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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7708#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2070 fasta sequence
[CAAGCAACACAGAGTGAAAAAAAATGGCACGGGTTCCCGTCTCTCGCCACCTTCGCGTCGCGCTGCTTGCTCTCCTCGTGGTCGCCGTCGCCGCCGCGGCGGCGGCGCGCGGGGATCAGCCGCGTCGCGGGCATAGCATGGCCGCGCGGCACGAGCGGTGGATGGCTAGGTTCGGGCGCGCGTACGCGGACGCCGCCGAGAAGGCGCGGCGGATGGAGGTGTTCGCGGCCAACGCGGAGCGCGTCGACGCCGCCAACCGCGCGGGCGGCGACCGCACCTACACGCTCGGCCTCAACCAGTTCTCCGACCTCACCGACGACGAGTTCGCGCAGACGCACCTCGGGTACAGCTGGGCGCCGCCGCCGCCGTCGCACCGGCATGGCCACCGCGCCGAGAATGGCACCGCCGCGGCGGCGGCGGATGACACGGACGTGCCGGACAGCGTCGACTGGAGGGCTCGCGGCGCCGTCACCGAGGTCAAGAACCAACGCAGCTGCGGGAGTTGCTGGGCGTTCGCGGCGGTGGCGGCGACGGAGGGGCTCGTCCAGCTCGCCACGGGCAACCTCGTGTCGCTCTCGGAGCAGCAGGTGCTCGACTGCACCGGCGGCGCCAACACCTGCAGCGGCGGCGACGTGTCCGCGGCGCTCCGCTACATCGCCGCGAGCGGCGGGCTGCAGACGGAGGCGGCCTACGCGTACGGCGGGCAGCAGGGCGCGTGCCGCGCCGGCGGGTTCGCCGCGCCGAACTCGGCGGCAGCCGTCGGCGGCGCCCGGTGGGCGCGCCTGTACGGCGACGAGGGCGCGCTGCAGGCGCTCGCCGCCGGGCAGCCGGTGGTCGTGGTCGTGGAGGCCTCCGAGCCGGACTTCCGGCACTACAGGAGCGGGGTCTACGCCGGGAGCGCCGCGTGCGGGCGGCGGCTCAACCACGCCGTCACGGTGGTGGGCTACGGCGCGGCGGCGGACGGCGGCGGGGAGTACTGGCTGGTGAAGAACCAGTGGGGGACGTGGTGGGGCGAGGGCGGCTACATGCGCGTCGCGCGCGGCGGCGCCGCCGGCGGCAACTGCGGCATCGCCACCTACGCCTTCTACCCGACCATGGACAGCTAGCTCAACTGAGCACTGGACAGTGAACACTAGACTGATGCAAATATGTACTAATATTGATAAGAATGTTACGCCTAATGCAAATATGTAATATGTGTGGGCGTCTGGCTTCTAAGTGATAAGCTATTAAGCCATAGTTAAGGAGTATATAGTAGATAAAATGATTATGAAACCAGAACTGTATCGACATATGCAGTTAAAGAAACTGATGTCGGTAATGGATGGAGCAAATAAGCACTTGTACACATTAAGAAAAGATGATTCAGAAAATTCAGGACATGCTTATTGCGCACAACATTTTTCTGTCTTTTTACTGTTCCAACGAAGAGGAACTATTCATCGAGATAATATTAGTAACCAACATAAACTGCTGCGTTCACTATATAGCAATCATCGTTTTTATCTCCCATTGCTTCTA-GCATACGCCACTTGAACAGATCATCCCACCGTCCACAACC-TCAAAGCTGATAATTTT-ACCATAGGGGAAGACGGCCTTGACTCTCTCAACGTCC-AGCAAGTGCTGCGTTGGCCTCGGCACCCCGAGCTTGATCTGCAGCTTCATCTGCTCCGTGTTCA-CCCCAGGAATGGATCCGCTGCGGAAGGCCGGGATGGAGTTGGAGGTGATGGCGTCCCTGCAGGCGCGCACGGCGGCGGCGGTGACGTCCTGCCCGTGCTGGTCGTACCCGACGCCCATCTCCACGAACAGCAGCCTCATGGCCTCCTGCTGCCCCTCCCCGCCACCGCACGCCTGGGTCTGCGCCGCCTCCATCTCCATGGGAGACGACGAGGAGGCGACCGCTCTCGCTACTCCTGCGGCGGGCGGCGCCGGGTTCTCCGGCCTAAGGGATCTGATCCGGCAGCGAGGCGGCCGGCGGCAGGAGGAGGTGGAGGGGAGCAGCGGTGGTGTTGGTTTGGTCGGGCGGGGGAGGAGGAGGAGGCAGCTGGGGGATGATGCTGCTGACATCAT]
[+] EMBL AK070448 [CAAGCAACACAGAGTGAAAAAAAATGGCACGGGTTCCCGTCTCTCGCCACCTTCGCGTCGCGCTGCTTGCTCTCCTCGTGGTCGCCGTCGCCGCCGCGGCGGCGGCGCGCGGGGATCAGCCGCGTCGCGGGCATAGCATGGCCGCGCGGCACGAGCGGTGGATGGCTAGGTTCGGGCGCGCGTACGCGGACGCCGCCGAGAAGGCGCGGCGGATGGAGGTGTTCGCGGCCAACGCGGAGCGCGTCGACGCCGCCAACCGCGCGGGCGGCGACCGCACCTACACGCTCGGCCTCAACCAGTTCTCCGACCTCACCGACGACGAGTTCGCGCAGACGCACCTCGGGTACAGCTGGGCGCCGCCGCCGCCGTCGCACCGGCATGGCCACCGCGCCGAGAATGGCACCGCCGCGGCGGCGGCGGATGACACGGACGTGCCGGACAGCGTCGACTGGAGGGCTCGCGGCGCCGTCACCGAGGTCAAGAACCAACGCAGCTGCGGGAGTTGCTGGGCGTTCGCGGCGGTGGCGGCGACGGAGGGGCTCGTCCAGCTCGCCACGGGCAACCTCGTGTCGCTCTCGGAGCAGCAGGTGCTCGACTGCACCGGCGGCGCCAACACCTGCAGCGGCGGCGACGTGTCCGCGGCGCTCCGCTACATCGCCGCGAGCGGCGGGCTGCAGACGGAGGCGGCCTACGCGTACGGCGGGCAGCAGGGCGCGTGCCGCGCCGGCGGGTTCGCCGCGCCGAACTCGGCGGCAGCCGTCGGCGGCGCCCGGTGGGCGCGCCTGTACGGCGACGAGGGCGCGCTGCAGGCGCTCGCCGCCGGGCAGCCGGTGGTCGTGGTCGTGGAGGCCTCCGAGCCGGACTTCCGGCACTACAGGAGCGGGGTCTACGCCGGGAGCGCCGCGTGCGGGCGGCGGCTCAACCACGCCGTCACGGTGGTGGGCTACGGCGCGGCGGCGGACGGCGGCGGGGAGTACTGGCTGGTGAAGAACCAGTGGGGGACGTGGTGGGGCGAGGGCGGCTACATGCGCGTCGCGCGCGGCGGCGCCGCCGGCGGCAACTGCGGCATCGCCACCTACGCCTTCTACCCGACCATGGACAGCTAGCTCAACTGAGCACTGGACAGTGAACACTAGACTGATGCAAATATGTACTAATATTGATAAGAATGTTACGCCTAATGCAAATATGTAATATGTGTGGGCGTCTGGCTTCTAAGTGATAAGCTATTAAGCCATAGTTAAGGAGTATATAGTAGATAAAATGATTATGAAACCAGAACTGTATCGACATATGCAGTTAAAGAAACTGATGTCGGTAATGGATGGAGCAAATAAGCACTTGTACACATTAAGAAAAGATGATTCAGAAAATTCAGGACATG ]
[-] EMBL AU197223 [ TTTTTAAACCAGAACTGTATCGACATATGCAGTTAAAGAAACTGATGTCGGTAATGGATGGAGCAAATAAGCACTTGTACACATTAAGAAAAGATGATTCAGAAAATTCAGGACATGCTTATTGCGCACAACATTTTTCTGTCTTTTTACTGTTCCAACGAAGAGGAACTATTCATCGAGATAATATTAGTAACCAACATAAACTGCTGCGTTCACTATATAGCAATCATCGTTTTTATCTCCCATTGCTTCTA GCATACGCCACTTGAACAGATCATCCCACCGTCCACAACC TCAAAGCTGATAATTTT ACCATAGGGGAAG ]
[-] EMBL AK062537 [ AGCACTTGTACACATTAAGAAAAGATGATTCAGAAAATTCAGGACATGCTTATTGCGCACAACATTTTTCTGTCTTTTTACTGTTCCAACGAAGAGGAACTATTCATCGAGATAATATTAGTAACCAACATAAACTGCTGCGTTCACTATATAGCAATCATCGTTTTTATCTCCCATTGCTTCTAGGCATACGCCACTTGAACAGATCATCCCACCGTCCACAACC TCAAAGCTGATAATTTT ACCATAGGGGAAGACGGCCTTGACTCTCTCAACGTCC AGCAAGTGCTGCGTTGGCCTCGGCACCCCGAGCTTGATCTGCAGCTTCATCTGCTCCGTGTTCA CCCCAGGAATGGATCCGCTGCGGAAGGCCGGGATGGAGTTGGAGGTGATGGCGTCCCTGCAGGCGCGCACGGCGGCGGCGGTGACGTCCTGCCCGTGCTGGTCGTACCCGACGCCCATCTCCACGAACAGCAGCCTCATGGCCTCCTGCTGCCCCTCCCCGCCACCGCACGCCTGGGTCTGCGCCGCCTCCATCTCCATGGGAGACGACGAGGAGGCGACCGCTCTCGCTACTCCTGCGGCGGGCGGCGCCGGGTTCTCCGGCCTAAGGGATCTGATCCGGCAGCGAGGCGGCCGGCGGCAGGAGGAGGTGGAGGGGAGCAGCGGTGGTGTTGGTTTGGTCGGGCGGGGGAGGAGGAGGAGGCAGCTGGGGGATGATGCTGCTGACATCAT]
[-] EMBL AU066027 [ anATAACCCAACCGTCAAAAACCTTAAAAACTGATAATTTTNACCATA GGGAAAACGGCCTTTAATCTCTNAACGTCCAAGAAAGTGCTNCGTTGGCCTCGGCACCCCGAGCTTGATCTGCAACTTCATCTGCTCCGTGTTCACCCCCAGGAATGGATCCGCTGCGGAAGGCCGGNATGGAGTTGGAGGTGATGGCGTCCCTGCAGGCGCGCACGGCGGCGGCGGTGACGTCCTGCCCGTGCTGGTCGTACCCGACGCCCATCTCCACGAACAGCAGCCTCATGGCCTCCTGCTGCCCCTCCCCGCCACCGCACGCCTGGGTCTGCGCCGCCTCCATCTCCATGGGAGACGACGAGGAGGCGANCGCTCTCGCTACTCCTGCGGCGGGCGGCGCCGGGTTCTCCGGCCTAAGGGATNTGATCCGGCAGCGAGGCGGCCGGCGGCAGGAGGAGGTGGAGGGGAGCAGCGGTGGTGTTGGTTTGGTCGGGCGGGGGAGGAGGAGGAGGCAGCTGGGGGATG ]
consensusID : consensus_7708#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence
[CGACCGCGGCTCCAGACGGAGCGGCACTACGCGTACGCGGGCAGCAGGGCGCAGTGCCGCAGCCGGCGGGTTCACCGCAGCCGAACTCGGCAGGCAACCAGTCGCAGGCAGCCCAGGTGGGCGCGCCTGTACGGCGACGAGGGCGCGCTGCAGGCAGCTCCCACCAGGCAGCCGGTGTCGTGTCGTGGAGGCCTCCGAGCCAGGACTTCCGGCACTACAGGAGCGGGTTCTACGCCGGGAGCCCGCAGTGCGGCGCAGGCTCAACCACCCCGTCACGTGGTGGGCTACGGCGCGCGGCGGACGGCGGCGGGGAGTACTGGCTGGTGAAGAACCAGTGGGGGACAGTGGTGGGGCGAGGCGCAGGCATACATGCAGCAGTCGCAGCAGCGGCAGGCAGCCAGCACAGGCAGGCAACTGCAGGCATCGCCAACACTACGCCTTCTACCCGACCATGGACAGCTAGCTCAACTGAGCACTGGACAGTGAACACTAGACTGATGCAAATATGTACTAATATTGATAAGAATGTTACGCCTAATGCAAATAAAAA]
[+] EMBL BI812921 [CGACCGCGGCTCCAGACGGAGCGGCACTACGCGTACGCGGGCAGCAGGGCGCAGTGCCGCAGCCGGCGGGTTCACCGCAGCCGAACTCGGCAGGCAACCAGTCGCAGGCAGCCCAGGTGGGCGCGCCTGTACGGCGACGAGGGCGCGCTGCAGGCAGCTCCCACCAGGCAGCCGGTGTCGTGTCGTGGAGGCCTCCGAGCCAGGACTTCCGGCACTACAGGAGCGGGTTCTACGCCGGGAGCCCGCAGTGCGGCGCAGGCTCAACCACCCCGTCACGTGGTGGGCTACGGCGCGCGGCGGACGGCGGCGGGGAGTACTGGCTGGTGAAGAACCAGTGGGGGACAGTGGTGGGGCGAGGCGCAGGCATACATGCAGCAGTCGCAGCAGCGGCAGGCAGCCAGCACAGGCAGGCAACTGCAGGCATCGCCAACACTACGCCTTCTACCCGACCATGGACAGCTAGCTCAACTGAGCACTGGACAGTGAACACTAGACTGATGCAAATATGTACTAATATTGATAAGAATGTTACGCCTAATGCAAATAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7708#0 CAAGCAACACAGAGTGAAAAAAAATGGCACGGGTTCCCGTCTCTCGCCACCTTCGCGTCG 60
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 CGCTGCTTGCTCTCCTCGTGGTCGCCGTCGCCGCCGCGGCGGCGGCGCGCGGGGATCAGC 120
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 CGCGTCGCGGGCATAGCATGGCCGCGCGGCACGAGCGGTGGATGGCTAGGTTCGGGCGCG 180
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 CGTACGCGGACGCCGCCGAGAAGGCGCGGCGGATGGAGGTGTTCGCGGCCAACGCGGAGC 240
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 GCGTCGACGCCGCCAACCGCGCGGGCGGCGACCGCACCTACACGCTCGGCCTCAACCAGT 300
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 TCTCCGACCTCACCGACGACGAGTTCGCGCAGACGCACCTCGGGTACAGCTGGGCGCCGC 360
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 CGCCGCCGTCGCACCGGCATGGCCACCGCGCCGAGAATGGCACCGCCGCGGCGGCGGCGG 420
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 ATGACACGGACGTGCCGGACAGCGTCGACTGGAGGGCTCGCGGCGCCGTCACCGAGGTCA 480
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 AGAACCAACGCAGCTGCGGGAGTTGCTGGGCGTTCGCGGCGGTGGCGGCGACGGAGGGGC 540
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 TCGTCCAGCTCGCCACGGGCAACCTCGTGTCGCTCTCGGAGCAGCAGGTGCTCGACTGCA 600
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 CCGGCGGCGCCAACACCTGCAGCGGCGGCGACGTGTCCGCGGCGCTCCGCTACATCGCCG 660
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 CGAGCGGCGGGCTGCAGACGGAGGCGGCCTACGCGTACGGCGGGCAGCAGGGCGC-GTGC 719
consensus_7708#1 CGACCG--CGGCTCCAGACGGAGCGGCACTACGCGTACG-CGGGCAGCAGGGCGCAGTGC 57
*** ** **** ********* * *********** *************** ****
consensus_7708#0 CGC-GCCGGCGGGTTCGCCGC-GCCGAACTCGGC-GGCAGCC-GTCGGCGGCGCCC--GG 773
consensus_7708#1 CGCAGCCGGCGGGTTCACCGCAGCCGAACTCGGCAGGCAACCAGTCGCAGGCAGCCCAGG 117
*** ************ **** ************ **** ** **** *** ** **
consensus_7708#0 TGGGCGCGCCTGTACGGCGACGAGGGCGCGCTGCAGGCGCTCGCCGCCGGGCAGCCGGTG 833
consensus_7708#1 TGGGCGCGCCTGTACGGCGACGAGGGCGCGCTGCAGGCAGCTCCCACCAGGCAGCCGGTG 177
************************************** ** ** ***********
consensus_7708#0 GTCGTGGTCGTGGAGGCCTCCGAGCC-GGACTTCCGGCACTACAGGAGCGGGGTCTACGC 892
consensus_7708#1 -TCGTG-TCGTGGAGGCCTCCGAGCCAGGACTTCCGGCACTACAGGAGCGGGTTCTACGC 235
***** ******************* ************************* *******
consensus_7708#0 CGGGAGCGCCGCGTGCGGGCGGCGGCTCAACCACGCCGTCACGGTGGTGGGCTACGGCGC 952
consensus_7708#1 CGGGAGCCCGCAGTGCGG-CGCAGGCTCAACCACCCCGTCACG-TGGTGGGCTACGGCGC 293
******* * ****** ** *********** ******** ****************
consensus_7708#0 GGCGGCGGACGGCGGCGGGGAGTACTGGCTGGTGAAGAACCAGTGGGGGAC-GTGGTGGG 1011
consensus_7708#1 G-CGGCGGACGGCGGCGGGGAGTACTGGCTGGTGAAGAACCAGTGGGGGACAGTGGTGGG 352
* ************************************************* ********
consensus_7708#0 GCGAGG-GCGGCTACATGCGCGTCGCGCGCGGCGGCGCC-----GCCGGC-------GGC 1058
consensus_7708#1 GCGAGGCGCAGGCATACATGCAGCAGTCGCAGCAGCGGCAGGCAGCCAGCACAGGCAGGC 412
****** ** * * * ** * *** ** *** * *** ** ***
consensus_7708#0 AACTGC-GGCATCGCCACC--TACGCCTTCTACCCGACCATGGACAGCTAGCTCAACTGA 1115
consensus_7708#1 AACTGCAGGCATCGCCAACACTACGCCTTCTACCCGACCATGGACAGCTAGCTCAACTGA 472
****** ********** * ***************************************
consensus_7708#0 GCACTGGACAGTGAACACTAGACTGATGCAAATATGTACTAATATTGATAAGAATGTTAC 1175
consensus_7708#1 GCACTGGACAGTGAACACTAGACTGATGCAAATATGTACTAATATTGATAAGAATGTTAC 532
************************************************************
consensus_7708#0 GCCTAATGCAAATATGTAATATGTGTGGGCGTCTGGCTTCTAAGTGATAAGCTATTAAGC 1235
consensus_7708#1 GCCTAATGCAAATAAAAA------------------------------------------ 550
************** *
consensus_7708#0 CATAGTTAAGGAGTATATAGTAGATAAAATGATTATGAAACCAGAACTGTATCGACATAT 1295
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 GCAGTTAAAGAAACTGATGTCGGTAATGGATGGAGCAAATAAGCACTTGTACACATTAAG 1355
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 AAAAGATGATTCAGAAAATTCAGGACATGCTTATTGCGCACAACATTTTTCTGTCTTTTT 1415
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 ACTGTTCCAACGAAGAGGAACTATTCATCGAGATAATATTAGTAACCAACATAAACTGCT 1475
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 GCGTTCACTATATAGCAATCATCGTTTTTATCTCCCATTGCTTCTAGCATACGCCACTTG 1535
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 AACAGATCATCCCACCGTCCACAACCTCAAAGCTGATAATTTTACCATAGGGGAAGACGG 1595
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 CCTTGACTCTCTCAACGTCCAGCAAGTGCTGCGTTGGCCTCGGCACCCCGAGCTTGATCT 1655
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 GCAGCTTCATCTGCTCCGTGTTCACCCCAGGAATGGATCCGCTGCGGAAGGCCGGGATGG 1715
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 AGTTGGAGGTGATGGCGTCCCTGCAGGCGCGCACGGCGGCGGCGGTGACGTCCTGCCCGT 1775
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 GCTGGTCGTACCCGACGCCCATCTCCACGAACAGCAGCCTCATGGCCTCCTGCTGCCCCT 1835
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 CCCCGCCACCGCACGCCTGGGTCTGCGCCGCCTCCATCTCCATGGGAGACGACGAGGAGG 1895
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 CGACCGCTCTCGCTACTCCTGCGGCGGGCGGCGCCGGGTTCTCCGGCCTAAGGGATCTGA 1955
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 TCCGGCAGCGAGGCGGCCGGCGGCAGGAGGAGGTGGAGGGGAGCAGCGGTGGTGTTGGTT 2015
consensus_7708#1 ------------------------------------------------------------
consensus_7708#0 TGGTCGGGCGGGGGAGGAGGAGGAGGCAGCTGGGGGATGATGCTGCTGACATCAT 2070
consensus_7708#1 -------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||