cluster # 7668

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Oryza sativa
cluster # 7668 cluster # 7668 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7668#0 length = 780 sequences # 4

consensus_7668#1 length = 109 sequences # 1

consensusID : consensus_7668#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 780
fasta sequence

                              [CGTGACCTCGTCAAGTCCTCAGCTCTCGTTTGGCATCCAAAGAAGAATTAGGTGTTATTACTAGGGTTTAGAGAGGTGTTGATTACTAGGGTTTAGAGAGGGAAAGGAAGGGAAGGGCTATGGCGGCGCCGTGGTGGGACTCGGAGTACAAGGACCGCTCCTCGCTGGAGTACCGCGTGTACGTCGGCAACCTGCCCTACTCCGTCGACGAGCAAACCCTCATGGACTACTTCGCCGACTACGGCGCCATCAGTGCCGAGATCGCTTGGGACAGTGAGATGGGGAGGCCACGC-GGGTTCGGGTTCGTCAACTTCGAGGACAACGAGTC-GGTGAACGCCGCCATCCACGGCATGAAC-GGCCAGGACATCGGCGGCCGCAAGGTCACCGTCGCGCGGGCCCAGATGCGCCCCCGCCGCTGGAGGGCGTGACCGCGCCGCCGGCGGACGGCCGGCCGGCGGCGAGGAGGTCGACCTGGATGAGCGGAGAAGACTCTACCTACCTACCTACCCTAAGCTATCTATGCTGCAGATCTACTAGCTAGTTTTAGTCATTCGTCGTGTTGGTAGTTTGGTTAATTAGGGTTTAAGCGGTGGATGCTTAATTAATTAATCAGTCTCTGTTGGTAATCTCCTGGATATGCAAGCTTAGGGCCTTATTAGGATATGTTGTTTAATTAGGTGTGTGTTTATGCTTGTAATCATCAATTGCAGTCTGCACTCTGCAGCACGTACCTGAGTGTGTGTAAGTTTGATGGCTAGCGTTTATGTTAAGAATGACTCT]

[+] EMBL AK069616             [CGTGACCTCGTCAAGTCCTCAGCTCTCGTTTGGCATCCAAAGAAGAATTAGGTGTTATTACTAGGGTTTAGAGAGGTGTTGATTACTAGGGTTTAGAGAGGGAAAGGAAGGGAAGGGCTATGGCGGCGCCGTGGTGGGACTCGGAGTACAAGGACCGCTCCTCGCTGGAGTACCGCGTGTACGTCGGCAACCTGCCCTACTCCGTCGACGAGCAAACCCTCATGGACTACTTCGCCGACTACGGCGCCATCAGTGCCGAGATCGCTTGGGACAGTGAGATGGGGAGGCCACGC GGGTTCGGGTTCGTCAACTTCGAGGACAACGAGTC GGTGAACGCCGCCATCCACGGCATGAAC GGCCAGGACATCGGCGGCCGCAAGGTCACCGTCGCGCGGGCCCAGATGCGCCCCCGCCGCTGGAGGGCGTGACCGCGCCGCCGGCGGACGGCCGGCCGGCGGCGAGGAGGTCGACCTGGATGAGCGGAGAAGACTCTACCTACCTACCTACCCTAAGCTATCTATGCTGCAGATCTACTAGCTAGTTTTAGTCATTCGTCGTGTTGGTAGTTTGGTTAATTAGGGTTTAAGCGGTGGATGCTTAATTAATTAATCAGTCTCTGTTGGTAATCTCCTGGATATGCAAGCTTAGGGCCTTATTAGGATATGTTGTTTAATTAGGTGTGTGTTTATGCTTGTAATCATCAATTGCAGTCTGCACTCTGCAGCACGTACCTGAGTGTGTGTAAGTTTGATGGCTAGCGTTTATGTTAAGAATGACTCT]
[+] EMBL AU091329             [       cgGTCAAGTCCTCAGCTCTCGTTTGGCATCCAAAGAAGAATTAGGTGTTATTACTAGGGTTTAGAGAGGTGTTGATTACTAGGGTTTAGAGAGGGAAAGGAAGGGAAGTGCTATGGCGGCGCCGTGGTGGGACTCGGAGTACAAGGACCGCTCCTCGCTGGAGTACCGCGTGTACGTCGGCAACCTGCCCTACTCCGTCGACGAGCAAACCCTCATGGACTACTTCGCCGACTACGGCGCCATCAGTGCCGAGATCGCTTGGGACAGTGAGATGGGGAGGCCACGC GGGTTCGGGTTCGTCAACTTCGAGGACAACGAGTC GGTGAACGCCGCCATCCACGGCATGAAC GGC                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL C74173               [                  TCAGCTCTCGTTTGGCATCCAAAGAAGAATTAGGTGTTATTACTAGGGTTTAGAGAGGTGTTGATTACTAGGGTTTAGAGAGGGAAAGGAAGGGAAGTGCTATGGCGGNGCCGTGGTGGGACTCGGAGTACAAGGACCGCTCCTCGCTGGAGTACCGCGTGTACGTNGGCAACCTGNCCTACTCCGTCGACGAGCAAACCCTCATGGACTACTTCGNCGACTACGG GCCATCAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL C74029               [                    tgtgcgatgTTGGCATCCAAAGAAGAATTAGGTGTTATTACTAGGGTTTAGAGAGGTGTTGATTACTAGGGTTTAGAGAGGGAAAGGAAGGGAAGGGCTATGGCGGCGCCGTGGTGGGACTCGGAGTACAAGGACCGCTCCTCGCTGGAGTACCGCGTGTACGTCGGCAACCTGCCCTACTCCGTCGACGAGCAAACCCTCATGNACTACTTCGCCGACTACGGNGCCATCAGTGCCGAGATCGCTTGGGACAGTGAGATGGGGANGCCACGCGGGGTTCGGGTTCGTCAACTTCGAGGACAACGANTCGGGTGAACGCCGCCATCCANGGCATGAACGGGCCA                                                                                                                                                                                                                                                                                                                                                                                                                                   ]




>consensus_7668#0
CGTGACCTCGTCAAGTCCTCAGCTCTCGTTTGGCATCCAAAGAAGAATTAGGTGTTATTA
CTAGGGTTTAGAGAGGTGTTGATTACTAGGGTTTAGAGAGGGAAAGGAAGGGAAGGGCTA
TGGCGGCGCCGTGGTGGGACTCGGAGTACAAGGACCGCTCCTCGCTGGAGTACCGCGTGT
ACGTCGGCAACCTGCCCTACTCCGTCGACGAGCAAACCCTCATGGACTACTTCGCCGACT
ACGGCGCCATCAGTGCCGAGATCGCTTGGGACAGTGAGATGGGGAGGCCACGCGGGTTCG
GGTTCGTCAACTTCGAGGACAACGAGTCGGTGAACGCCGCCATCCACGGCATGAACGGCC
AGGACATCGGCGGCCGCAAGGTCACCGTCGCGCGGGCCCAGATGCGCCCCCGCCGCTGGA
GGGCGTGACCGCGCCGCCGGCGGACGGCCGGCCGGCGGCGAGGAGGTCGACCTGGATGAG
CGGAGAAGACTCTACCTACCTACCTACCCTAAGCTATCTATGCTGCAGATCTACTAGCTA
GTTTTAGTCATTCGTCGTGTTGGTAGTTTGGTTAATTAGGGTTTAAGCGGTGGATGCTTA
ATTAATTAATCAGTCTCTGTTGGTAATCTCCTGGATATGCAAGCTTAGGGCCTTATTAGG
ATATGTTGTTTAATTAGGTGTGTGTTTATGCTTGTAATCATCAATTGCAGTCTGCACTCT
GCAGCACGTACCTGAGTGTGTGTAAGTTTGATGGCTAGCGTTTATGTTAAGAATGACTCT

consensusID : consensus_7668#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 109
fasta sequence

                              [GCCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACGTGGCAGCAGATAGAGTCNTTCTTAACATAAACNCTAGCCATC]

[+] EMBL AU225179             [GCCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACGTGGCAGCAGATAGAGTCNTTCTTAACATAAACNCTAGCCATC]




>consensus_7668#1
GCCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTGACGTGGCAGCAGATAGAGTCNTTCTTAACATAAACNCTAGCCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7668#0      CGTGACCTCGTCAAGTCCTCAGCTCTCGTTTGGCATCCAAAGAAGAATTAGGTGTTATTA 60
consensus_7668#1      ------------------------------------------------------------
                                                                                  

consensus_7668#0      CTAGGGTTTAGAGAGGTGTTGATTACTAGGGTTTAGAGAGGGAAAGGAAGGGAAGGGCTA 120
consensus_7668#1      ------------------------------------------------------------
                                                                                  

consensus_7668#0      TGGCGGCGCCGTGGTGGGACTCGGAGTACAAGGACCGCTCCTCGCTGGAGTACCGCGTGT 180
consensus_7668#1      ------------------------------------------------------------
                                                                                  

consensus_7668#0      ACGTCGGCAACCTGCCCTACTCCGTCGACGAGCAAACCCTCATGGACTACTTCGCCGACT 240
consensus_7668#1      ------------------------------------------------------------
                                                                                  

consensus_7668#0      ACGGCGCCATCAGTGCCGAGATCGCTTGGGACAGTGAGATGGGGAGGCCACGCGGGTTCG 300
consensus_7668#1      ------------------------------------------------------------
                                                                                  

consensus_7668#0      GGTTCGTCAACTTCGAGGACAACGAGTCGGTGAACGCCGCCATCCACGGCATGAACGGCC 360
consensus_7668#1      ------------------------------------------------------------
                                                                                  

consensus_7668#0      AGGACATCGGCGGCCGCAAGGTCACCGTCGCGCGGGCCCAGATGCGCCCCCGCCGCTGGA 420
consensus_7668#1      ------------------------------------------------------------
                                                                                  

consensus_7668#0      GGGCGTGACCGCGCCGCCGGCGGACGGCCGGCCGGCGGCGAGGAGGTCGACCTGGATGAG 480
consensus_7668#1      ------------------------------------------------------------
                                                                                  

consensus_7668#0      CGGAGAAGACTCTACCTACCTACCTACCCTAAGCTATCTATGCTGCAGATCTACTAGCTA 540
consensus_7668#1      ------------------------------------------------------------
                                                                                  

consensus_7668#0      GTTTTAGTCATTCGTCGTGTTGGTAGTTTGGTTAATTAGGGTTTAAGCGGTGGATGCTTA 600
consensus_7668#1      ------------------------------------------------------------
                                                                                  

consensus_7668#0      ATTAATTAATCAGTCTCTGTTGGTAATCTCCTGGATATGCAAGCTTAGGGCCTTATTAGG 660
consensus_7668#1      -------------------------------------------------GCCGCTTTT-- 9
                                                                       ***   **   

consensus_7668#0      ATATGTTGTTTAATTAGGTGTGTGTTTATGCTTGTAATCATCAATTGCAGTCTGCACTCT 720
consensus_7668#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACGTG 69
                       * * ** ***  **   * * * *** *  ** *  *  *   **    * *  **   

consensus_7668#0      GCAGCACGTACCTGAGTGTGTGTAAGTTTGATGGCTAGCGTTTATGTTAAGAATGACTCT 780
consensus_7668#1      GCAGCAGATA---GAGTCNTTCTTAACATAAACNCTAGCCATC----------------- 109
                      ******  **   ****   * * *   * *   *****  *