These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7703#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 826 fasta sequence [AATAAGATCTCAGCGGAGGAGGAGACGAGGGGGAGGGAGACCCAGCGAGGGAGGAGAGGAGGATTCCGAGCGCTGCAGCCAGCCATGGCGAAGCAAGGGGTGAAGAAGACGAGGGACGCGAACAAGAAGCGGATGGACCTCATCCTGCGCCTAATCCTCGCGGCCAACGTTATTTACATAGTAGTGAGAATGGCTGTAATGCATTCGTCTTTCACCTGGAAGCATTGGATTGGTCTTGCTGTGACATCTGCTGCATATTTTCTGCCGTACAAGCAACTTGCCAATATGTCAGAGCCAGAATACTCTGAGAATGGAGAGTTAATTAATGCTGGTTATGACTTGNACGCTGGTGGAATGTCCGAATATTTACAAGATGTGATATATTATCACTCTCTTTGTGCAGCTGATGTCTATTTTTTCTGATAAATTTTGGTGGACATATTTGGTGATTCCAGCTTATGGTGGATACAAGATTTCCGGTCTGTTGAGAGGAGCATTTTTCGGTGGTAGTTCAGAGGGCGAAGAAGAGGATGAGAAGACCCGAAAGAAAAGGGAGAAGATGGAGAAGAAGGCATCTAGGGGGAAGATTATCAAAACCAGGACTCGTTGATGGCACATGTAGTGTATCGGGGCTCGTTGATGGCTCATGTGTATTATTGTTTGAAGGGTAGGTTTGCTTTACATGGCTGTCCAACTGAAATGTAAGCTGTCGGGCAGAATTGTTTCATGAATTATTCGATCATTTGCCCCAGCAGCTTAGTAGTAGCACAAATTTGAACTAATCCTCTTAACTTATCGATACCAGCATTATCAATGAGCAGCTCTC] [+] EMBL C73629 [AATAAGATCTCAGCGGAGGAGGAGACGAGGGGGAGGGAGACCCAGCGAGGGAGGAGAGGAGGATTCCGAGCGCTGCAGCCAGCCATGGCGAA CAAGGGGTGAAGAAGACGAGGGACGCGAACAAGAAGCGGATGGACCTCATCCTGCGCCTAATCCTCGCGGCCAACGTTATTTACATAGTAGTGAGAATGGCTGTAATGCATTCGTCTTTCACCTGGAAGCATTGGATTGGTCTTGCTGTGACATCTGCTGCATATTTTCTGCCGTACAAGCAACTTGCCAATATGTCAGAGCCAGAATACTCTGAGAATGGAGAGTTAATTAATGCTGGTTATGACTTGNACGCTGGTGGAATGTCCGAATATTTACAAGATGTGATATATTAT ] [+] EMBL AK101444 [ CAGCGAGGGAGGAGAGGAGGATTCCGAGCGCTGCAGCCAGCCATGGCGAAGCAAGGGGTGAAGAAGACGAGGGACGCGAACAAGAAGCGGATGGACCTCATCCTGCGCCTAATCCTCGCGGCCAACGTTATTTACATAGTAGTGAGAATGGCTGTAATGCATTCGTCTTTCACCTGGAAGCATTGGATTGGTCTTGCTGTGACATCTGCTGCATATTTTCTGCCGTACAAGCAACTTGCCAATATGTCAGAGCCAGAATACTCTGAGAATGGAGAGTTAATTAATGCTGGTTATGACTTGAACGCTGGTGGAATGTCCGAATATTTACAAGATGTGATATA TATCACTCTCTTTGTGCAGCTGATGTCTATTTTTTCTGATAAATTTTGGTGGACATATTTGGTGATTCCAGCTTATGGTGGATACAAGATTTCCGGTCTGTTGAGAGGAGCATTTTTCGGTGGTAGTTCAGAGGGCGAAGAAGAGGATGAGAAGACCCGAAAGAAAAGGGAGAAGATGGAGAAGAAGGCATCTAGGGGGAAGATTATCAAAACCAGGACTCGTTGATGGCACATGTAGTGTATCGGGGCTCGTTGATGGCTCATGTGTATTATTGTTTGAAGGGTAGGTTTGCTTTACATGGCTGTCCAACTGAAATGTAAGCTGTCGGGCAGAATTGTTTCATGAATTATTCGATCATTTGCCCCAGCAGCTTAGTAGTAGCACAAATTTGAACTAATCCTCTTAACTTATCGATACCAGCATTATCAATGAGCAGCTCT ] [+] EMBL CB000089 [ TGCAGCCAGCCATGGCGAAGCAAGGGGTGAAGAAGACGAGGGACGCGAACAAGAAGCGGATGGACCTCATCCTGCGCCTAATCCTCGCGGCCAACGTGAGGGGCATAGTAGTGAGAATGGCTGTAATGCATTCGTCTTTCACCTGGAAGCATTGGATTGGTCTTGCTGTGACAGCTGCTGCATATTTTCTGCCGTACAAGCAAGTTGCCAATATGGCAGAGCCAGAATACgcg ] [-] EMBL CB966475 [ CCGTAAGAAAAGGGAGAAGATGGAGAAGAAGGCATCTAGGGGGAAGATTATCCAAACCAGGACTCGTTGATGGCACATGTAGTGTATCGGGGCTCGTTGATGGCTCATGTGTATTATTGTTTGAAGGGTAGGTTTGCTTTACATGGCTGTCCCACTGAAATGTAAGCTGTCGGGCAGAATTGTTTCATGAATTATTCGATCATTTGCCCCCCCCGCTTAGTAGTAGCACCAATTTGAACTAATCCTCTTAACTTATCGATACCCGCCTTATCCATGAGCAGCTCTC] consensusID : consensus_7703#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [GAGCGCTGCAGCCAGCCATGNNNANAANNGGGTGAAGAAGACGAGGGACGCGAACAAGAAGCGGATGGACCTCATCCTGCGCCTAATCCTCGCGGCCAACGTTATTTACATAGTAGTGAGAATGGCTGTAATGCATTCGTCTTTCACCTGGAAGCATTGGATTGGTCTTGCTGTGACATCTGCTGCATATTTTCTGCCGTACAAGCAACTTGCCAATATGTCAGAGCCAGAATACTCTGAGAATGGAGAGTTAATTAATGCTGGTTATGACTTGAACGCTGGTGGAATGTCCGAGTAAGGAAAACACAATTGTTTTTAATTATTCTACTTGAAAATGAATTATTGGATATTTTCCATGGGAAAATT] [+] EMBL OSS14391A [GAGCGCTGCAGCCAGCCATGNNNANAANNGGGTGAAGAAGACGAGGGACGCGAACAAGAAGCGGATGGACCTCATCCTGCGCCTAATCCTCGCGGCCAACGTTATTTACATAGTAGTGAGAATGGCTGTAATGCATTCGTCTTTCACCTGGAAGCATTGGATTGGTCTTGCTGTGACATCTGCTGCATATTTTCTGCCGTACAAGCAACTTGCCAATATGTCAGAGCCAGAATACTCTGAGAATGGAGAGTTAATTAATGCTGGTTATGACTTGAACGCTGGTGGAATGTCCGAGTAAGGAAAACACAATTGTTTTTAATTATTCTACTTGAAAATGAATTATTGGATATTTTCCATGGGAAAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7703#0 AATAAGATCTCAGCGGAGGAGGAGACGAGGGGGAGGGAGACCCAGCGAGGGAGGAGAGGA 60 consensus_7703#1 ------------------------------------------------------------ consensus_7703#0 GGATTCCGAGCGCTGCAGCCAGCCATGGCGAAGCAAGGGGTGAAGAAGACGAGGGACGCG 120 consensus_7703#1 -------GAGCGCTGCAGCCAGCCATGNNNANA-ANNGGGTGAAGAAGACGAGGGACGCG 52 ******************** * * *********************** consensus_7703#0 AACAAGAAGCGGATGGACCTCATCCTGCGCCTAATCCTCGCGGCCAACGTTATTTACATA 180 consensus_7703#1 AACAAGAAGCGGATGGACCTCATCCTGCGCCTAATCCTCGCGGCCAACGTTATTTACATA 112 ************************************************************ consensus_7703#0 GTAGTGAGAATGGCTGTAATGCATTCGTCTTTCACCTGGAAGCATTGGATTGGTCTTGCT 240 consensus_7703#1 GTAGTGAGAATGGCTGTAATGCATTCGTCTTTCACCTGGAAGCATTGGATTGGTCTTGCT 172 ************************************************************ consensus_7703#0 GTGACATCTGCTGCATATTTTCTGCCGTACAAGCAACTTGCCAATATGTCAGAGCCAGAA 300 consensus_7703#1 GTGACATCTGCTGCATATTTTCTGCCGTACAAGCAACTTGCCAATATGTCAGAGCCAGAA 232 ************************************************************ consensus_7703#0 TACTCTGAGAATGGAGAGTTAATTAATGCTGGTTATGACTTGNACGCTGGTGGAATGTCC 360 consensus_7703#1 TACTCTGAGAATGGAGAGTTAATTAATGCTGGTTATGACTTGAACGCTGGTGGAATGTCC 292 ****************************************** ***************** consensus_7703#0 GAATATTTACAAGATG-TGATATATTATCACTCTCTTTGTGCA---GCTGATGTCTATTT 416 consensus_7703#1 GAGTAAGGAAAACACAATTGTTTTTAATTATTCTACTTGAAAATGAATTATTGGATATTT 352 ** ** * ** * * * * * ** * *** *** * * ** ***** consensus_7703#0 TTTCTGATAAATTTTGGTGGACATATTTGGTGATTCCAGCTTATGGTGGATACAAGATTT 476 consensus_7703#1 TCCATGGGAAAATT---------------------------------------------- 366 * ** *** ** consensus_7703#0 CCGGTCTGTTGAGAGGAGCATTTTTCGGTGGTAGTTCAGAGGGCGAAGAAGAGGATGAGA 536 consensus_7703#1 ------------------------------------------------------------ consensus_7703#0 AGACCCGAAAGAAAAGGGAGAAGATGGAGAAGAAGGCATCTAGGGGGAAGATTATCAAAA 596 consensus_7703#1 ------------------------------------------------------------ consensus_7703#0 CCAGGACTCGTTGATGGCACATGTAGTGTATCGGGGCTCGTTGATGGCTCATGTGTATTA 656 consensus_7703#1 ------------------------------------------------------------ consensus_7703#0 TTGTTTGAAGGGTAGGTTTGCTTTACATGGCTGTCCAACTGAAATGTAAGCTGTCGGGCA 716 consensus_7703#1 ------------------------------------------------------------ consensus_7703#0 GAATTGTTTCATGAATTATTCGATCATTTGCCCCAGCAGCTTAGTAGTAGCACAAATTTG 776 consensus_7703#1 ------------------------------------------------------------ consensus_7703#0 AACTAATCCTCTTAACTTATCGATACCAGCATTATCAATGAGCAGCTCTC 826 consensus_7703#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||