CGCAAGAGGGGCTTCGAGGAGGCGCTCGGTGGGTTCAAAACCGACGACGACAACGACGAC 201 consensus_7665#2 TGTTCACGTTTCTCTCATCATAAATGTGTAGTGTTTCAGCAATTTCATAAGCATGACGAA 202 * * ** * * * * *** * * * * ***** consensus_7665#0 GGCAATGGCCGCGGCGGTGACGGCGATTCCGACGGCGAAATGGGCAACAAGAGGAGGAAG 288 consensus_7665#1 GGCAATGGCCGCGGCGGTGACGNCGATTCCGACGGCGAAATGGGCAACAAGAGGAGGAAG 261 consensus_7665#2 TGAAATCTCGTAGCTGTTGTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 262 * *** * * * ** * * * * *** ** ** * * ** consensus_7665#0 CTGGTGGGGTGGCCACCGGTGAAGTGCTTGCACCGGCGGCGCGACGGTGGCT-GCGGTGG 347 consensus_7665#1 CTGGTGGGGTGGNCACCGGTGAAGTGCTTTCACCGGCGNCGCGACGGTGGCTTNCGGTGG 321 consensus_7665#2 AAAAAAAA---------------------------------------------------- 270 consensus_7665#0 CGGATATGTGAAGGTGAAGATGGAGGGGTTGGCCATCGGGAGGAAGCTGGACTTGTCCAT 407 consensus_7665#1 CGGATATGTGA------------------------------------------------- 332 consensus_7665#2 ------------------------------------------------------------ consensus_7665#0 CCTCGGCTCATACGCTGAGCTGCTCGACACGCTCCACCTTATGTTCCCCTCCACTAACCA 467 consensus_7665#1 ------------------------------------------------------------ consensus_7665#2 ------------------------------------------------------------ consensus_7665#0 AGAGGATGGGCACGATCGTCGTCGACGTCACCCATACGCTGTCACCTACGAGGATGGGGA 527 consensus_7665#1 ------------------------------------------------------------ consensus_7665#2 ------------------------------------------------------------ consensus_7665#0 AGGAGACTGGATGCAGGTCGGAGACGTGCCATGGGAGGCCTTTGCCAAGTCGGTGAAACG 587 consensus_7665#1 ------------------------------------------------------------ consensus_7665#2 ------------------------------------------------------------ consensus_7665#0 GCTCAAGATACTGGTGTAACTGACTGCAAATTAAGCTACTAGTACTAGTCTTTACTACTT 647 consensus_7665#1 ------------------------------------------------------------ consensus_7665#2 ------------------------------------------------------------ consensus_7665#0 CGAATAAAATTGTACGTGAACGGGATTATTTTGTTCACGTTTCTCTCATCATAAATGTGT 707 consensus_7665#1 ------------------------------------------------------------ consensus_7665#2 ------------------------------------------------------------ consensus_7665#0 AGTGTTTCAGCAATTTCATAAGCATGACGAATGAAATCTCGTAGCTGTTGTCATCAATCA 767 consensus_7665#1 ------------------------------------------------------------ consensus_7665#2 ------------------------------------------------------------ consensus_7665#0 CCTTGCATTTCGTGTCAAACTACATCTGTGGCCAGCGCACAGTAGTGTTAGTATAGTGTA 827 consensus_7665#1 ------------------------------------------------------------ consensus_7665#2 ------------------------------------------------------------ consensus_7665#0 CACCGTAGAGTCACCTCGCTGTGATCAGCACGTGCATGCATCTGTATAATACACCGCCAC 887 consensus_7665#1 ------------------------------------------------------------ consensus_7665#2 ------------------------------------------------------------ consensus_7665#0 ATATGCACAGGATGGTACTGAATACTGAGCATATCCTGTACGGGGAGTTCAGATATGGGT 947 consensus_7665#1 ------------------------------------------------------------ consensus_7665#2 ------------------------------------------------------------ consensus_7665#0 GTTATGGCCTACCAAAGTGAATCTTATCACAT 979 consensus_7665#1 -------------------------------- consensus_7665#2 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||