These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7676#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1739 fasta sequence [CTCCATCCCTGCTCACCTGATTCCCCGACACCATCGCACCCAGCCGCCATGGCCTCCTCCTCCAAGCTCCTAGCCCTCACCCTCACCTCCTCCTTCCTCCGCTCCTCCCTCCTGCCCGCCCCGTCCCGCCGCCTCCCCACCGGCCCACTCCTCTCCCTCCGCTTCTGCTCCGCCGCGGGGGATGTCGCCGACGCTCCTGCCGCCGCCGCAGCACCAGATCATCCGTGGCCCGAGTGGGGCGATTTCCTCGAGAAGCTTCGGGCCAAGGGGTACTTCGAGCAGCCCACCCTCGCGTCTCGCGCTGATGCTGCGGAGGGGGAGGTGGCTGCGACCGCCGCGGCGGCGGCGGCGGCGGCGGGGGAGGACCCTGGGGCCTCGGCCGACAATTACCCATCCAAGGACCTGAACAGGTTGAAGAACGCATGCCTCAAGTTCGGCCGAGAGCGCTTCGATCTCCTCAGTGTCCTTCCCAAGCAGGATATCCGTGCTATTGTTGAGTGTGGCTGTCCTAACATCTTCCGGAAGCCTGTGAATTCTGCAAAAAGACTCAGAGAGTTTCTTCAGATTGATGAAGGAGATGCCTGTAGTGCTTGCAAATTACGTGGATCTTGTGATAAAGCCTATGTCATTCCGAACGCTGAAGACGAAGCTCGTACTGTCGATGTTATGCGCATACTGCTAAATTATGCAATAGATCCAACCAGCCTTTCAGGAGAAAACTCTGTTAATGGTGGTGTTCAAGAATCTGCGAGAAAGCTTCTTTCAGAGCTTACTATGCTTAGCGACACAACAATTGATCCATCAATTCCTAAACCTGTATTCCAAACTTCTAGCAAGACCAAAACTTTTGACAAGGGCATTGCAAAGCCTAAGTTCTCAGCTGGAAAGGGTAGGGAAACAACTGAAACAGAAATGAAGAAGGGTGATTGGCTTTGCCCAAATTGCAACTTCTTAAATTTTGCTCGAAATCGGCACTGCCTTGAATGCAAAGCAGATGGACCAAAGAAGATAGAAACAGCTACCACTGAAATGAAAACGGGAGACT-GGATCTGTCCACAGTGCCACTTCATGAACTTTGCACGG-AATAAGATGTGTTTTAAATGTGAAGAATCTCGACCAAAGAGGCAGCTCATCCCTGGAGAATGGGAGTGCCCCTCATGCAGCTTTGTGAACTTTCGACGCAACAAGGTCTGCTTGAAGTGCAAGCATGAAGGCCCCGAAAATGATACCCATGACAGCCAGCACGGACA-CAATAGGTGGAGGAACACGAGAGGGGCTGACAGAAGTAGAAGTTTTGATGACTCTTTCGATCGGGAGGACGATGGCTCTGATCCAGACGAAGGCGAGCGCAGACGTGCCAAAGTGCGCACTAGGGCAGCATCAA-CCCTGGGGAGATCCACTGGCAAGAGCAAAATTTTTGACTCGATTCATGAGGATGGTAACGGTAGGGAGGATGACAGCGAGGATGTCCTGCCGTACGAAGGGCAGCGCAGGCATATTGTGAGCAAAAGGGCGACACCAGCACAGAGGAGATTCACTGCTGGTAGAAGC----GAGGATATTTGATAGTCTGATAGATATATATAACTTCGATATTTTTCCATGTAGCGTATAGTTTCATTATGTACTGTGTACTATTTACTCGAGCACTTTATGGTTAGACTAGCTTGGTTGTAATTCATACTGCTTAGTTCCAAATAAGTTCATTTTTTATCAATCCCATAAATACCACTACAAAAAAA] [+] EMBL AK073541 [CTCCATCCCTGCTCACCTGATTCCCCGACACCATCGCACCCAGCCGCCATGGCCTCCTCCTCCAAGCTCCTAGCCCTCACCCTCACCTCCTCCTTCCTCCGCTCCTCCCTCCTGCCCGCCCCGTCCCGCCGCCTCCCCACCGGCCCACTCCTCTCCCTCCGCTTCTGCTCCGCCGCGGGGGATGTCGCCGACGCTCCTGCCGCCGCCGCAGCACCAGATCATCCGTGGCCCGAGTGGGGCGATTTCCTCGAGAAGCTTCGGGCCAAGGGGTACTTCGAGCAGCCCACCCTCGCGTCTCGCGCTGATGCTGCGGAGGGGGAGGTGGCTGCGACCGCCGCGGCGGCGGCGGCGGCGGCGGGGGAGGACCCTGGGGCCTCGGCCGACAATTACCCATCCAAGGACCTGAACAGGTTGAAGAACGCATGCCTCAAGTTCGGCCGAGAGCGCTTCGATCTCCTCAGTGTCCTTCCCAAGCAGGATATCCGTGCTATTGTTGAGTGTGGCTGTCCTAACATCTTCCGGAAGCCTGTGAATTCTGCAAAAAGACTCAGAGAGTTTCTTCAGATTGATGAAGGAGATGCCTGTAGTGCTTGCAAATTACGTGGATCTTGTGATAAAGCCTATGTCATTCCGAACGCTGAAGACGAAGCTCGTACTGTCGATGTTATGCGCATACTGCTAAATTATGCAATAGATCCAACCAGCCTTTCAGGAGAAAACTCTGTTAATGGTGGTGTTCAAGAATCTGCGAGAAAGCTTCTTTCAGAGCTTACTATGCTTAGCGACACAACAATTGATCCATCAATTCCTAAACCTGTATTCCAAACTTCTAGCAAGACCAAAACTTTTGACAAGGGCATTGCAAAGCCTAAGTTCTCAGCTGGAAAGGGTAGGGAAACAACTGAAACAGAAATGAAGAAGGGTGATTGGCTTTGCCCAAATTGCAACTTCTTAAATTTTGCTCGAAATCGGCACTGCCTTGAATGCAAAGCAGATGGACCAAAGAAGATAGAAACAGCTACCACTGAAATGAAAACGGGAGACT GGATCTGTCCACAGTGCCACTTCATGAACTTTGCACGG AATAAGATGTGTTTTAAATGTGAAGAATCTCGACCAAAGAGGCAGCTCATCCCTGGAGAATGGGAGTGCCCCTCATGCAGCTTTGTGAACTTTCGACGCAACAAGGTCTGCTTGAAGTGCAAGCATGAAGGCCCCGAAAATGATACCCATGACAGCCAGCACGGACA CAATAGGTGGAGGAACACGAGAGGGGCTGACAGAAGTAGAAGTTTTGATGACTCTTTCGATCGGGAGGACGATGGCTCTGATCCAGACGAAGGCGAGCGCAGACGTGCCAAAGTGCGCACTAGGGCAGCATCAA CCCTGGGGAGATCCACTGGCAAGAGCAAAATTTTTGACTCGATTCATGAGGATGGTAACGGTAGGGAGGATGACAGCGAGGATGTCCTGCCGTACGAAGGGCAGCGCAGGCATATTGTGAGCAAAAGGGCGACACCAGCACAGAGGAGATTCACTGCTGGTAGAAGC GAGGATATTTGATAGTCTGATAGATATATATAACTTCGATATTTTTCCATGTAGCGTATAGTTTCATTATGTACTGTGTACTATTTACTCGAGCACTTTATGGTTAGACTAGCTTGGTTGTAATTCATACTGCTTAGTTCCAAATAAG ] [+] EMBL CF319602 [ TCATTCCGAACGCTGAAGACGAAGCTCGTACTGTCGATGTTATGCGCATACTGCTAAATTATGCAATAGATCCAACCAGCCTTTCAGGAGAAAACTCTGTTAATGGTGGTGTTCAAGAATCTGCGAGAAAGCTTCTTTCAGAGCTTACTATGCTTAGCGACACAACAATTGATCCATCAATTCCTAAACCTGTATTCCAAACTTCTAGCAAGACCAAAACTTTTGACAAGGGCATTGCAAAGCCTAAGTTCTCAGCTGGAAAGGGTAGGGAAACAACTGAAACAGAAATGAAGAAGGGTGATTGGCTTTGCCCAAATTGCAACTTCTTAAATTTTGCTCGAAATCGGCACTGCCTTGAATGCAAAGCAGATGGACCAAAGAAGATAGAAACAGCTACCACTGAAATGAAAACGGGAGACTNGGATCTGTCCACAGTGCCACTTCATGAACTTTGCACGGNAATAAGATGTGTTTTAAATGTGAAGAATCTCGACCAAAGAGGCAG ] [-] EMBL CF319603 [ GCCCCTCATGCAGCTTTGTGAACTTTCGACGCAACAAGGTCTGCTTGAAGTGCAAGCATGAAGGCCCCGAAAATGATACCCATGACAGCCAGCACGGACANCAATAGGTGGAGGAACACGAGAGGGGCTGACAGAAGTAGAAGTTTTGATGACTCTTTCGATCGGGAGGACGATGGCTCTGATCCAGACGAAGGCGAGCGCAGACGTGCCAAAGTGCGCACTAGGGCAGCATCAA CCCTGGGGAGATCCACTGGCAAGAGCAAAATTTTTGACTCGATTCATGAGGATGGTAACGGTAGGGAGGATGACAGCGAGGATGTCCTGCCGTACGAAGGGCAGCGCAGGCATATTGTGAGCAAAAGGGCGACACCAGCACAGAGGAGATTCACTGCTGGTAGAAGC GAGGATATTTGATAGTCTGATAGATATATATAACTTCGATATTTTTCCATGTAGCGTATAGTTTCATTATGTACTGTGTACTATTTACTCGAGCACTTTATGGTTAGACTAGCTTGGTTGTAATTCATACTGCTTAGTTCCAAATAAGTTCATTTTTTATCAATCCCATAAATACCACTACAAAAAAA] [-] EMBL CB966672 [ ATCGGGAGGACGATGGCTCTGATCCAGACGAAGGCGAGCGCAGACGTGCCAAAGTGCGCACTAGGGCAGCATCAACCCCTGGGGAGATCCACTGGCAAGAGCAAAATTTTTGATTCGATTCATGAGGATGGTAACGGTAGGGAGGATGACAGCGAGGATGTCCTGCCGTACGAAGGGCAGCGCAGGCATATTGTGACCAAAAGGGCGACACCAGCACAGAGGAGATTCACTGCTGGTAGAAGCAAGTGAGGATATTTGATAGTCTGATAGATATATATAACTTCGATATTTTTCCATGTAGCGTATAGTTTCATTATGTACTGTGTACTATTTACTCGAGCACTTTATGGTTAGACTAGCTTGGTTGTAATTCATACTGCTTAGTTCC AATAAGTTCATTTTTT ] [-] EMBL CB966826 [ ATCGGGAGGACGATGGCTCTGATCCAGACGAAGGCGAGCGCAGACGTGCCAAAGTGCGCACTAGGGCAGCATCAA CCCTGGGGAGATCCACTGGCAAGAGCAAAATTTTTGATTCGATTCATGAGGATGGTAACGGTAGGGAGGATGACAGCGAGGATGTCCTGCCGTACGAAGGGCAGCGCAGGCATATTGTGAGCAAAAGGGCGACACCAGCACAGAGGAGATTCACTGCTGGTAGAAGCAAGTGAGGATATTTGATAGTCTGATAGATATATATAACTTCGATATTTTTCCATGTAGCGTATAGTTTCATTATGTACTGTGTACTATTTACTCGAGCACTTTATGGTTAGACTAGCTTGGTTGTAATTCATACTGCTTAGTTCCAAATAAGTTCATTTTT ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||