|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7681#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1285 fasta sequence
[CTGCCTAGCAACAAAGGTCTTAATTAGGAGCTCTCTCCATTAGGATCCTCGAGCTTCAGGAAGCTATCTCCAACAAAACATACACATTCAGATCAACTTCAGTGATGGCTGCAGAATCAGAGACGCCGCGAATAACAGAGCTTCATGTGAGGATGGACTGCAATGGCTGCGAGCACAAGATCAGGAAGACTCTGCGTGCCATTGATGGTGTGAGCGAGGTGTACGTAGATGCAGCGAGCCAGAAGGTGACGGTTGTCGGGATCGCCGACCCGGAGAGGATCGTCAAGGCGATCAGGAAGACCAAGAGGGTCCCCACCATCTTCTCCCACACCGACCCGGCGGCGCCGCC-GCCGCCGCCGGCCGAAGGCGAG-G-CCGCGCCACCGCCAGCCGACGCGCCACCGCCGGAGGAAGCACCGGCCGCAGAGCCGGCACCATCAGAAGCGGCGCCGCCGCCGCCGGCGGAAGCCGACCAGGCGGCGGCTCCCCCGGCCACCGACGCTACCGTCATACACATGGTGCACGACTACCCGTACACCCACGACCACCACCACGGCCACGGCCACCACCTGTTCGGCCGGGACCACTGGCCGGCGAGCCACCATCCCGCCGGCGGCATGGTCAACTACGGCGGCGGCGCGCCGTACTACGCCGCGCACAGCTACAGCCACAGGGCGAGCCCGTACGTCTCGGAGTACGGCTACGTCGGCTCTCCGGCTCACCATGAGGGCAGATTCTACAGCAGCCATGATTACTACTACCCTGCAGCTGCTGGTGGCAGAGGGAAGGGAGATGGAAGCCAGATCACCTCCGTGTTCAGCGATGAGAACCCTAATGCATGCACCATATCCTAATCAACATGCTTTTGCCTGTCAAGAAGTAATTAAGGTGGGGTATTATATAGTATTGATGATTAGTGTTAATTAAGATTACTGTAACATGAGATTTATGTAAAATAGTATTAATTAAGAGGGGTGTAAGTAAGATAAGGAAAAAAGGGGAGCAATAAGATGCTTAACTTGTAGTAGTGGGAGATGATTTTCCTTGGCAATCACCACTATTTTTTTTTTACCGCCGTCCACTACACCTCAAGAGAATCCAACAAAGCTGTGGTCCTGTGTATATGATGTGTACTTGAAAAAAAAGTGGCAGAGACGTCACAGTATTTCCAGGCCAAATCTAAAAACTTTGTCCTGTCTAGCATGTTGGGAATAGAGACATTTTTGTATTCTCTTGAAATATATGTACATCTGATTTGCATCGCATAAATCTAGAGATCTTATCTTCT]
[+] EMBL AK110758 [CTGCCTAGCAACAAAGGTCTTAATTAGGAGCTCTCTCCATTAGGATCCTCGAGCTTCAGGAAGCTATCTCCAACAAAACATACACATTCAGATCAACTTCAGTGATGGCTGCAGAATCAGAGACGCCGCGAATAACAGAGCTTCATGTGAGGATGGACTGCAATGGCTGCGAGCACAAGATCAGGAAGACTCTGCGTGCCATTGATGGTGTGAGCGAGGTGTACGTAGATGCAGCGAGCCAGAAGGTGACGGTTGTCGGGATCGCCGACCCGGAGAGGATCGTCAAGGCGATCAGGAAGACCAAGAGGGTCCCCACCATCTTCTCCCACACCGACCCGGCGGCGCCGCC GCCGCCGCCGGCCGAAGGCGAG G CCGCGCCACCGCCAGCCGACGCGCCACCGCCGGAGGAAGCACCGGCCGCAGAGCCGGCACCATCAGAAGCGGCGCCGCCGCCGCCGGCGGAAGCCGACCAGGCGGCGGCTCCCCCGGCCACCGACGCTACCGTCATACACATGGTGCACGACTACCCGTACACCCACGACCACCACCACGGCCACGGCCACCACCTGTTCGGCCGGGACCACTGGCCGGCGAGCCACCATCCCGCCGGCGGCATGGTCAACTACGGCGGCGGCGCGCCGTACTACGCCGCGCACAGCTACAGCCACAGGGCGAGCCCGTACGTCTCGGAGTACGGCTACGTCGGCTCTCCGGCTCACCATGAGGGCAGATTCTACAGCAGCCATGATTACTACTACCCTGCAGCTGCTGGTGGCAGAGGGAAGGGAGATGGAAGCCAGATCACCTCCGTGTTCAGCGATGAGAACCCTAATGCATGCACCATATCCTAATCAACATGCTTTTGCCTGTCAAGAAGTAATTAAGGTGGGGTATTATATAGTATTGATGATTAGTGTTAATTAAGATTACTGTAACATGAGATTTATGTAAAATAGTATTAATTAAGAGGGGTGTAAGTAAGATAAGGAAAAAAGGGGAGCAATAAGATGCTTAACTTGTAGTAGTGGGAGATGATTTTCCTTGGCAATCACCACTATTTTTTTTTTACCGCCGTCCACTACACCTCAAGAGAATCCAACAAAGCTGTGGTCCTGTGTATATGATGTGTACTTGAAAAAAAAGTGGCAGAGACGTCACAGTATTTCCA ]
[+] EMBL C71994 [ TCCATTAGGNTCCTCGAGCTTCAGGAAGCTATCTCCAACAAAACATACACATTCAGATCAACTTCAGTGATGGCTGCAGAATCAGAGACGCCGCGAATAACAGAGCTTCATGTGAGGATGGACTGCAATGGCTGCGAGCACAAGATCAGGAAGACTCTGCGTGCCATTGATGGTGTGAGCNAGGTGTACGTAGATGCAGCGAGCCAGAAGGTGACGGTTGTCGGGATCGCCGACCCGGAGAGGATCGTCAAGGCGATCAGGAAGACCAAGAGGGTCCCCACCATCTTCTCCCACACCGACCCGGCGGCG CGCCNGTCG CNCGGCCCGAAGG GAGNGCCCGCGCCACCGCC ]
[+] EMBL CA764718 [ ATTCTACAGCAGCCATGATTACTACTACCCTGCAGCTGCTGGTGGCAGAGGGAAGGGAGATGGAAGCCAGATCACCTCCATGTTCAGCGATGAGAACCCTAATGCATGCACCATATCCTAATCAACATGCTTTTGCCTGTCAAGAAGTAATTAAGGTGGGGTATTATATAGTATTGATGATTAGTGTTAATTAAGATTACTGTAACATGAGATTTATGTAAAATAGTATTAATTAAGAGGGGTGTAAGTAAGATAAGGAAAAAAGGGGAGCAATAAGATGCTTAACTTGTAGTAGTGGGAGATGATTTTCCTTGGCAATCACCACTATTTTTTTTTTACCGCCGTCCACTACACCTCAAGAGAATCCAACAAAGCTGTGGTCCTGTGTATATGATGTGTACTTGAAAAAAAAGTGGCAGAGACGTCACAGTATTTCCAGGCCAAATCTAAAAACTTTGTCCTGTCTAGCATGTTGGGAATAGAGACATTTTTGTATTCTCTTGAAATATATGTACATCTGATTTGCATCGCATAAATCTAGAGATCTTATCTTCT]
consensusID : consensus_7681#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 692 fasta sequence
[ACGTCCATGCAGCGAGCCAGAAGGTGACGGTTGTCGGGATCGCCGACCCGGAGAGGATCGTCAAGGCGATCAGGAAGACCAAGAGGGTCCCCACCATCTTCTCCCACACCGACCCGGCGGCGCCGCCGCCGCCGCCGGCCGAAGGCGAGGCCGCGCCACCGCCAGCCGACACGCCACCGTCATACACATGGTGCACGACTACCCGTACACCCACGACCACCACCACGGCCACGGCCACCACCTGTTCGGCCGGGACCACTGGCCGGCGAGCCACCATCCCGCCGGCGGCATGGTCAACTACGGCGGCGGCGCGCCGTACTACGCCGCGCACAGCTACAGCCACAGGGCGAGCCCGTACGTCTCGGAGTACGGCTACGTCGGCTCTCCGGCTCACCATGAGGGCAGATTCTACAGCAGCCATGATTACTACTACCCTGCAGCTGCTGGTGGCAGAGGGAAGGGAGATGGAAGCCAGATCACCTCCATGTTCAGCGATGAGAACCCTAATGCATGCACCATATCCTAATCAACATGCTTTTGCCTGTCAAGAAGTAATTAAGGTGGGGTATTATATAGTATTGATGATTAGTGTTAATTAAGTATTGCTGTTCCATGAGACTTATGTAAAATAGTATTAATTAAGAGGGGTGTCAGTAAGATCAGGAAAAAAGGGGAGCTATAAGACGCTTACT]
[+] EMBL CB685090 [ACGTCCATGCAGCGAGCCAGAAGGTGACGGTTGTCGGGATCGCCGACCCGGAGAGGATCGTCAAGGCGATCAGGAAGACCAAGAGGGTCCCCACCATCTTCTCCCACACCGACCCGGCGGCGCCGCCGCCGCCGCCGGCCGAAGGCGAGGCCGCGCCACCGCCAGCCGACACGCCACCGTCATACACATGGTGCACGACTACCCGTACACCCACGACCACCACCACGGCCACGGCCACCACCTGTTCGGCCGGGACCACTGGCCGGCGAGCCACCATCCCGCCGGCGGCATGGTCAACTACGGCGGCGGCGCGCCGTACTACGCCGCGCACAGCTACAGCCACAGGGCGAGCCCGTACGTCTCGGAGTACGGCTACGTCGGCTCTCCGGCTCACCATGAGGGCAGATTCTACAGCAGCCATGATTACTACTACCCTGCAGCTGCTGGTGGCAGAGGGAAGGGAGATGGAAGCCAGATCACCTCCATGTTCAGCGATGAGAACCCTAATGCATGCACCATATCCTAATCAACATGCTTTTGCCTGTCAAGAAGTAATTAAGGTGGGGTATTATATAGTATTGATGATTAGTGTTAATTA ]
[-] EMBL CB685091 [ GATCCAGAAGGTGCCGGTTGTCGGGATCGCCGACCCGGAGAGGATCGTCAAGGCGATCAGGAAGACCAAGAGGGTTCCCACCATCTTCTCCCACACCGACCCGGCGGAGCCGCCGCCGCCGCCGGCTGAAGGCGAGGCCGCGCCACCGCCAGCCGACACGCCACCGTCATACACATGGTGCACGACTACCCGTACACCCTCGACCACCACCACGGCCACGGCCACCACCTGTTCGGCCGGGACCACTGGCCGGCGAGCCACCATCCCGCCGGCGGCATGGTCAACTACGGCGGCGGCGCGCCGTATTACGCCGCGCACAGGTACAGCCACAGGGCGAGCCCGTACGTCTCGGAGTACGGCTACGTCGGCTCTCCGGCTCACCATGAGGGCAGATTGTACAGCAGCCATGATTAATACTTCCCTGCAGCTGCTGGTGGCAGAGGGAAGGGAGATGGAATCCAGATCACCTCCATGTTCAGCGATGAGAACCCTAATGCATGCACCATATCCTAATCAACATGCTTTTGCCTGTCAAGAAGTAATTAAGGTGGGGTATTATATAGTATTGATGATTAGTGTTAATTCAGTATTGCTGTTCCATGAGACTTATGTAAAATAGTATTAATTAAGAGGGGTGTCAGTAAGATCAGGAAAAAAGGGGAGCTATAAGACGCTTACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7681#0 CTGCCTAGCAACAAAGGTCTTAATTAGGAGCTCTCTCCATTAGGATCCTCGAGCTTCAGG 60
consensus_7681#1 ------------------------------------------------------------
consensus_7681#0 AAGCTATCTCCAACAAAACATACACATTCAGATCAACTTCAGTGATGGCTGCAGAATCAG 120
consensus_7681#1 ------------------------------------------------------------
consensus_7681#0 AGACGCCGCGAATAACAGAGCTTCATGTGAGGATGGACTGCAATGGCTGCGAGCACAAGA 180
consensus_7681#1 ------------------------------------------------------------
consensus_7681#0 TCAGGAAGACTCTGCGTGCCATTGATGGTGTGAGCGAGGTGTACGTAGATGCAGCGAGCC 240
consensus_7681#1 ------------------------------------------ACGTCCATGCAGCGAGCC 18
**** ************
consensus_7681#0 AGAAGGTGACGGTTGTCGGGATCGCCGACCCGGAGAGGATCGTCAAGGCGATCAGGAAGA 300
consensus_7681#1 AGAAGGTGACGGTTGTCGGGATCGCCGACCCGGAGAGGATCGTCAAGGCGATCAGGAAGA 78
************************************************************
consensus_7681#0 CCAAGAGGGTCCCCACCATCTTCTCCCACACCGACCCGGCGGCGCCGCCGCCGCCGCCGG 360
consensus_7681#1 CCAAGAGGGTCCCCACCATCTTCTCCCACACCGACCCGGCGGCGCCGCCGCCGCCGCCGG 138
************************************************************
consensus_7681#0 CCGAAGGCGAGGCCGCGCCACCGCCAGCCGACGCGCCACCGCCGGAGGAAGCACCGGCCG 420
consensus_7681#1 CCGAAGGCGAGGCCGCGCCACCGCCAGCCGACACGCCACCG------------------- 179
******************************** ********
consensus_7681#0 CAGAGCCGGCACCATCAGAAGCGGCGCCGCCGCCGCCGGCGGAAGCCGACCAGGCGGCGG 480
consensus_7681#1 ------------------------------------------------------------
consensus_7681#0 CTCCCCCGGCCACCGACGCTACCGTCATACACATGGTGCACGACTACCCGTACACCCACG 540
consensus_7681#1 ------------------------TCATACACATGGTGCACGACTACCCGTACACCCACG 215
************************************
consensus_7681#0 ACCACCACCACGGCCACGGCCACCACCTGTTCGGCCGGGACCACTGGCCGGCGAGCCACC 600
consensus_7681#1 ACCACCACCACGGCCACGGCCACCACCTGTTCGGCCGGGACCACTGGCCGGCGAGCCACC 275
************************************************************
consensus_7681#0 ATCCCGCCGGCGGCATGGTCAACTACGGCGGCGGCGCGCCGTACTACGCCGCGCACAGCT 660
consensus_7681#1 ATCCCGCCGGCGGCATGGTCAACTACGGCGGCGGCGCGCCGTACTACGCCGCGCACAGCT 335
************************************************************
consensus_7681#0 ACAGCCACAGGGCGAGCCCGTACGTCTCGGAGTACGGCTACGTCGGCTCTCCGGCTCACC 720
consensus_7681#1 ACAGCCACAGGGCGAGCCCGTACGTCTCGGAGTACGGCTACGTCGGCTCTCCGGCTCACC 395
************************************************************
consensus_7681#0 ATGAGGGCAGATTCTACAGCAGCCATGATTACTACTACCCTGCAGCTGCTGGTGGCAGAG 780
consensus_7681#1 ATGAGGGCAGATTCTACAGCAGCCATGATTACTACTACCCTGCAGCTGCTGGTGGCAGAG 455
************************************************************
consensus_7681#0 GGAAGGGAGATGGAAGCCAGATCACCTCCGTGTTCAGCGATGAGAACCCTAATGCATGCA 840
consensus_7681#1 GGAAGGGAGATGGAAGCCAGATCACCTCCATGTTCAGCGATGAGAACCCTAATGCATGCA 515
***************************** ******************************
consensus_7681#0 CCATATCCTAATCAACATGCTTTTGCCTGTCAAGAAGTAATTAAGGTGGGGTATTATATA 900
consensus_7681#1 CCATATCCTAATCAACATGCTTTTGCCTGTCAAGAAGTAATTAAGGTGGGGTATTATATA 575
************************************************************
consensus_7681#0 GTATTGATGATTAGTGTTAATTAAG-ATTACTGTAACATGAGATTTATGTAAAATAGTAT 959
consensus_7681#1 GTATTGATGATTAGTGTTAATTAAGTATTGCTGTTCCATGAGACTTATGTAAAATAGTAT 635
************************* *** **** ******* ****************
consensus_7681#0 TAATTAAGAGGGGTGTAAGTAAGATAAGGAAAAAAGGGGAGCAATAAGATGCTTAACTTG 1019
consensus_7681#1 TAATTAAGAGGGGTGTCAGTAAGATCAGGAAAAAAGGGGAGCTATAAGACGCTTACT--- 692
**************** ******** **************** ****** *****
consensus_7681#0 TAGTAGTGGGAGATGATTTTCCTTGGCAATCACCACTATTTTTTTTTTACCGCCGTCCAC 1079
consensus_7681#1 ------------------------------------------------------------
consensus_7681#0 TACACCTCAAGAGAATCCAACAAAGCTGTGGTCCTGTGTATATGATGTGTACTTGAAAAA 1139
consensus_7681#1 ------------------------------------------------------------
consensus_7681#0 AAAGTGGCAGAGACGTCACAGTATTTCCAGGCCAAATCTAAAAACTTTGTCCTGTCTAGC 1199
consensus_7681#1 ------------------------------------------------------------
consensus_7681#0 ATGTTGGGAATAGAGACATTTTTGTATTCTCTTGAAATATATGTACATCTGATTTGCATC 1259
consensus_7681#1 ------------------------------------------------------------
consensus_7681#0 GCATAAATCTAGAGATCTTATCTTCT 1285
consensus_7681#1 --------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||