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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7696#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1161 fasta sequence
[AAGTGCCCGTACTGCCACAGCGGCTTCGTCGAGGAGATCGAGTCCGCGCGCGGCGTCGCCACCGGCGGCGGCGGCGCGATCTCCTCCGTCTGGGCCCCCATCATCGACGGCATGGTTGGCGGCGGCGGCGGCGACGCGTCCGCCGCCACCGCCGCAGCCGTCGCCTCGCGGACGCCGCCGGCGCGGACGACGGCTACTACCGCGACCTGGCCCTCCTCGACTTCTCCGAGAGCCGGCGGCGCACCGCCGCGCTGCTGCTGCTCATGCAGGAGTTTCGGGAGCGCCAGCTCCAGCGCCTCGAGTCCGCCACCGCCACGATCTCCGCCGCCGCGGCCGAGGCCGGCGCCGTCGTCGGGACCTCGAGAGACGCGGAGGGCGTGGCGCTGGCCGACTACTTCCTCGGCCCCGGCCTGGACGCCCTGATGCAGCGGGTGGGCGACGGCGACGCGGAGCGGCAGGGCACGCTCCCGGCCAAGAAGGAGGCCGTGGAGTCCATGCCGACGGTGGAGGTGGCCGCCGGGGGCGACTGCGACTCCGCCTGCGCCGTCTGCCTCGAGGACTACGCCGCCGGCGAGCGCGCCACGGAAATGCCGTGCCGGCACAGGTTCCACGCCAAGTGCATCGTGCCGTGGCTCAAGATGCACAGCTCCTGCCCCGTCTGCCGCTTCCAGCTCCCCACCGACGACGACGACGACTCCTCCAAGTCCGCACGCGGCGGCGCCGCCCACTCCGGCGGCGGCCGGCGGTTGTCCCAGCCGGCGCCGCGGGTCGACGGGGG-AGGCCTGGGCAGGTTGCCGGCCGTGATGCAGGAGCTCAGGAGCATCCTCTCCCAGCCGTCGCCGGCG-TCGAC-TTCCGGCAGCAGCTCGCACGCGCAGCAGCAC-AGCGACGAGTGA-TGACGAC-TCAGGA-TGGT-CGCCGGTCACCGGCGGTGC-TGC-TGCTCC-GGCGACCGGCGGAGGAGCTCATGGTTTTGCAACTTTGACAATGTACATAATCCGGGGTTCGTCGTCGCTGTGGTGACTGGCTTTGGTGCCAATGGAACTTCATTTTTCCTCGTCTCCCCTTTCTTTAGCAATCATCTTGTGATATATCCCATGATTTTAATATACAATTTGCGTTCGGCGGAAAATGGNGTAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAA]
[+] EMBL AK071739 [AAGTGCCCGTACTGCCACAGCGGCTTCGTCGAGGAGATCGAGTCCGCGCGCGGCGTCGCCACCGGCGGCGGCGGCGCGATCTCCTCCGTCTGGGCCCCCATCATCGACGGCATGGTTGGCGGCGGCGGCGGCGACGCGTCCGCCGCCACCGCCGCAGCCGTCGCCTCGCGGACGCCGCCGGCGCGGACGACGGCTACTACCGCGACCTGGCCCTCCTCGACTTCTCCGAGAGCCGGCGGCGCACCGCCGCGCTGCTGCTGCTCATGCAGGAGTTTCGGGAGCGCCAGCTCCAGCGCCTCGAGTCCGCCACCGCCACGATCTCCGCCGCCGCGGCCGAGGCCGGCGCCGTCGTCGGGACCTCGAGAGACGCGGAGGGCGTGGCGCTGGCCGACTACTTCCTCGGCCCCGGCCTGGACGCCCTGATGCAGCGGGTGGGCGACGGCGACGCGGAGCGGCAGGGCACGCTCCCGGCCAAGAAGGAGGCCGTGGAGTCCATGCCGACGGTGGAGGTGGCCGCCGGGGGCGACTGCGACTCCGCCTGCGCCGTCTGCCTCGAGGACTACGCCGCCGGCGAGCGCGCCACGGAAATGCCGTGCCGGCACAGGTTCCACGCCAAGTGCATCGTGCCGTGGCTCAAGATGCACAGCTCCTGCCCCGTCTGCCGCTTCCAGCTCCCCACCGACGACGACGACGACTCCTCCAAGTCCGCACGCGGCGGCGCCGCCCACTCCGGCGGCGGCCGGCGGTTGTCCCAGCCGGCGCCGCGGGTCGACGGGGG AGGCCTGGGCAGGTTGCCGGCCGTGATGCAGGAGCTCAGGAGCATCCTCTCCCAGCCGTCGCCGGCG TCGAC TTCCGGCAGCAGCTCGCACGCGCAGCAGCAC AGCGACGAGTGA TGACGAC TCAGGA TGGT CGCCGGTCACCGGCGGTGC TGC TGCTCC GGCGACCGGCGGAGGAGCTCATGGTTTTGCAACTTTGACAATGTACATAATCCGGGGTTCGTCGTCGCTGTGGTGACTGGCTTTGGTGCCAATGGAACTTCATTTTTCCTCGTCTCCCCTTTCTTTAGCAATCATCTTGTGATATATCCCATGATTTTAATATACAATTTG ]
[+] EMBL C72938 [ CTCAAGATGCACAGCTCCTGCCCCGTCTGCCGCTTCCAGCTCCCCACCGACGACGACGACGACTCCTCCAAGTCCGCACGCGGCGGCGCCGCNCACTCCGGNGGCGGCCGGCGGTTGTCCCAGCCGGCGCCGCGGGTCGACGGGGG AGGCCTGGGCAGGTTGCCGGCCGTGATGCAGGAGCTCAGGAGCATCCTCTCCCAGCCGTCGCCGGCGTTCGACTTTCCGGCAGCAGCTCGCACGCGCANAGGCACAAGCGACGAGTGATTGACGACTTCAGGATTGGTCCGCGGTTCACCGG GGTTCTTGCTTGCTCCGGGCGA ]
[+] EMBL AU081286 [ cnCGGGTCGACGGGGGAAGGCCTGGGCAGGTTNCCGGCCGTGATGCAGGAGCTCAGGAGCATCCTCTCCCAGCCGTCGCCGGNG TCGAC TTCCGGCAGCAGCTCGCACGCGCAGCAGCAC AGCGACGAGTGA TGACGAC TCAGGN TGGT CGCCGGTCACCGGCGGTGC TGC TGCTCC GGCGACCGGCNGAGGAGCTCATGGTTTTGCAACTTTGACAATGTACATAATCCGGGGTTCGTCGTCGCTGTGGTGACTGGCTTTGGTGCCAATGGAACTTCATTTTTCCTCGTCTCCCCTTTCTTTAGCAATCATCTTGTGATATATCCCATGATTTTAATATACAATTTGCGTTCGGCGGAAAATGGNGTAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAA]
consensusID : consensus_7696#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 947 fasta sequence
[AGGTGGAGATCAAGTGCCCGTACTGCCACAGCGGCTTCGTCGAGGAGATCGAGTCCGCGCGCGGCGTCGCCACCGGCGGCGGCGGCGCGATCTCCTCCGTCTGGGCCCCCATCATCGACGGCATGGTTGGCGGCGGCGGCGGCGACGCCGTCCGCCGCCACCGCCGCAGCCGTCGCCTCGCGGACGCCGCCGGCGCGGACGACGGCTACTACCGCGACCTGGCCCTCCTCGACTTCTCCGAGAGCCGGCGGCGCACCGCCGCGCTGCTGCTGCTCATGCAGGAGTTTCGGGAGCGCCAGCTCCAGCGCCTCGAGTCCGCCACCGCCACGATCTCCGCCGCCGCGGCCGAGGCCGGCGCCGTCGTCGGGACCTCGAGAGACGCGGAGGGCGTGGCGCTGGCCGACTACTTGCTCGGTCCCGGCCTGTACGCCCTGATGCAGCGGGTGGGCGACGGCGACGCGGTGCGGTAGGGCACGCTCGCCGACAATAAGGAGGTCGAGGGTTTCTGCCAACAGTTCTGGTTGTCTTCGTGGGCTGCTGTGACGTCCTCTTCTCATATATCTATGATACTGTGCTCACCAGAATACTTCCTTACTTGCTGTGCTCCTCAGAATCACGGGGTCACTGATACCCGGGTGTCTTCCCCAGTCTATCTCTACGCGTCTAACTTTTAACCCCTTGTAACTTTTACTACCTATCCACTGTAAGGACATATTTTCTGAAATGTTTTTTTATTATTAACAAACTGCTGTATAATTTGTTACATCGTGATCTGTGTATATTAATGGTTGTTTCCTAGTTACTTATGTTTCATAAACGTTATATTTGTAGTGGTTTTTATCATGCTGAAATTCTACAACACTTCTACTTGAACCGAGTCTCTAATTTTACTTTGTATTTGACGGCAGTTTCCTTCGCGCAATATATATGAATAGATTGTTGTATCC]
[+] EMBL BE040717 [AGGTGGAGATCAAGTGCCCGTACTGCCACAGCGGCTTCGTCGAGGAGATCGAGTCCGCGCGCGGCGTCGCCACCGGCGGCGGCGGCGCGATCTCCTCCGTCTGGGCCCCCATCATCGACGGCATGGTTGGCGGCGGCGGCGGCGACGCCGTCCGCCGCCACCGCCGCAGCCGTCGCCTCGCGGACGCCGCCGGCGCGGACGACGGCTACTACCGCGACCTGGCCCTCCTCGACTTCTCCGAGAGCCGGCGGCGCACCGCCGCGCTGCTGCTGCTCATGCAGGAGTTTCGGGAGCGCCAGCTCCAGCGCCTCGAGTCCGCCACCGCCACGATCTCCGCCGCCGCGGCCGAGGCCGGCGCCGTCGTCGGGACCTCGAGAGACGCGGAGGGCGTGGCGCTGGCCGACTACTTGCTCGGTCCCGGCCTGTACGCCCTGATGCAGCGGGTGGGCGACGGCGACGCGGTGCGGTAGGGCACGCTCGCCGACAATAAGGAGGTCGAGGGTTTCTGCCAACAGTTCTGGTTGTCTTCGTGGGCTGCTGTGACGTCCTCTTCTCATATATCTATGATACTGTGCTCACCAGAATACTTCCTTACTTGCTGTGCTCCTCAGAATCACGGGGTCACTGATACCCGGGTGTCTTCCCCAGTCTATCTCTACGCGTCTAACTTTTAACCCCTTGTAACTTTTACTACCTATCCACTGTAAGGACATATTTTCTGAAATGTTTTTTTATTATTAACAAACTGCTGTATAATTTGTTACATCGTGATCTGTGTATATTAATGGTTGTTTCCTAGTTACTTATGTTTCATAAACGTTATATTTGTAGTGGTTTTTATCATGCTGAAATTCTACAACACTTCTACTTGAACCGAGTCTCTAATTTTACTTTGTATTTGACGGCAGTTTCCTTCGCGCAATATATATGAATAGATTGTTGTATCC]
consensusID : consensus_7696#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence
[AAGTGCCCGTACTGCCACAGCGGCTTCGTCGAGGAGATCGAGTCCGCGCGCGGCGTCGCCACCGGGGCGGCGGCGCGATCTCCTCCGTCTGGGCCCCCATCATCGACGGCATGGTTTNCCAGCGGCGGCGGCGAGCTTCACGCGCAACNCGCCGNAAGCCGTCGCTTCGCGGACGCCGCCGGGCGGACGACGCTAATAACGCAATTGGCCTCCTTGAATTTTCG]
[+] EMBL AU081287 [AAGTGCCCGTACTGCCACAGCGGCTTCGTCGAGGAGATCGAGTCCGCGCGCGGCGTCGCCACCGGGGCGGCGGCGCGATCTCCTCCGTCTGGGCCCCCATCATCGACGGCATGGTTTNCCAGCGGCGGCGGCGAGCTTCACGCGCAACNCGCCGNAAGCCGTCGCTTCGCGGACGCCGCCGGGCGGACGACGCTAATAACGCAATTGGCCTCCTTGAATTTTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7696#0 -----------AAGTGCCCGTACTGCCACAGCGGCTTCGTCGAGGAGATCGAGTCCGCGC 49
consensus_7696#2 -----------AAGTGCCCGTACTGCCACAGCGGCTTCGTCGAGGAGATCGAGTCCGCGC 49
consensus_7696#1 AGGTGGAGATCAAGTGCCCGTACTGCCACAGCGGCTTCGTCGAGGAGATCGAGTCCGCGC 60
*************************************************
consensus_7696#0 GCGGCGTCGCCACCGGCGGCGGCGGCGCGATCTCCTCCGTCTGGGCCCCCATCATCGACG 109
consensus_7696#2 GCGGCGTCGCCACCGG-GGCGGCGGCGCGATCTCCTCCGTCTGGGCCCCCATCATCGACG 108
consensus_7696#1 GCGGCGTCGCCACCGGCGGCGGCGGCGCGATCTCCTCCGTCTGGGCCCCCATCATCGACG 120
**************** *******************************************
consensus_7696#0 GCATGGTTGGC-GGCGGCGGCGGCGACGC-GTCCGCCGCCACC-GCCGCA-GCCGTCGCC 165
consensus_7696#2 GCATGGTTTNCCAGCGGCGGCGGCGA-GC-TTCACGCGCAACNCGCCGNAAGCCGTCGCT 166
consensus_7696#1 GCATGGTTGGC-GGCGGCGGCGGCGACGCCGTCCGCCGCCACC-GCCGCA-GCCGTCGCC 177
******** * ************* ** ** *** ** **** * ********
consensus_7696#0 TCGCGGACGCCGCCGGCGCGGACGACGGCTACTACCGCGACCTGGCCCTCCTCGACTTCT 225
consensus_7696#2 TCGCGGACGCCGCCGG-GCGGACGACG-CTAATAACGCAA--TTGGCCTCCTTGAATTTT 222
consensus_7696#1 TCGCGGACGCCGCCGGCGCGGACGACGGCTACTACCGCGACCTGGCCCTCCTCGACTTCT 237
**************** ********** *** ** *** * * * ****** ** ** *
consensus_7696#0 CCGAGAGCCGGCGGCGCACCGCCGCGCTGCTGCTGCTCATGCAGGAGTTTCGGGAGCGCC 285
consensus_7696#2 CG---------------------------------------------------------- 224
consensus_7696#1 CCGAGAGCCGGCGGCGCACCGCCGCGCTGCTGCTGCTCATGCAGGAGTTTCGGGAGCGCC 297
*
consensus_7696#0 AGCTCCAGCGCCTCGAGTCCGCCACCGCCACGATCTCCGCCGCCGCGGCCGAGGCCGGCG 345
consensus_7696#2 ------------------------------------------------------------
consensus_7696#1 AGCTCCAGCGCCTCGAGTCCGCCACCGCCACGATCTCCGCCGCCGCGGCCGAGGCCGGCG 357
consensus_7696#0 CCGTCGTCGGGACCTCGAGAGACGCGGAGGGCGTGGCGCTGGCCGACTACTTCCTCGGCC 405
consensus_7696#2 ------------------------------------------------------------
consensus_7696#1 CCGTCGTCGGGACCTCGAGAGACGCGGAGGGCGTGGCGCTGGCCGACTACTTGCTCGGTC 417
consensus_7696#0 CCGGCCTGGACGCCCTGATGCAGCGGGTGGGCGACGGCGACGCGGAGCGGCAGGGCACGC 465
consensus_7696#2 ------------------------------------------------------------
consensus_7696#1 CCGGCCTGTACGCCCTGATGCAGCGGGTGGGCGACGGCGACGCGGTGCGGTAGGGCACGC 477
consensus_7696#0 TCCCGGCCAAGAAGGAGGCCGTGGAGTCCATGCCGACGGTGGAGGTGGCCGCCGGGGGCG 525
consensus_7696#2 ------------------------------------------------------------
consensus_7696#1 TCGCCGACAATAAGGAGGTCGAGG-GTTTCTGCCAACAGTTCTGGTTGTCTTCGTGGGCT 536
consensus_7696#0 ACTGCGACTCCGCCTGCGCCGTCTGCCTCGAGGACTACGCCGCCGGCGAGCGCGCCACGG 585
consensus_7696#2 ------------------------------------------------------------
consensus_7696#1 GCTGTGACGTCCTCTTC-TCATATATCTATGATACTGTGCT-----------CACCAGAA 584
consensus_7696#0 AAATGCCGTGCCGGCACAGGTTCCACGCCAAGTGCATCGTGCCGTGGCTCAAGATGCACA 645
consensus_7696#2 ------------------------------------------------------------
consensus_7696#1 TACTTCCTTACTTGC-TGTGCTCCTCA------GAATCACGGGGTCACT-GATACCCGGG 636
consensus_7696#0 GCTCCTGCCCCGTCTGCCGCTTCCAGCTCCCCACCGACGACGACG-ACGACTCCTCCAAG 704
consensus_7696#2 ------------------------------------------------------------
consensus_7696#1 TGTCTTCCCCAGTCTATCTCTAC--GCGTCTAACTTTTAACCCCTTGTAACTTTTACTA- 693
consensus_7696#0 TCCGCACGCGGCGGCGCCGCCCACTCCGGCGGCGGCCGGCGGTTGTCC-CAGCCGGCGCC 763
consensus_7696#2 ------------------------------------------------------------
consensus_7696#1 CCTATCCACTGTAAGGACATATTTTCTGA-AATGTTTTTTTATTATTAACAAACTGCTGT 752
consensus_7696#0 GCGGGTCGACGGGG-GAGGCCTGGGCAGGTTGCCGGCCGTGATGCAGGAGCTCAGGAGCA 822
consensus_7696#2 ------------------------------------------------------------
consensus_7696#1 ATAATTTGTTACATCGTGATCTGTGTATATTAATGGTTGTTTCCTAGTTACTTATG---- 808
consensus_7696#0 TCCTCTCCCAGCCGTCGCCGGCGTCGACTTCCGGCAGCAGCTCGCACGCGCAGCAGCACA 882
consensus_7696#2 ------------------------------------------------------------
consensus_7696#1 ---TTTCATAAACGTTATATTTGTAGTGGTTTT-TATCATGCTG-AAATTCTACAACACT 863
consensus_7696#0 GCGACGAGTGATGACGACTCAGGATGGTCGCCGGTCACCGGCGGTGCTGCTGCTCCGGCG 942
consensus_7696#2 ------------------------------------------------------------
consensus_7696#1 TCTACTTGAACCGA-GTCTCTA-ATTTTACTTTGTATTTGACGGCAGTTTCCTTCGCGCA 921
consensus_7696#0 ACCGGCG-GAGGAGCTCATGGTTTTGCAACTTTGACAATGTACATAATCCGGGGTTCGTC 1001
consensus_7696#2 ------------------------------------------------------------
consensus_7696#1 ATATATATGAATAGATTGTTGTATCC---------------------------------- 947
consensus_7696#0 GTCGCTGTGGTGACTGGCTTTGGTGCCAATGGAACTTCATTTTTCCTCGTCTCCCCTTTC 1061
consensus_7696#2 ------------------------------------------------------------
consensus_7696#1 ------------------------------------------------------------
consensus_7696#0 TTTAGCAATCATCTTGTGATATATCCCATGATTTTAATATACAATTTGCGTTCGGCGGAA 1121
consensus_7696#2 ------------------------------------------------------------
consensus_7696#1 ------------------------------------------------------------
consensus_7696#0 AATGGNGTAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAA 1161
consensus_7696#2 ----------------------------------------
consensus_7696#1 ----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||