cluster # 7670

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Oryza sativa
cluster # 7670 cluster # 7670 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7670#0 length = 916 sequences # 3

consensus_7670#1 length = 664 sequences # 1
consensus_7670#2 length = 429 sequences # 1

consensusID : consensus_7670#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 916
fasta sequence

                              [GCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTATACAGCAACATTGCTTGACTTGCAAGCTTCACACTCTGAAAGCTCCAAACCAAAAATCGTTTTTCTTTCTTGGCTTAGTACATATCAGCTCAGCTCTGTACACGCAGGCACACACAACTCAAGCAACCACTCTCTGTTGAAAGCGAAAGGGAGACCAAACCAAACAGAAAAAAGAAAAAAAAACAAATCTGTATATGTACTCCTCTCTTTTTTTTCTTTTTTCTTTTTGAAGTAGTTATATATACTCAAAACTCAAAACCCAAAACTCAAAACTGTGGTTTGTATCATGCGCTATGTACATCATCAGAACACGAAAAAAACGCGTGTAGATGTAGATCAGTTGTCGTTTTCGTTTTAGGGCATCAGATGTGGAGAGCCCTTGTTCTCCTGAATCAGGGGTGGCAGATCCATATCTGCTATGTCGATGTGAACCATCAGCTTTGCAATGTCATCGATGGAGAACGGTATACTGAAATCGTCATCTAACAGGAAGGAATTGATGTCATCTTGTGTCGATGGACTGTTCGATCCCTGCTGGACCATCTTGGTTCTCATGCTCGAAACCACTTCTGGAGGAATACCCAGAGTTCCATACTTGTCGTCGCAATACATTGTGCTGATTCTGAATAGCTGCTGCATGCTAAGTGCTGGGCAGTACTCATCAATGATTTCTTTGAGAGACTTGCTGTGCTTCTCTTCAAGTATCAGAAGTGCTACGGCCTGCCTAATATGCTTCAGTTCGTCCCAGGAAGAACCTGCATACTCTTCAGTCAGCCAAAAGAACCAGTGCTCTAGCTCATCCAACCCAGCTTTAACATACTCTCCATTACTGAATGAACAGCATTCACGCCGTAGCAGAAGACTGTTAAGAGTTGAACATT]

[+] EMBL CF328007             [GCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTATACAGCAACATTGCTTGACTTGCAAGCTTCACACTCTGAAAGCTCCAAACCAAAAATCGTTTTTCTTTCTTGGCTTAGTACATATCAGCTCAGCTCTGTACACGCAGGCACACACAACTCAAGCAACCACTCTCTGTTGAAAGCGAAAGGGAGACCAAACCAAACAGAAAAAAGAAAAAAAAACAAATCTGTATATGTACTCCTCTCTTTTTTTTCTTTTTTCTTTTTGAAGTAGTTATATATACTCAAAACTCAAAACCCAAAACTCAAAACTGTGGTTTGTATCATGCGCTATGTACATCATCAGAACACGAAAAAAACGCGTGTAGATGTAGATCAGTTGTCGTTTTCGTTTTAGGGCATCAGATGTGGAGAGCCCTTGTTCTCCTGAATCAGGGGTGGCAGATCCATATCTGCTATGTCGATGTGAACCATCAGCTTTGCAATGTCATCGATGGAGAACGGTATACTGAAATCGTCATCTAACAGGAAGGAATTGATGTCATCTTGTGTCGATGGACTGTTCGATCCCTGCTGGACCATCTTGGTTCTCATGCTCGAAACCACTTCTGGAGGAATACCCAGAGTTCCATACTTGTCGTCGCAATACATTGTGCTGATTC                                                                                                                                                                                                                                                                  ]
[+] EMBL CB650681             [                                              TGGTTGACTTGCAAGCTCCTTAAAATGAAAGCTCCAAAACAAAAATCGTTTTTCTTTCTTGGCTTAGTACATATCAGCTCAGCTCTGTACCCTCAAGAACACACAACTCAAGCAACCACTCTCTGTTGAAAGCGAAAGGGAGACCAAACCAAACAGAAAAAAGAAAAAAAAACAAATCTGTATATGTACTCCTCTCTTTTTTTTCTTTTTTCTTTTTGAAGTAGTTATATATACTCAAAACTCAAAACCCAAAACTCAAAACTGTGGTTTGTATCATGCGCTATGTACATCATCAGAACACGAAAAAAACGCGTGTAGATGTAGATCAGTTGTCGTTTTCGTTTTAGGGCATCAGATGTGGAGAGCCCTTGTTCTCCTGAATCAGGGGTGGCAGATCCATATCTGCTATGTCGATGTGAACCATCAGCTTTGCAATGTCATCGATGGAGAACGGTATACTGAAATCGTCATCTAACAGGAAGGAATTGATGTCATCTTGTGTCGATGGACTGTTCGATCCCTGCTGGACCATCTTGGTTCTCATGCTCGAAACCACTTCTGGAGGAATACCCAGAGTTCCATACTTGTCGTCGCAATACATTGTGCTGATTCTGAATAGCTGCTGCATGCTAAGTGCTGGGCAGTACTCATCAATGATTTCTTTGAGAGACTTGCTGTGCTTCTCTTCAAGTATCAGAAGTGCTACGGCCTGCCTAA                                                                                                                                                         ]
[-] EMBL CF328006             [                                                                                                                                                                                                                                                                                                                    TGTGGTTTGTATCATGCGCTATGTACATCATCAGAACACGAAAAAAACGCGTGTAGATGTAGATCAGTTGTCGTTTTCGTTTTAGGGCATCAGATGTGGAGAGCCCTTGTTCTCCTGAATCAGGGGTGGCAGATCCATATCTGCTATGTCGATGTGAACCATCAGCTTTGCAATGTCATCGATGGAGAACGGTATACTGAAATCGTCATCTAACAGGAAGGAATTGATGTCATCTTGTGTCGATGGACTGTTCGATCCCTGCTGGACCATCTTGGTTCTCATGCTCGAAACCACTTCTGGAGGAATACCCAGAGTTCCATACTTGTCGTCGCAATACATTGTGCTGATTCTGTATAGCTGCTGCATGCTAAGTGCTGGGCAGTACTCATCAGTGATTTCTTTGAGAGACTTGCTGTGCTTCTCTTCAAGTATCAGAAGTGCTACGGCCTGCCTAATATGCTTCAGTTCGTCCCAGGAAGAACCTGCATACTCTTCAGTCAGCCAAAAGAACCAGTGCTCTAGCTCATCCAACCCAGCTTTAACATACTCTCCATTACTGAATGAACAGCATTCACGCCGTAGCAGAAGACTGTTAAGAGTTGAACATT]




>consensus_7670#0
GCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTATACAGCAACATTGCTTGACTTGCAA
GCTTCACACTCTGAAAGCTCCAAACCAAAAATCGTTTTTCTTTCTTGGCTTAGTACATAT
CAGCTCAGCTCTGTACACGCAGGCACACACAACTCAAGCAACCACTCTCTGTTGAAAGCG
AAAGGGAGACCAAACCAAACAGAAAAAAGAAAAAAAAACAAATCTGTATATGTACTCCTC
TCTTTTTTTTCTTTTTTCTTTTTGAAGTAGTTATATATACTCAAAACTCAAAACCCAAAA
CTCAAAACTGTGGTTTGTATCATGCGCTATGTACATCATCAGAACACGAAAAAAACGCGT
GTAGATGTAGATCAGTTGTCGTTTTCGTTTTAGGGCATCAGATGTGGAGAGCCCTTGTTC
TCCTGAATCAGGGGTGGCAGATCCATATCTGCTATGTCGATGTGAACCATCAGCTTTGCA
ATGTCATCGATGGAGAACGGTATACTGAAATCGTCATCTAACAGGAAGGAATTGATGTCA
TCTTGTGTCGATGGACTGTTCGATCCCTGCTGGACCATCTTGGTTCTCATGCTCGAAACC
ACTTCTGGAGGAATACCCAGAGTTCCATACTTGTCGTCGCAATACATTGTGCTGATTCTG
AATAGCTGCTGCATGCTAAGTGCTGGGCAGTACTCATCAATGATTTCTTTGAGAGACTTG
CTGTGCTTCTCTTCAAGTATCAGAAGTGCTACGGCCTGCCTAATATGCTTCAGTTCGTCC
CAGGAAGAACCTGCATACTCTTCAGTCAGCCAAAAGAACCAGTGCTCTAGCTCATCCAAC
CCAGCTTTAACATACTCTCCATTACTGAATGAACAGCATTCACGCCGTAGCAGAAGACTG
TTAAGAGTTGAACATT

consensusID : consensus_7670#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence

                              [TTTTTTTTTTTTATACAGCAACATTGCTTGACTTGCAAGCCTCACACTCTGAAAGCTCCAAACCAAAAATCGTTTTTCTTTCTTGGCTTAGTACATATCAGCTCAGCTCTGTACACGCAGGCACACACAACTCAAGCAACCACTCTCTGTTGAAAGCGAAAGGGGGACCAAACCAAACAGAAAAAAGAAAAAAAAACAAATCTGTATATGTACTCCTCTCTTTTTTTTCTTTTTTCTTTTTGAAGTAGTTATATATACTCAAAACTCAAAACCCAAAACTCAAAACTGGGGTTTGTATCATGCGCTATGTACATCATCAGAACACGAAAAAAACGCGTGTAGATGTAGATCAGTTGTCGTTTTCGTTTTAGGGCATCAAATGTGGAGAGCCCTTGTTCTCCTGAATCAGGGGTGGCAGATCCATATCTGCTATGTCGATGGGAACCATCAGCTTTGCAATGGCATCGATGGAGAACGGTATACTGAAATCGTCATCTAACAGGAAGGAATTGATGTCATCTTGGGGCGATGCACTGTCCGATCCCTGCGTGGCCATCTTGGTTCTCATGCCCGAAACCACTCGGGGAGGAAAACCCAGAGGTTCCTACTGTGCCGCCGGAATGCATACGCCGAATCCGGCGCGGTCGCCTGGCTCCCAGCCCCC]

[+] EMBL CA763021             [TTTTTTTTTTTTATACAGCAACATTGCTTGACTTGCAAGCCTCACACTCTGAAAGCTCCAAACCAAAAATCGTTTTTCTTTCTTGGCTTAGTACATATCAGCTCAGCTCTGTACACGCAGGCACACACAACTCAAGCAACCACTCTCTGTTGAAAGCGAAAGGGGGACCAAACCAAACAGAAAAAAGAAAAAAAAACAAATCTGTATATGTACTCCTCTCTTTTTTTTCTTTTTTCTTTTTGAAGTAGTTATATATACTCAAAACTCAAAACCCAAAACTCAAAACTGGGGTTTGTATCATGCGCTATGTACATCATCAGAACACGAAAAAAACGCGTGTAGATGTAGATCAGTTGTCGTTTTCGTTTTAGGGCATCAAATGTGGAGAGCCCTTGTTCTCCTGAATCAGGGGTGGCAGATCCATATCTGCTATGTCGATGGGAACCATCAGCTTTGCAATGGCATCGATGGAGAACGGTATACTGAAATCGTCATCTAACAGGAAGGAATTGATGTCATCTTGGGGCGATGCACTGTCCGATCCCTGCGTGGCCATCTTGGTTCTCATGCCCGAAACCACTCGGGGAGGAAAACCCAGAGGTTCCTACTGTGCCGCCGGAATGCATACGCCGAATCCGGCGCGGTCGCCTGGCTCCCAGCCCCC]




>consensus_7670#1
TTTTTTTTTTTTATACAGCAACATTGCTTGACTTGCAAGCCTCACACTCTGAAAGCTCCA
AACCAAAAATCGTTTTTCTTTCTTGGCTTAGTACATATCAGCTCAGCTCTGTACACGCAG
GCACACACAACTCAAGCAACCACTCTCTGTTGAAAGCGAAAGGGGGACCAAACCAAACAG
AAAAAAGAAAAAAAAACAAATCTGTATATGTACTCCTCTCTTTTTTTTCTTTTTTCTTTT
TGAAGTAGTTATATATACTCAAAACTCAAAACCCAAAACTCAAAACTGGGGTTTGTATCA
TGCGCTATGTACATCATCAGAACACGAAAAAAACGCGTGTAGATGTAGATCAGTTGTCGT
TTTCGTTTTAGGGCATCAAATGTGGAGAGCCCTTGTTCTCCTGAATCAGGGGTGGCAGAT
CCATATCTGCTATGTCGATGGGAACCATCAGCTTTGCAATGGCATCGATGGAGAACGGTA
TACTGAAATCGTCATCTAACAGGAAGGAATTGATGTCATCTTGGGGCGATGCACTGTCCG
ATCCCTGCGTGGCCATCTTGGTTCTCATGCCCGAAACCACTCGGGGAGGAAAACCCAGAG
GTTCCTACTGTGCCGCCGGAATGCATACGCCGAATCCGGCGCGGTCGCCTGGCTCCCAGC
CCCC

consensusID : consensus_7670#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 429
fasta sequence

                              [ATCCCTGCTGGACCATCTTGGTTCTCATGCTCGAAACCACTTCTGGAGGAATACCCAGAGTTCCATACTTGTCGTCGCAATACATTGTGCTGATTCTGTATAGCTGCTGCATGCTAAGTGCCTGTTTGCCAGGATAGAATGCATCATCCAATTTTGTTATTGACATAATGAGATTAGCAAAGCAGGTAGTGTAGATAAAGTCAAAATCTTACTGGGCAGTACTCATCAGTGATTTCTTTGAGAGACTTGCTGTGCTTCTCTTCAAGTATCAGAAGTGCTACGGCCTGCCTAATATGCTTCAGTTCGTCCCAGGAAGAACCTGCATACTCTTCAGTCAGCCAAAAGCACCAGTGCTCTAGCTCATCCAACCCAGCTTTAACATACTCTCCATTACTGAATGAACAGCATTCACGCCGTAGCAGAAGACTA]

[-] EMBL AU181753             [ATCCCTGCTGGACCATCTTGGTTCTCATGCTCGAAACCACTTCTGGAGGAATACCCAGAGTTCCATACTTGTCGTCGCAATACATTGTGCTGATTCTGTATAGCTGCTGCATGCTAAGTGCCTGTTTGCCAGGATAGAATGCATCATCCAATTTTGTTATTGACATAATGAGATTAGCAAAGCAGGTAGTGTAGATAAAGTCAAAATCTTACTGGGCAGTACTCATCAGTGATTTCTTTGAGAGACTTGCTGTGCTTCTCTTCAAGTATCAGAAGTGCTACGGCCTGCCTAATATGCTTCAGTTCGTCCCAGGAAGAACCTGCATACTCTTCAGTCAGCCAAAAGCACCAGTGCTCTAGCTCATCCAACCCAGCTTTAACATACTCTCCATTACTGAATGAACAGCATTCACGCCGTAGCAGAAGACTA]




>consensus_7670#2
ATCCCTGCTGGACCATCTTGGTTCTCATGCTCGAAACCACTTCTGGAGGAATACCCAGAG
TTCCATACTTGTCGTCGCAATACATTGTGCTGATTCTGTATAGCTGCTGCATGCTAAGTG
CCTGTTTGCCAGGATAGAATGCATCATCCAATTTTGTTATTGACATAATGAGATTAGCAA
AGCAGGTAGTGTAGATAAAGTCAAAATCTTACTGGGCAGTACTCATCAGTGATTTCTTTG
AGAGACTTGCTGTGCTTCTCTTCAAGTATCAGAAGTGCTACGGCCTGCCTAATATGCTTC
AGTTCGTCCCAGGAAGAACCTGCATACTCTTCAGTCAGCCAAAAGCACCAGTGCTCTAGC
TCATCCAACCCAGCTTTAACATACTCTCCATTACTGAATGAACAGCATTCACGCCGTAGC
AGAAGACTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7670#0      GCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTATACAGCAACATTGCTTGACTTGCAA 60
consensus_7670#1      ----------------------TTTTTTTTTTTTATACAGCAACATTGCTTGACTTGCAA 38
consensus_7670#2      --------ATCCCTGCTGGACCATCTTGGTTCTCATGCT-CGAAACCACTTCTGGAGGAA 51
                                             * **  ** * ** *  * * *   ***     * **

consensus_7670#0      GCTTCACACTCTGAAAGCTCCAAACCAAAAATCGTTTTTCTTTCTTGGCTTAGTACATAT 120
consensus_7670#1      GCCTCACACTCTGAAAGCTCCAAACCAAAAATCGTTTTTCTTTCTTGGCTTAGTACATAT 98
consensus_7670#2      TACCCAGAGTTCCATA-CTTGTCGTCGCAATACATTGTGCTGATTCTGTATAGCTGCTGC 110
                          ** * *   * * **      *  **  * ** * **   *  *  ***    *  

consensus_7670#0      CAGCTCAGC-TCTGTACACGCAGGCACACACAACTCAAGCAACCACTCTCTGTTGAAAGC 179
consensus_7670#1      CAGCTCAGC-TCTGTACACGCAGGCACACACAACTCAAGCAACCACTCTCTGTTGAAAGC 157
consensus_7670#2      ATGCTAAGTGCCTGTTTGC-CAGG---ATAGAATGCAT-CATCCAAT-TTTGTTATTGAC 164
                        *** **   ****   * ****   * * **  **  ** *** * * ****     *

consensus_7670#0      GAAAGGGAGACCAAACCAAACAGAAAAAAGAAAAAAAAACAAATCTGTATATGTACTCCT 239
consensus_7670#1      GAAAGGGGGACCAAACCAAACAGAAAAAAGAAAAAAAAACAAATCTGTATATGTACTCCT 217
consensus_7670#2      ATAATGAGATT--AGCAAAGCAGGTAGTGTAGATAAAGTCAAAATCTTAC-TGGGCAGTA 221
                        ** *       * * ** ***  *    * * ***  ****    **  **  *    

consensus_7670#0      CTCTTTTTTTTCTTTTTTCTTTTTGAAGTAGTTATATATACTCAAAACTCAAAACCCAAA 299
consensus_7670#1      CTCTTTTTTTTCTTTTTTCTTTTTGAAGTAGTTATATATACTCAAAACTCAAAACCCAAA 277
consensus_7670#2      CTCAT------CAGTGATTTCTTTGAGAGACTTGC-TGTGCTT----CTC----TTCAAG 266
                      *** *      *  *  * * *****   * **   * * **     ***      *** 

consensus_7670#0      ACTCAAAACTGTGGTTTGTATCATGCGCTATGTACATCATCAGAACACGAAAAAAACGCG 359
consensus_7670#1      ACTCAAAACTGGGGTTTGTATCATGCGCTATGTACATCATCAGAACACGAAAAAAACGCG 337
consensus_7670#2      TATCAGAAGTG----CTACGGCCTGCCTAATATGCTTCAGTTCGTCCCAGGAAGAACCTG 322
                        *** ** **     *    * ***   ** * * ***      * *   ** ***  *

consensus_7670#0      TGTAGATGTAGATCAGTTGT---CGTTTTCGTTTTAGGGCATCAGATGTGGAGAGCCCTT 416
consensus_7670#1      TGTAGATGTAGATCAGTTGT---CGTTTTCGTTTTAGGGCATCAAATGTGGAGAGCCCTT 394
consensus_7670#2      CATACTCTTCAGTCAGCCAAAAGCACCAGTGCTCTAGCTCATCCAACCCAGCTTTAACAT 382
                        **    *   ****       *      * * ***  ****  *    *      * *

consensus_7670#0      GTTCTCCTGAATCAGGGGTGGCAGATCCATATCTGCTATGTCGATGTGAACCATCAGCTT 476
consensus_7670#1      GTTCTCCTGAATCAGGGGTGGCAGATCCATATCTGCTATGTCGATGGGAACCATCAGCTT 454
consensus_7670#2      ACTCTCC---ATTAC---TGAATGAACAGCATTCACGCCGTAGCAGAAGACTA------- 429
                        *****   ** *    **   ** *   **   *   ** *  *   ** *       

consensus_7670#0      TGCAATGTCATCGATGGAGAACGGTATACTGAAATCGTCATCTAACAGGAAGGAATTGAT 536
consensus_7670#1      TGCAATGGCATCGATGGAGAACGGTATACTGAAATCGTCATCTAACAGGAAGGAATTGAT 514
consensus_7670#2      ------------------------------------------------------------
                                                                                  

consensus_7670#0      GTCATCTTGTGTCGATGGACTGTTCGATCCCTGCTGGACCATCTTGGTTCTCATGCTCGA 596
consensus_7670#1      GTCATCTTGGGGCGATGCACTGTCCGATCCCTGCGTGGCCATCTTGGTTCTCATGCCCGA 574
consensus_7670#2      ------------------------------------------------------------
                                                                                  

consensus_7670#0      AACCACTTCTGGAGGAATACCCAGAGTTCCATACT-TGTCGTCGCAATACATTGTGCTGA 655
consensus_7670#1      AACCACTCGGGGAGGAAAACCCAGAGGTTCCTACTGTGCCGCCGGAATGCATACGCCGAA 634
consensus_7670#2      ------------------------------------------------------------
                                                                                  

consensus_7670#0      TTCTGAATAGCTGCTGCATGCTAAGTGCTGGGCAGTACTCATCAATGATTTCTTTGAGAG 715
consensus_7670#1      TCCGGCGCGGTCGCCTGGCTCCCAGCCCCC------------------------------ 664
consensus_7670#2      ------------------------------------------------------------
                                                                                  

consensus_7670#0      ACTTGCTGTGCTTCTCTTCAAGTATCAGAAGTGCTACGGCCTGCCTAATATGCTTCAGTT 775
consensus_7670#1      ------------------------------------------------------------
consensus_7670#2      ------------------------------------------------------------
                                                                                  

consensus_7670#0      CGTCCCAGGAAGAACCTGCATACTCTTCAGTCAGCCAAAAGAACCAGTGCTCTAGCTCAT 835
consensus_7670#1      ------------------------------------------------------------
consensus_7670#2      ------------------------------------------------------------
                                                                                  

consensus_7670#0      CCAACCCAGCTTTAACATACTCTCCATTACTGAATGAACAGCATTCACGCCGTAGCAGAA 895
consensus_7670#1      ------------------------------------------------------------
consensus_7670#2      ------------------------------------------------------------
                                                                                  

consensus_7670#0      GACTGTTAAGAGTTGAACATT 916
consensus_7670#1      ---------------------
consensus_7670#2      ---------------------