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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1371 fasta sequence
[ACCACTATCTCTGCCAAAACCAAACCAGAAACACACACCAAACACACAAGACAAGGTAGCAACAACAATGGCGAGACATGGCCCTCAAAGCCATGACCAACCACTCCAAGAAGAGGACTACATAGACATGGACCTGAGCTCACCTGCAGCGGCAGAGGCGGTGACTGCCAGTGCCAGAGCAAGCTTGCTCTGCTACAGCACAGCCATGGCAGCCTCCCCACAAAACTCAAGGGAGTTCGAGTTCCACATGTCGGCTCCGGTTGACAAGTGGGAGCCCGCGGCATCACCAGCCGATGAGCTCTTCTACAAGGGCAAGCTACTGCCGCTCCACCTTCCACCACGCATCCAGATGGTCGAGAAGCTCCTCGAGAGTGCAGCTGAGAAGGGCCTCCTCTCCGCGAGCACTGCCCCAGCAACGCCATACCAGTCGTGCAATGCATCACCGGCAAATTCATGTTATGTCAGTGGAGAGCTCAATGCTGAGCATTACTTCCACGAGTGCACATCAGCTGGTATTGGTGCTGCTGAGGAGGCCGCCGCCTGCGAAAAGAAGCCATGGTCCAAGAAGCTCAAGTTCATCAGGCATCTCAACCTTGGCCTCAAGCTCAAGGCATCAAAAGCTTATATCAAGACAATATTTGCCACTAAAGCAGGCAATCCAGATGGCAAGACTGGTACACCTAGTGCAAATGAGCTCTCCAATGCGCAGTTCAAGTCTTGGAGGAAGAACCCATTTGGCCAGATCAGAAGCAACAGGTACATAGCCTCGCCTATCAGCAACAGTGTCACACTTGGAGGGAGGCTTAAAGAAGATGAGTGCGGCCACAGGAGGTCCTTCTCCAGCGTCATTATTCGATACTCATCATCAAACAAGACATCCTCAGCGTCATCATCGTCATGCTCTTCATCAAATTCATCCTCCTCCATACTAAGCTCCACTGACTCTGGTGTGGGGCCAGTGCTCAGGAGGAGCAGCAGTGCAAGCTCAGAGATGGACAATCCAATCCAGGGAGCAATAGCATACTGCAAAAGGTCACAGCAACTGGCCTCGGTGAGAAAGAGTGCAAGCGATGCAGGTTTCCGTTTCATGTCATCATCAGCGTCAAGGATAGCTGCAGAGTCTGAAGATCCAGATGATATAATTGAGATTTGTGGACGATGAAGTGTTTATGTACAAATTTAAACACTTTTGCTAATTCTGTACACTTTTGATCTTCAGATACCTGCAGACATGATCTTATAATGTCCTTCAGAAAAATTCAAGTAGCTTGTGTAATTTGTGTAAGAACAAATAGTTTCAAATTTCTAATTCTAATCTTTAACACCAAATAGTGTAAGCACTTGGAATGACTGTCTAATACCAGAGTGCAG]
[+] EMBL AK064231 [ACCACTATCTCTGCCAAAACCAAACCAGAAACACACACCAAACACACAAGACAAGGTAGCAACAACAATGGCGAGACATGGCCCTCAAAGCCATGACCAACCACTCCAAGAAGAGGACTACATAGACATGGACCTGAGCTCACCTGCAGCGGCAGAGGCGGTGACTGCCAGTGCCAGAGCAAGCTTGCTCTGCTACAGCACAGCCATGGCAGCCTCCCCACAAAACTCAAGGGAGTTCGAGTTCCACATGTCGGCTCCGGTTGACAAGTGGGAGCCCGCGGCATCACCAGCCGATGAGCTCTTCTACAAGGGCAAGCTACTGCCGCTCCACCTTCCACCACGCATCCAGATGGTCGAGAAGCTCCTCGAGAGTGCAGCTGAGAAGGGCCTCCTCTCCGCGAGCACTGCCCCAGCAACGCCATACCAGTCGTGCAATGCATCACCGGCAAATTCATGTTATGTCAGTGGAGAGCTCAATGCTGAGCATTACTTCCACGAGTGCACATCAGCTGGTATTGGTGCTGCTGAGGAGGCCGCCGCCTGCGAAAAGAAGCCATGGTCCAAGAAGCTCAAGTTCATCAGGCATCTCAACCTTGGCCTCAAGCTCAAGGCATCAAAAGCTTATATCAAGACAATATTTGCCACTAAAGCAGGCAATCCAGATGGCAAGACTGGTACACCTAGTGCAAATGAGCTCTCCAATGCGCAGTTCAAGTCTTGGAGGAAGAACCCATTTGGCCAGATCAGAAGCAACAGGTACATAGCCTCGCCTATCAGCAACAGTGTCACACTTGGAGGGAGGCTTAAAGAAGATGAGTGCGGCCACAGGAGGTCCTTCTCCAGCGTCATTATTCGATACTCATCATCAAACAAGACATCCTCAGCGTCATCATCGTCATGCTCTTCATCAAATTCATCCTCCTCCATACTAAGCTCCACTGACTCTGGTGTGGGGCCAGTGCTCAGGAGGAGCAGCAGTGCAAGCTCAGAGATGGACAATCCAATCCAGGGAGCAATAGCATACTGCAAAAGGTCACAGCAACTGGCCTCGGTGAGAAAGAGTGCAAGCGATGCAGGTTTCCGTTTCATGTCATCATCAGCGTCAAGGATAGCTGCAGAGTCTGAAGATCCAGATGATATAATTGAGATTTGTGGACGATGAAGTGTTTATGTACAAATTTAAACACTTTTGCTAATTCTGTACACTTTTGATCTTCAGATACCTGCAGACATGATCTTATAATGTCCTTCAGAAAAATTCAAGTAGCTTGTGTAATTTGTGTAAGAACAAATAGTTTCAAATTTCTAATTCTAATCTTTAACACCAAATAGTGTAAGCACTTGGAATGACTGTCTAATACCAGAGTGCAG]
[+] EMBL AU222936 [ ACAAGACAAGGTAGCAACAACAATGGCGAGACATGGCCCTCAAAGCCATGACCAACCACTCCAAGAAGAGGACTACATAGACATGGACCTGAGCTCACCTGCAGCGGCAGAGGCGGTGACTGCCAGTGCCAGAGCAAGCTTGCTCTGCTACAGCACAGCCATGGCAGCCTCCCCACAAAACTCAAGGGAGTTCGAGTTCCACATGTCGGCTCCGGTTGACAAGTGGGAGCCCGCGGCATCACCAGCCGATGAGCTCTTCTACAAGGGCAAGCTACTGCCGCTCCACCTTCCACCACGCATCCAGATGGTCGAGAAGCTCCTCGAGAGTGCAGCTGAGAAGGGCCTCCTCTCCGCGAGCACTGCCCCAGCAACGCCATACCAGTCGTGCAATGCATCACCGGCAAATTCATGTTATGTCAGTGGAGAGCTCAATGCTGAGCATTACTTC ]
[+] EMBL AU222937 [ CAGGAGGTCCTTCTCCAGCGTCATTATTCGATACTCATCATCAAACAAGACATCCTCAGCGTCATCATCGTCATGCTCTTCATCAAATTCATCCTCCTCCATACTAAGCTCCNCTGACTCTGGTGTGGGGCCAGTGCTCAGGAGGAGCAGCAGTGCAAGCTCAGAGATGGACAATCCAATCCAGGGAGCAATAGCATACTGCAAAAGGTCACAGCAACTGGCCTCGGTGAGAAAGAGTGCAAGCGATGCAGGTTTCCGTTTCATGTCATCATCAGCGTCAAGGATAGCTGCAGAGTCTGAAGATCCAGATGATATAATTGAGATTTGCGGACGATGAAGTGTTTATGTACAAATTTAAACACTTTTGCTAATTCTGTACACTTTTGATCTTCAGATACCTGCAGACATGATCTTATAATGTCCTTCAGAAAAAaa ]
consensusID : consensus_7700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence
[ACAAGACAAGGTAGCAACAACAATGGCGAGACATGGCCCTCAAAGCCATGACCAACCACTCCAAGAAGAGGACTACATAGACATGGACCTGAGCTCACCTGCAGCGGCAGAGGCGGTGACTGCCAGTGCCAGAGCAAGCTTGCTCTGCTACAGCACAGCCATGGCAGCCTCCCCACAAAACTCAAGGGAGTTCGAGTTCCACATGTCGGCTCCGGTTGACAAGTGGGAGCCCGCGGCATCACCAGCCGATGAGCTCTTCTACAAGGGCAAGCTACTGCCGCTCCACCTTCCACCACGNATCCAGATGGTCGAGAAGCTTCTCGAGAGTTCAGTTGAGAAGGGNCTTCTCTTCGCGAGCACTTGCCCAGCAACGGCATACCAGTCGTGCAATGATNACCGGCAATTCATGTTATGTCAGTGGGGGCTNAATGTTGACATTATTTTCACGGGTNCAATAAGTTGGATTGGNGCTGTTAAGAGGCCGCGCTTCNAAAGAAGCATGGTCCAGAGGTAAGTTATTAGGATTTAACTTGGCTAAGTAAGGATNAAGTTTT]
[+] EMBL OSS1765A [ACAAGACAAGGTAGCAACAACAATGGCGAGACATGGCCCTCAAAGCCATGACCAACCACTCCAAGAAGAGGACTACATAGACATGGACCTGAGCTCACCTGCAGCGGCAGAGGCGGTGACTGCCAGTGCCAGAGCAAGCTTGCTCTGCTACAGCACAGCCATGGCAGCCTCCCCACAAAACTCAAGGGAGTTCGAGTTCCACATGTCGGCTCCGGTTGACAAGTGGGAGCCCGCGGCATCACCAGCCGATGAGCTCTTCTACAAGGGCAAGCTACTGCCGCTCCACCTTCCACCACGNATCCAGATGGTCGAGAAGCTTCTCGAGAGTTCAGTTGAGAAGGGNCTTCTCTTCGCGAGCACTTGCCCAGCAACGGCATACCAGTCGTGCAATGATNACCGGCAATTCATGTTATGTCAGTGGGGGCTNAATGTTGACATTATTTTCACGGGTNCAATAAGTTGGATTGGNGCTGTTAAGAGGCCGCGCTTCNAAAGAAGCATGGTCCAGAGGTAAGTTATTAGGATTTAACTTGGCTAAGTAAGGATNAAGTTTT]
consensusID : consensus_7700#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 239 fasta sequence
[NGGCCTTCGGNTTGGAGGAACAGGAGGTGCAAAGGCGGATTGGCCAGGGTTACCCGGTTTTCAATGTTCATTCATCAGCGTCAAGGATAGCTGCAGAGTCTGAAGATCCAGATGATATAATTGAGATTTGCGGACGATGAAGTCGTTTATGTACAAATTTAAACACTTTTGCTAATTCTGTACACTTTTGATCTTCAGATACCTGCAGACATGATCTTATAATGTCCTTCAGAAAAAAA]
[+] EMBL AU161624 [NGGCCTTCGGNTTGGAGGAACAGGAGGTGCAAAGGCGGATTGGCCAGGGTTACCCGGTTTTCAATGTTCATTCATCAGCGTCAAGGATAGCTGCAGAGTCTGAAGATCCAGATGATATAATTGAGATTTGCGGACGATGAAGTCGTTTATGTACAAATTTAAACACTTTTGCTAATTCTGTACACTTTTGATCTTCAGATACCTGCAGACATGATCTTATAATGTCCTTCAGAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7700#0 ACCACTATCTCTGCCAAAACCAAACCAGAAACACACACCAAACACACAAGACAAGGTAGC 60
consensus_7700#1 ---------------------------------------------ACAAGACAAGGTAGC 15
consensus_7700#2 ------------------------------------------------------------
consensus_7700#0 AACAACAATGGCGAGACATGGCCCTCAAAGCCATGACCAACCACTCCAAGAAGAGGACTA 120
consensus_7700#1 AACAACAATGGCGAGACATGGCCCTCAAAGCCATGACCAACCACTCCAAGAAGAGGACTA 75
consensus_7700#2 ------------------------------------------------------------
consensus_7700#0 CATAGACATGGACCTGAGCTCACCTGCAGCGGCAGAGGCGGTGACTGCCAGTGCCAGAGC 180
consensus_7700#1 CATAGACATGGACCTGAGCTCACCTGCAGCGGCAGAGGCGGTGACTGCCAGTGCCAGAGC 135
consensus_7700#2 --------NGGCCTTCGGNTTGGAGG-AACAGGAGGTGCAAAGGCGGATTG-GCCAGGGT 50
** * * * * * * * * ** ** * * * * ***** *
consensus_7700#0 AAGCTTGCTCTGCTACAGCACAGCCATGGCAGCCTCCCCACAAAACTCAAGGGAGTTCGA 240
consensus_7700#1 AAGCTTGCTCTGCTACAGCACAGCCATGGCAGCCTCCCCACAAAACTCAAGGGAGTTCGA 195
consensus_7700#2 TACCCGGTTTT--CAATGTTCATTCAT--CAGCGTC--AAGGATAGCTGCAGAGTCTGAA 104
* * * * * * * ** *** **** ** * * * * * *
consensus_7700#0 GTTCCACATGTCGGCTCCGGTTGACAAGTGGGAGCCCGCGGCATCACCAGCCGATGAGCT 300
consensus_7700#1 GTTCCACATGTCGGCTCCGGTTGACAAGTGGGAGCCCGCGGCATCACCAGCCGATGAGCT 255
consensus_7700#2 GATCCAGATGA----TATAATTGA-GATTTGCGGACGATGAAGTC----GTTTATGTACA 155
* **** *** * **** * * * * * * ** * *** *
consensus_7700#0 CTTCTACAAGGGCAAGCTACTGCCGCTCCACCTTCCACCACGCATCCAGATGGTCGAGAA 360
consensus_7700#1 CTTCTACAAGGGCAAGCTACTGCCGCTCCACCTTCCACCACGNATCCAGATGGTCGAGAA 315
consensus_7700#2 AATTTAAACACTTTTGCTAATTCTGTACACTTTTGATCTTCAGATACCTGCAGACATGA- 214
* ** * **** * * * * ** * * ** * * * **
consensus_7700#0 GCTCCTCGAGAGTGCAGCTGAGAAGGGCCTCCTCTCCGCGAGCACTGCCCCAGCAACGCC 420
consensus_7700#1 GCTTCTCGAGAGTTCAGTTGAGAAGGGNCTTCTCTTCGCGAGCACTTGCCCAGCAACGGC 375
consensus_7700#2 ---TCTTATAATGTCCTTCAGAAAAAAA-------------------------------- 239
** * * **
consensus_7700#0 ATACCAGTCGTGCAATGCATCACCGGCAAATTCATGTTATGTCAGTGGAGAGCTCAATGC 480
consensus_7700#1 ATACCAGTCGTGCAATG-ATNACCGGCAA-TTCATGTTATGTCAGTGGGG-GCTNAATGT 432
consensus_7700#2 ------------------------------------------------------------
consensus_7700#0 TGAGCATTACTTCCACGAGTGCACATCAGCTGGTATTGGTGCTGCTGAGGAGGCCGCCGC 540
consensus_7700#1 TGA-CATTATTTTCACGGGTNCA-ATAAGTTGG-ATTGGNGCTGTTAAG-AGGCCGC-GC 487
consensus_7700#2 ------------------------------------------------------------
consensus_7700#0 CTGCGAAAAGAAGCCATGGTCCAAGAAGCTCAAGTTCATCAGGCATCTCAACCTTGGCCT 600
consensus_7700#1 TTC--NAAAGAAGC-ATGGTCCAGAGG---TAAGTT-ATTAGG-ATTTAA--CTTGGCT- 536
consensus_7700#2 ------------------------------------------------------------
consensus_7700#0 CAAGCTCAAGGCATCAAAAGCTTATATCAAGACAATATTTGCCACTAAAGCAGGCAATCC 660
consensus_7700#1 -AAGT---AAGGATNAAGTTTT-------------------------------------- 554
consensus_7700#2 ------------------------------------------------------------
consensus_7700#0 AGATGGCAAGACTGGTACACCTAGTGCAAATGAGCTCTCCAATGCGCAGTTCAAGTCTTG 720
consensus_7700#1 ------------------------------------------------------------
consensus_7700#2 ------------------------------------------------------------
consensus_7700#0 GAGGAAGAACCCATTTGGCCAGATCAGAAGCAACAGGTACATAGCCTCGCCTATCAGCAA 780
consensus_7700#1 ------------------------------------------------------------
consensus_7700#2 ------------------------------------------------------------
consensus_7700#0 CAGTGTCACACTTGGAGGGAGGCTTAAAGAAGATGAGTGCGGCCACAGGAGGTCCTTCTC 840
consensus_7700#1 ------------------------------------------------------------
consensus_7700#2 ------------------------------------------------------------
consensus_7700#0 CAGCGTCATTATTCGATACTCATCATCAAACAAGACATCCTCAGCGTCATCATCGTCATG 900
consensus_7700#1 ------------------------------------------------------------
consensus_7700#2 ------------------------------------------------------------
consensus_7700#0 CTCTTCATCAAATTCATCCTCCTCCATACTAAGCTCCACTGACTCTGGTGTGGGGCCAGT 960
consensus_7700#1 ------------------------------------------------------------
consensus_7700#2 ------------------------------------------------------------
consensus_7700#0 GCTCAGGAGGAGCAGCAGTGCAAGCTCAGAGATGGACAATCCAATCCAGGGAGCAATAGC 1020
consensus_7700#1 ------------------------------------------------------------
consensus_7700#2 ------------------------------------------------------------
consensus_7700#0 ATACTGCAAAAGGTCACAGCAACTGGCCTCGGTGAGAAAGAGTGCAAGCGATGCAGGTTT 1080
consensus_7700#1 ------------------------------------------------------------
consensus_7700#2 ------------------------------------------------------------
consensus_7700#0 CCGTTTCATGTCATCATCAGCGTCAAGGATAGCTGCAGAGTCTGAAGATCCAGATGATAT 1140
consensus_7700#1 ------------------------------------------------------------
consensus_7700#2 ------------------------------------------------------------
consensus_7700#0 AATTGAGATTTGTGGACGATGAAGTGTTTATGTACAAATTTAAACACTTTTGCTAATTCT 1200
consensus_7700#1 ------------------------------------------------------------
consensus_7700#2 ------------------------------------------------------------
consensus_7700#0 GTACACTTTTGATCTTCAGATACCTGCAGACATGATCTTATAATGTCCTTCAGAAAAATT 1260
consensus_7700#1 ------------------------------------------------------------
consensus_7700#2 ------------------------------------------------------------
consensus_7700#0 CAAGTAGCTTGTGTAATTTGTGTAAGAACAAATAGTTTCAAATTTCTAATTCTAATCTTT 1320
consensus_7700#1 ------------------------------------------------------------
consensus_7700#2 ------------------------------------------------------------
consensus_7700#0 AACACCAAATAGTGTAAGCACTTGGAATGACTGTCTAATACCAGAGTGCAG 1371
consensus_7700#1 ---------------------------------------------------
consensus_7700#2 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||