These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7694#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 943 fasta sequence [CCAAAGCGAAGAAAGAGCGCGTCCGCGTCGTCGTCGTCGTCCGCCTGCCTGCCTGCCTACCCACGTCGCGCTCGCGTGCGCGCTGCCGCTTAGTCGCGCCAAAAAGGCGGGGGGAGGGGAGGCGCGTGCCTGCCCCCGATCGCATATCGCATTCTCCACTCGCTTGCGTTTGCCGTTGCGTTTGCGTTTTGCGTAGCAAGGGAAGGGAGAGAGCTCGTGCTTTTGGATTGGCCGCGATGAGCTGCGGGGGCGCCGGGCAAGCCGCCGAGGGCCGACAAGGTCTCCATCCTGAGCGACGCCGCCCGTCTCCTGAGCCAGCTGCGCGCCGAGGCCCAGAAGCTCAAGAGCTCGAACGAGTCGCTCCAGGACTCCATCAAGAGCCTCAAGGCCGAGAAGTCGGAGCTGCGTGACGAGAAGACGAGGCTCAAGGCCGAGAGGGAGAGGCTGGAGCAAATGCTCAAGGGCGTCGGCGCCGCCACACCGGCGGCTCCAGCGCCGTTCGTCCCGCACCACGCCGCGGCGGTGGCGGCCGCACCGGCGTACCATCCGGCGGCGTTCGCGCAGGCCGGCGGCAAGTACGTGCCGTACGCCACCAGCTACGCGCCGCCGGCCGCGTTCTGGCAGTGGATACCGCCGACGTCCCTCGACACGTCCAAGGACCCCGTGATGTGGCCGCCGGTTGCATGATCAGCTGCTGCTGTCACCGAAAATGCCGTAGAAATTGACCAAAGAGCACCTGATGAAAGCCTCGGGTGCAGTTATGTGATTGTGTTGTGGATAAATGATCAAGGATCAAGGGATCACCAGAAGAAATTTCCTGGTGATCATTGCTCGCCGGAGCAGTCTATGTAACAACCCAATTGCTAAAGTAATTAAGGCAATTATTATTACATCAAGATGGTGTTTATGTAAAACGTAAAAAAAAACCTCGTCCGAATTCGGC] [+] EMBL AK063498 [CCAAAGCGAAGAAAGAGCGCGTCCGCGTCGTCGTCGTCGTCCGCCTGCCTGCCTGCCTACCCACGTCGCGCTCGCGTGCGCGCTGCCGCTTAGTCGCGCCAAAAAGGCGGGGGGAGGGGAGGCGCGTGCCTGCCCCCGATCGCATATCGCATTCTCCACTCGCTTGCGTTTGCCGTTGCGTTTGCGTTTTGCGTAGCAAGGGAAGGGAGAGAGCTCGTGCTTTTGGATTGGCCGCGATGAGCTGCGGGGGCGCCGGGCAAGCCGCCGAGGGCCGACAAGGTCTCCATCCTGAGCGACGCCGCCCGTCTCCTGAGCCAGCTGCGCGCCGAGGCCCAGAAGCTCAAGAGCTCGAACGAGTCGCTCCAGGACTCCATCAAGAGCCTCAAGGCCGAGAAGTCGGAGCTGCGTGACGAGAAGACGAGGCTCAAGGCCGAGAGGGAGAGGCTGGAGCAAATGCTCAAGGGCGTCGGCGCCGCCACACCGGCGGCTCCAGCGCCGTTCGTCCCGCACCACGCCGCGGCGGTGGCGGCCGCACCGGCGTACCATCCGGCGGCGTTCGCGCAGGCCGGCGGCAAGTACGTGCCGTACGCCACCAGCTACGCGCCGCCGGCCGCGTTCTGGCAGTGGATACCGCCGACGTCCCTCGACACGTCCAAGGACCCCGTGATGTGGCCGCCGGTTGCATGATCAGCTGCTGCTGTCACCGAAAATGCCGTAGAAATTGACCAAAGAGCACCTGATGAAAGCCTCGGGTGCAGTTATGTGATTGTGTTGTGGATAAATGATCAAGGATCAAGGGATCACCAGAAGAAATTTCCTGGTGATCATTGCTCGCCGGAGCAGTCTATGTAACAACCCAATTGCTAAAGTAATTAAGGCAATTA ] [+] EMBL CF326700 [ CGGCGTACCATCCGGCGGCGTTCGCGCATTTCGGCGGCAAGTACGTGCCGTACGCCACCAGCTACGCGCCGCCGGCCGCGTTCTGGCAGTGGATACCGCCGACGTCCCTCGACACGTCCAAGGACCCCGTGATGTGGCCGCCGGTTGCATGATCAGCTGCTGCTGTCACCGAAAATGCCGTTTAAATTGACCAAAGAGCACCTGATGAAAGCCTCGGGTGCAGTTATGTGATTGTGTTGTGGATAAATGATCAAGGATCAAGGGATCACCAGAAGAAATTTCCTGGTGATCATTGCTCGCCGGAGCAGTCTATGTAACAACCCAATTGCTAAAGTAATTAAGGCAATTATTATTACATCAAGATGGTGTTTATGTAAAACGTAAAAAAAAACCTCGTCCGAATTCGGC] consensusID : consensus_7694#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 785 fasta sequence [AAGAGCGCGTCCGCGTCGTCGTCGTCGTCCGCCTGCCTGCCTGCCTACCCACGTCGCGCTCGCGTGCGCGCTGCCGCTTAGTCGCGCCAAAAAGGCGGGGGGAGGGGAGGCGCGTGCCTGCCCCCGATCGCATATCGCATTCTCCACTCGCTTGCGTTTGCCGTTGCGTTTGCGTTTTGCGTAGNAAGNG-GAAGGGAGAGAGCTCGTGCTTTTGGATTGGCCGCGATGAGCTGCGGGGGCGCCGGGCAGAGCGGGTGGCTGCTCGAGTACGGGCTGGTGGAGGAGGAGATCCAGGGCTCCGAC-TTCATCTACATGGTCGACGACCCCGCGGCCGTCTCCAGCGTGCTACTGGGCTTCGACGTTCCCAGGAAGGAGGACGGCAGCGGCGGCCAGGACAACTCTGCCTCCAAGAAAAGATCTCGTCCAGAATCGAGCGCACCGCCGGGCACCAAGGCTTGCCGCGAAAAGCTCCGGCGAGACAGGCTCAATGAAAGGTTCAACGAGCTCAGCGCGATCTTGGAGCCCGGCAAGCCGCCGAGGGCCGACAAGGTCTCCATCCTGAGCGACGCCGCCCGTCTCCTGAGCCAGCTGCGCGCCGAGGCCCAGAAGCTCAAGAGCTCGAACGAGTCGCTCCAGGACTCCATCAAGAGCCTCAAGGCCGAGAAGTCGGAGCTGCGTGACGAGAAGACGAGGCTCAAGGCCGAGAGGGAGAGGCTGGAGCAAATGCTCAAGGGCGTCGGCGCCGCCACACCGGCGGCTCCAGCGCCGTTCGTCCCGCACCACGC] [+] EMBL OSS11183A [AAGAGCGCGTCCGCGTCGTCGTCGTCGTCCGCCTGCCTGCCTGCCTACCCACGTCGCGCTCGCGTGCGCGCTGCCGCTTAGTCGCGCCAAAAAGGCGGGGGGAGGGGAGGCGCGTGCCTGCCCCCGATCGCATATCGCATTCTCCACTCGCTTGCGTTTGCCGTTGCGTTTGCGTTTTGCGTA NAAGNG GAAGGGAGAGAGCTCGTGCTTTTGGATTGGCCGCGATGAGCTNCGGGGGCGCCGGGCAGAGCGGGTGGCTGCTCGAGTACGGGCTGGTGGAGGAGGAGATCCAGGGCTCCGAC TTCATCTACATGGTCGACGACCCCGCGG ] [+] EMBL AU093287 [ CGTAGCAAG G GAA GGAGAGAGCTCGTGCTTTTGGATTGCCCGCGATGAGCTGCGGGGGCGCCGGGCAGAGCGGGTGGCTGCTCGAGTACGGGCTGGTGAAGAAGGAGATCCAGGGCTCCGACTTTCATCTACATGGTCGACGACCCCGCGGCCGTCTCCAGCGTGCTACTGGGCTTCGACGTTCCCAGGAAGGAGGACGGCAGCGGCGGCCAGGACAACTCTGCCTCCAAGAAAAGATCTCGTCCAGAATCGAGCGCACCGCCGGGCACCAAGGCTTGCCGCGAAAAGCTCCGGCGAGACAGGCTCAATGAAAGGTTCAACGAGCTCAGCGCGATCTTGGAGCCCGGCAAGCCGCCGAGGGCCGACAAGGTCTCCATCCTGAGCGACGCCGCCCGTCTCCTGAGCCAGCTGCGCGCCGAGGCCCAGAAGCTCAAGAGCTCGAACGAGTCGCTCCAGGACTCCATCAAGAGCCTCAAGGCCGAGAAGTCGGAGCTGCGTGACGAGAAGACGAGGCTCAAGGCCGAGAGGGAGAGGCTGGAGCAAATGCTCAAGGGCGTCGGCGCCGCCACACCGGCGGCTCCAGCGCCGTTCGTCCCGCACCACGC] [+] EMBL AU063157 [ cntagAGNGNGAAGGGAGAGAGCTCGTGCTTTTGGATTNGCCGCGATNAGCTGCGGGGGCGCCGGGCAGAGCGGGTNGCTGCTCGAGTACGGGCTGGTGGAGGAGGAGATCCAGGGCTCCGAC TTCATCTACATNGTCGACNACCCCNCGGCCGTCTCCAGCGTGCTACTNGGCTTCGACGTTCCCAGGAAGGAGGACGGCAGCGGCNGCCAGGACAACTCTNCCTCCAAGAAAAGATCTCGTNCAGAATCGAGCGCACCGCNGGc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7694#0 CCAAAGCGAAGAAAGAGCGCGTCCGCGTCGTCGTCGTCGTCCGCCTGCCTGCCTGCCTAC 60 consensus_7694#1 ------------AAGAGCGCGTCCGCGTCGTCGTCGTCGTCCGCCTGCCTGCCTGCCTAC 48 ************************************************ consensus_7694#0 CCACGTCGCGCTCGCGTGCGCGCTGCCGCTTAGTCGCGCCAAAAAGGCGGGGGGAGGGGA 120 consensus_7694#1 CCACGTCGCGCTCGCGTGCGCGCTGCCGCTTAGTCGCGCCAAAAAGGCGGGGGGAGGGGA 108 ************************************************************ consensus_7694#0 GGCGCGTGCCTGCCCCCGATCGCATATCGCATTCTCCACTCGCTTGCGTTTGCCGTTGCG 180 consensus_7694#1 GGCGCGTGCCTGCCCCCGATCGCATATCGCATTCTCCACTCGCTTGCGTTTGCCGTTGCG 168 ************************************************************ consensus_7694#0 TTTGCGTTTTGCGTAGCAAGGG-AAGGGAGAGAGCTCGTGCTTTTGGATTGGCCGCGATG 239 consensus_7694#1 TTTGCGTTTTGCGTAGNAAGNGGAAGGGAGAGAGCTCGTGCTTTTGGATTGGCCGCGATG 228 **************** *** * ************************************* consensus_7694#0 AGCTGCGGGGGCGCCGGGCAAGCCGCCGAGGGCCGACAAGGTCTCCATCCTGAGCGACGC 299 consensus_7694#1 AGCTGCGGGGGCGCCGGGCAGAGCG--GGTGGCTGCTCGAGTA--CGGGCTG-GTGGAGG 283 ******************** ** * *** * ** * *** * * * consensus_7694#0 CGCCCGTCTCCTGAGCCAGCTGCGCGC-CGAGGCCCAGAAGCTCAAGAGCTCGAACGAGT 358 consensus_7694#1 AGGAGATCCAGGGCTCCGACTTCATCTACATGGTCGACGACCCCGCGGCCGTCTCCAGCG 343 * ** * ** ** * * ** * * * * * * * * consensus_7694#0 CGCTCCAGGACTCCATCAAGAGCCTCAAGGCCGAGAAGTCGGAGCTGCGTGACGAGAAGA 418 consensus_7694#1 TGCTACTGGGCTTCGAC----GTTCCCAGGAAGGAGGACGGCAGCGGCG----GCCAGGA 395 *** * ** ** * * * * *** * * *** *** * * ** consensus_7694#0 CGAGGCTCAAGGCCGAGAGGGAGAGGCTGGAGCAAATGCTCAAGGGCGTCGGCGCCGCCA 478 consensus_7694#1 CAACTCT---GCCTCCAAGAAAAGATCTCGTCCAGA--ATCGAGCGCACCGCCGG-GCAC 449 * * ** * * ** * ** * ** * ** ** ** ** ** ** consensus_7694#0 CACCGGCGGCTCCAGCGCCGTTCGTCCCGCACCACGCCGCGGCGGTGGCGGCCGCACCGG 538 consensus_7694#1 CAAGGCTTGCCGCGAAAAGCTCCGGCGAGACAGGCTCAATGAAAGGTTCAACGAGCTCAG 509 ** * ** * * ** * * * * * * * * * * consensus_7694#0 CGTACCATCCGGCGGCGTTCGCGCAGGCCGGCGGCAAGTACGTGCCGTACGCCACCAGCT 598 consensus_7694#1 CGCG--ATCT--TGGAGCCCG-GCAAGCCGCCG--AGGGCCGACAAGGTCTCCATC--CT 560 ** *** ** * ** *** **** ** * * ** * * *** * ** consensus_7694#0 ACGCGCCGCCGGCCGCGTTCTGGCAGTGGATAC-CGCCGACGTCCCTCGACACGTCCAAG 657 consensus_7694#1 GAGCGACGCCGCCCGTCTCCTGA-GCCAGCTGCGCGCCGAGGCCC----AGAAGCTCAAG 615 *** ***** *** * *** * * * ****** * ** * * * **** consensus_7694#0 GACCCCGTGATGTGGCCGCCGGTTGCATGATCAGCTGCTGCTGTCACCGAAAATGCCGTA 717 consensus_7694#1 AGCTCGAACGAGTCGCTCCAGG--ACTCCATCAAGAGCC-TCAAGGCCGAGAA----GTC 668 * * ** ** * ** * **** ** **** ** ** consensus_7694#0 GAAATTGACCAAAGAGCACCTGATGAAAGCCTCGGGTGCAGTTATGTGATTGTGTTGTGG 777 consensus_7694#1 GGAGCTGCGTGACGAGAA---GACGAGGCTCAAGGCCGAGAGGGAGAGGCTG------GA 719 * * ** * *** * ** ** * ** * * * ** * consensus_7694#0 ATAAATGATCAAGGATCAAGGGATCACCAGAAGAAATTTCCTGGTGATCATTGCTCGCCG 837 consensus_7694#1 GCAAATGCTCAAGGGCGTCGGCGCCGCCACACCGGCGGCTCCAGCG-CCGTTCGTC-CCG 777 ***** ****** ** * *** * * * * * ** ** *** consensus_7694#0 GAGCAGTCTATGTAACAACCCAATTGCTAAAGTAATTAAGGCAATTATTATTACATCAAG 897 consensus_7694#1 CACCACGC---------------------------------------------------- 785 * ** * consensus_7694#0 ATGGTGTTTATGTAAAACGTAAAAAAAAACCTCGTCCGAATTCGGC 943 consensus_7694#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||