These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7711#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1438 fasta sequence [AAACAAACAGATCAACTTCCCACCACTGTAAGACAATCAAATACAAGTTCTACAAAATCTTTGTGATCTCCACCAAATTCAAAATACATATAGCCACTAGGTCGACAAAACTGTCTTGCTATTGTTTTTCTTCATGGAGTAACTCGATTGTGTTTTAAATGTTAACAGGGGGAACTGACCTCTGGTAGAATAAACAACTTAACAGAAATTCAGGTCAACTAGCTGTGTACTTTGAAGCACCGTAACAACGGGAACAGCTGAATCAGGTCATCCCGACTCCTCTTCTTAATACCAATACAGCCATTTACATCAAGAGTTGTGAGACTACGTGAGCAATGTTTTGACAAAGCCTCCAGGCAGACATCAGTTACACCAACTATTCCAAATAAACTAAGCAATTGAAGGGACCGGCATCCTTGTGCGATAGCTACCACCCCAACATCAGTAACACGTACACACCAGGACAAATTGAGATATGTCAGACATACACATCTTGATATACATGAAAGGCCATCATCAGTTACATTCTGGGCCCCACATAAGTCTAGAAATGTAAGGTTAGTTAAAGATCCTATCTTCTTATAAACCTTGTCGCTAAAACTTGACAGGGCATAAAGGTTCAAGCTTTCAAGAGAAGAACATTTCTGAAGCACTTCTTGAAGTCCATCGTCTGTCAACTTGATGCACCTGGTTATGTTCAACTTCTTTAGTCCTTCATAATTATCAGCAACTAGCTGCATACCTTTATCTGAGATATTCTTACAACCACTCAAGTTCAGGTCGACTATGTGCTTGCAGTTCTGCACAATGTGCCTAATGGTTAAGTCTGTCAGTCCAACAATCCAATAGATAGAAAGGGCCCGAAGGTTTGGACAAAGACTTGTAATAGTTTCAATCCCTTTGTCAGAAACTTTTTGGCATGCGTTTATGTTCAATAATTCCAACTCTTGCAGTGAGGTACATCCCATTTCTTTCAGGCGAACAAAATGCCGGTCATCAATATCTTGAGCAAATTCAAGGTTAATAATTTTGAGATGACAATATCTTGGCAGTGATATCGCTGAAATAAGTCGGTCACCAGCTTTGTTCATCTCATGCAGATCAAGCACCGACTACACGAGCTAAATCACCGGCCACTCCAGCGACGAAGCCCAGGCGAGGGACCACTTCCTCAGCAGCGCGAAACAACGAAGAAGCACGCCTCGAGAGTCGAGACCAAGAGCAAGCAGCGGGAGGACGAAGAAGGTAGAAGGGAGCGACGCGACGCGGTACCGCACCTCCCAGAGCTTGGGGTTGGCGACGAGGGCGCGGTGGCACCAGGGGCTGACGGCGAGCAGGGCGCAGGCGTCGCGCTGGGGGAGGCGCGGGCTCACCAGCTCCATCACCCGGGGCACCGTCTCCCGGCACCACGCCTCGTCGCCGGCCGCCGCCTCCGCCT] [+] EMBL CB664450 [AAACAAACAGATCAACTTCCCACCACTGTAAGACAATCAAATACAAGTTCTACAAAATCTTTGTGATCTCCACCAAATTCAAAATACATATAGCCACTAGGTCGACAAAACTGTCTTGCTATTGTTTTTCTTCATGGAGTAACTCGATTGTGTTTTAAATGTTAACAGGGGGAACTGACCTCTGGTAGAATAAACAACTTAACAGAAATTCAGGTCAACTAGCTGTGTACTTTGAAGCACCGTAACAACGGGAACAGCTGAATCAGGTCATCCCGACTCCTCTTCTTAATACCAATACAGCCATTTACATCAAGAGTTGTGAGACTACGTGAGCAATGTTTTGACAAAGCCTCCAGGCAGACATCAGTTACACCAACTATTCCAAATAAACTAAGCAATTGAAGGGACCGGCATCCTTGTGCGATAGCTACCACCCCAACATCAGTAACACGTACACACCAGGACAAATTGAGATATGTCAGACATACACATCTTGATATACATGAAAGGCCATCATCAGTTACATTCTGGGCCCCACATAAGTCTAGAAATGTAAGGTTAGTTAAAGATCCTATCTTCTTATAAACCTTGTCGCTAAAACTTGACAGGGCATAAAGGTTCAAGCTTTCAAGAGAAGAACATTTCTGAAGCACTTCTTGAAGTCCATCGTCTGTCAACTTGATGCACCTGGTTATGTTCAACTTCTTTAGTCCTTCATAATTATCAGCAACTAGCTGCATACCTTTATCTGAGATATTCTTACAACCACTCAAGTTCAGGTCGACTATGTGCTTGCAGTTCTGCACAATGTGCCTAATGGTTAAGTCTGTCAGTC ] [+] EMBL CB664490 [AAACAAACAGATCAACTTCCCACCACTGTAAGACAATCAAATACAAGTTCTACAAAATCTTTGTGATCTCCACCAAATTCAAAATACATATAGCCACTAGGTCGACAAAACTGTCTTGCTATTGTTTTTCTTCATGGAGTAACTCGATTGTGTTTTAAATGTTAACAGGGGGAACTGACCTCTGGTAGAATAAACAACTTAACAGAAATTCAGGTCAACTAGCTGTGTACTTTGAAGCACCGTAACAACGGGAACAGCTGAATCAGGTCATCCCGACTCCTCTTCTTAATACCAATACAGCCATTTACATCAAGAGTTGTGAGACTACGTGAGCAATGTTTTGACAAAGCCTCCAGGCAGACATCAGTTACACCAACTATTCCAAATAAACTAAGCAATTGAAGGGACCGGCATCCTTGTGCGATAGCTACCACCCCAACATCAGTAACACGTACACACCAGGACAAATTGAGATATGTCAGACATACACATCTTGATATACATGAAAGGCCATCATCAGTTACATTCTGGGCCCCACATAAGTCTAGAAATGTAAGGTTAGTTAAAGATCCTATCTTCTTATAAACCTTGTCGCTAAAACTTGACAGGGCATAAAGGTTCAAGCTTTCAAGAGAAGAACATTTCTGAAGCACTTCTTGAAGTCCATCGTCTGTCAACTTGATGCACCTGGTTATGTTCAACTTCTTTAGTCCTTCATAATTATCAGCAACTAGCTGCATACCTTTATCTGAGATATTCTTACAACCACTCAAGTTCAGGTCGACTATGTGCTTGCA ] [-] EMBL CB664489 [ AAGAGAAGAACATTTCTGAAGCACTTCTTGAAGTCCATCGTCTGTCAACTTGATGCACCTGGTTATGTTCAACTTCTTTAGTCCTTCATAATTATCAGCAACTAGCTGCATACCTTTATCTGAGATATTCTTACAACCACTCAAGTTCAGGTCGACTATGTGCTTGCAGTTCTGCACAATGTGCCTAATGGTTAAGTCTGTCAGTCCAACAATCCAATAGATAGAAAGGGCCCGAAGGTTTGGACAAAGACTTGTAATAGTTTCAATCCCTTTGTCAGAAACTTTTTGGCATGCGTTTATGTTCAATAATTCCAACTCTTGCAGTGAGGTACATCCCATTTCTTTCAGGCGAACAAAATGCCGGTCATCAATATCTTGAGCAAATTCAAGGTTAATAATTTTGAGATGACAATATCTTGGCAGTGATATCGCTGAAATAAGTCGGTCACCAGCTTTGTTCATCTCATGCAGATCAAGCACCGACTACACGAGCTAAATCACCGGCCACTCCAGCGACGAAGCCCAGGCGAGGGACCACTTCCTCAGCAGCGCGAAACAACGAAGAAGCACGCCTCGAGAGTCGAGACCAAGAGCAAGCAGCGGGAGGACGAAGAAGGTAGAAGGGAGCGACGCGACGCGGTACCGCACCTCCCAGAGCTTGGGGTTGGCGACGAGGGCGCGGTGGCACCAGGGGCTGACGGCGAGCAGGGCGCAGGCGTCGCGCTGGGGGAGGCGCGGGCTCACCAGCTCCATCACCCGGGGCACCGTCTCCCGGCACCACGCCTCGTCGCCGGCCGCCGCCTCCGCCT] [-] EMBL CB664449 [ TGTCAACTTGATGCACCTGGTTATGTTCAACTTCTNTAGTCCTTCATAATTATCAGCAACTAGCTGCATACCTTTATCTGAGATATTCTTACAACCACTCAAGTTCAGGTCGACTATGTGCTTGCAGTTCTGCACAATGTGCCTAATGGTTAAGTCTGTCAGTCCAACAATCCAATAGATAGAAAGGGCCCGAAGGTTTGGACAAAGACTTGTAATAGTTTCAATCCCTTTGTCAGAAACTTTTTGGCATGCGTTTATGTTCAATAATTCCAACTCTTGCAGTGAGGTACATCCCATTTCTTTCAGGCGAACAAAATGCCGGTCATCAATATCTTGAGCAAATTCAAGGTTAATAATTTTGAGATGACAATATCTTGGCAGTGATATCGCTGAAATAAGTCGGTCACCAGCTTTGTTCATCTCATGCAGATCAAGCACCGACTACACGAGCTAAATCACCGGCCACTCCAGCGACGAAGCCCAGGCGAGGGACCACTTCCTCAGCAGCGCGAAACAACGAAGAAGCACGCCTCGAGAGTCGAGACCAAGAGCAAGCAGCGGGAGGACGAAGAAGGTAGAAGGGAGCGACGCGACGCGGTACCGCACCTCCCAGAGCTTGGGGTTGGCGACGAGGGCGCGGTGGCACCAGGGGCTGACGGCGAGCAGGGCGCAGGCGTCGCGCTGGGGGAGGCGCGGGCTCACCAGCTCCATCACCCGGGGCACCGTCTCCCGGCACCACGCCTCGTCGCCGGCCGCCGCCTCCGCCT] consensusID : consensus_7711#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [GGTAATAATCTTGCTTTTTTTCCCGAACCATGAACAAATGCCTCCTCAATATTTAATGTAGGTGCTTGATCTGCATGAGATGAACAAAGCTGGTGACCGACTTATTTCAGCGATATCACTGGCAAGAATAATCCTATNGTTATTATTATATTTTTTTTAGTGATGAACTCATGAACTGATTATTTTATGCTTGATCTACCTTCTGAATGATAATTCATACTATTTGTGTGGTTGCTCATATTTCTGTACTATTTGATAAAACATCAACGTTTTCTAGTGCACACTGCACAGCAGCATCATACTGTAGTCTCAGTTTAAAATCTTTAAGTTGCTTTGGTGACATGTTTTGTCCCATTCTTCCACAGCCAAGATATTGTCATCTCAAAATTATTAACCTTGAATTTGCTCAAGATATTGATGACCGGTATTTTGTTCGCCTGAAAG] [+] EMBL CF305898 [GGTAATAATCTTGCTTTTTTTCCCGAACCATGAACAAATGCCTCCTCAATATTTAATGTAGGTGCTTGATCTGCATGAGATGAACAAAGCTGGTGACCGACTTATTTCAGCGATATCACTGGCAAGAATAATCCTATNGTTATTATTATATTTTTTTTAGTGATGAACTCATGAACTGATTATTTTATGCTTGATCTACCTTCTGAATGATAATTCATACTATTTGTGTGGTTGCTCATATTTCTGTACTATTTGATAAAACATCAACGTTTTCTAGTGCACACTGCACAGCAGCATCATACTGTAGTCTCAGTTTAAAATCTTTAAGTTGCTTTGGTGACATGTTTTGTCCCATTCTTCCACAGCCAAGATATTGTCATCTCAAAATTATTAACCTTGAATTTGCTCAAGATATTGATGACCGGTATTTTGTTCGCCTGAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7711#0 AAACAAACAGATCAACTTCCCACCACTGTAAGACAATCAAATACAAGTTCTACAAAATCT 60 consensus_7711#1 ------------------------------------------------------------ consensus_7711#0 TTGTGATCTCCACCAAATTCAAAATACATATAGCCACTAGGTCGACAAAACTGTCTTGCT 120 consensus_7711#1 ------------------------------------------------------------ consensus_7711#0 ATTGTTTTTCTTCATGGAGTAACTCGATTGTGTTTTAAATGTTAACAGGGGGAACTGACC 180 consensus_7711#1 ------------------------------------------------------------ consensus_7711#0 TCTGGTAGAATAAACAACTTAACAGAAATTCAGGTCAACTAGCTGTGTACTTTGAAGCAC 240 consensus_7711#1 ------------------------------------------------------------ consensus_7711#0 CGTAACAACGGGAACAGCTGAATCAGGTCATCCCGACTCCTCTTCTTAATACCAATACAG 300 consensus_7711#1 ------------------------------------------------------------ consensus_7711#0 CCATTTACATCAAGAGTTGTGAGACTACGTGAGCAATGTTTTGACAAAGCCTCCAGGCAG 360 consensus_7711#1 ------------------------------------------------------------ consensus_7711#0 ACATCAGTTACACCAACTATTCCAAATAAACTAAGCAATTGAAGGGACCGGCATCCTTGT 420 consensus_7711#1 ------------------------------------------------------------ consensus_7711#0 GCGATAGCTACCACCCCAACATCAGTAACACGTACACACCAGGACAAATTGAGATATGTC 480 consensus_7711#1 ------------------------------------------------------------ consensus_7711#0 AGACATACACATCTTGATATACATGAAAGGCCATCATCAGTTACATTCTGGGCCCCACAT 540 consensus_7711#1 ------------------------------------------------------------ consensus_7711#0 AAGTCTAGAAATGTAAGGTTAGTTAAAGATCCTATCTTCTTAT--AAACCTTGTCGCTAA 598 consensus_7711#1 ---------------------GGTAATAATCTTGCTTTTTTTCCCGAACCATGAACAAAT 39 * *** *** * ** ** **** ** * consensus_7711#0 AACTTGACAGGGCATAA---AGGTTCAAGCTTT-CAAGAGAAGAACATTTCTGAAGCACT 654 consensus_7711#1 GCCTCCTCAATATTTAATGTAGGTGCTTGATCTGCATGAGATGAACAAAGCTGGTGACCG 99 ** ** *** **** * * * * ** **** ***** *** * * consensus_7711#0 TCTTGAAGTCCATCGTCTGTCAACTTGATGCACCTGGTTATGTTCAACTTCTTTAGTCCT 714 consensus_7711#1 ACTT--ATTTCAGCGA-TATCA--CTGGCAAGAATAATCCTATNGTTATTATTATATTTT 154 *** * * ** ** * *** ** * * * * ** ** * * consensus_7711#0 TCATAATTATCAGCA-ACTAGCTGCATACCTT-TATCTGAGATATTCTTACAACCACTCA 772 consensus_7711#1 TTTTAGTGATGAACTCATGAACTGATTATTTTATGCTTGATCTACCTTCTGAATGAT--- 211 * ** * ** * * * * *** ** ** * *** ** * ** * consensus_7711#0 AGTTCAGGTCGACTATGTGCTTGC----AGTTCTGCACAATGTGCCTAATGGTTAA-GTC 827 consensus_7711#1 AATTCATACTATTTGTGTGGTTGCTCATATTTCTGTACTATTTGATAAAACATCAACGTT 271 * **** * **** **** * ***** ** ** ** ** * ** ** consensus_7711#0 TGTCAGTCCAACAATCCAATAGATAGAAAGGGCCCGAAGGTTTGGACAAAGACTTGTAAT 887 consensus_7711#1 TTCTAGTGCA-CACTGCA--CAGCAGCATCATACTGTAGTCTCAGTTTAAAATCTTTAA- 327 * *** ** ** * ** ** * * * ** * * ** * * *** consensus_7711#0 AGTTTCAATCCCTTTGTCAGAAACTTTTTGGCATGCGTTTATGTTCAATAATTCCAACTC 947 consensus_7711#1 ------GTTGCTTTGGTGACATGTTTTGTCCCATTCTTCCACAGCCAAGATATTGTCATC 381 * * ** ** * * *** * *** * * * *** * * ** consensus_7711#0 TTGCAGTGAGGTACATCCCATTTCTTTCAGGCGAACAAAATGCCGGTCATCAATATCTTG 1007 consensus_7711#1 TCAAAATTATTAACCTTGAATTTGCT---------CAAGATATTGATGACCGGTATTTTG 432 * * * * ** * **** * *** ** * * * * *** *** consensus_7711#0 AGCAAATTCAAGGTTAATAATTTTGAGATGACAATATCTTGGCAGTGATATCGCTGAAAT 1067 consensus_7711#1 TTCGCCTGAAAG------------------------------------------------ 444 * * *** consensus_7711#0 AAGTCGGTCACCAGCTTTGTTCATCTCATGCAGATCAAGCACCGACTACACGAGCTAAAT 1127 consensus_7711#1 ------------------------------------------------------------ consensus_7711#0 CACCGGCCACTCCAGCGACGAAGCCCAGGCGAGGGACCACTTCCTCAGCAGCGCGAAACA 1187 consensus_7711#1 ------------------------------------------------------------ consensus_7711#0 ACGAAGAAGCACGCCTCGAGAGTCGAGACCAAGAGCAAGCAGCGGGAGGACGAAGAAGGT 1247 consensus_7711#1 ------------------------------------------------------------ consensus_7711#0 AGAAGGGAGCGACGCGACGCGGTACCGCACCTCCCAGAGCTTGGGGTTGGCGACGAGGGC 1307 consensus_7711#1 ------------------------------------------------------------ consensus_7711#0 GCGGTGGCACCAGGGGCTGACGGCGAGCAGGGCGCAGGCGTCGCGCTGGGGGAGGCGCGG 1367 consensus_7711#1 ------------------------------------------------------------ consensus_7711#0 GCTCACCAGCTCCATCACCCGGGGCACCGTCTCCCGGCACCACGCCTCGTCGCCGGCCGC 1427 consensus_7711#1 ------------------------------------------------------------ consensus_7711#0 CGCCTCCGCCT 1438 consensus_7711#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||