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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7711#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1438 fasta sequence
[AAACAAACAGATCAACTTCCCACCACTGTAAGACAATCAAATACAAGTTCTACAAAATCTTTGTGATCTCCACCAAATTCAAAATACATATAGCCACTAGGTCGACAAAACTGTCTTGCTATTGTTTTTCTTCATGGAGTAACTCGATTGTGTTTTAAATGTTAACAGGGGGAACTGACCTCTGGTAGAATAAACAACTTAACAGAAATTCAGGTCAACTAGCTGTGTACTTTGAAGCACCGTAACAACGGGAACAGCTGAATCAGGTCATCCCGACTCCTCTTCTTAATACCAATACAGCCATTTACATCAAGAGTTGTGAGACTACGTGAGCAATGTTTTGACAAAGCCTCCAGGCAGACATCAGTTACACCAACTATTCCAAATAAACTAAGCAATTGAAGGGACCGGCATCCTTGTGCGATAGCTACCACCCCAACATCAGTAACACGTACACACCAGGACAAATTGAGATATGTCAGACATACACATCTTGATATACATGAAAGGCCATCATCAGTTACATTCTGGGCCCCACATAAGTCTAGAAATGTAAGGTTAGTTAAAGATCCTATCTTCTTATAAACCTTGTCGCTAAAACTTGACAGGGCATAAAGGTTCAAGCTTTCAAGAGAAGAACATTTCTGAAGCACTTCTTGAAGTCCATCGTCTGTCAACTTGATGCACCTGGTTATGTTCAACTTCTTTAGTCCTTCATAATTATCAGCAACTAGCTGCATACCTTTATCTGAGATATTCTTACAACCACTCAAGTTCAGGTCGACTATGTGCTTGCAGTTCTGCACAATGTGCCTAATGGTTAAGTCTGTCAGTCCAACAATCCAATAGATAGAAAGGGCCCGAAGGTTTGGACAAAGACTTGTAATAGTTTCAATCCCTTTGTCAGAAACTTTTTGGCATGCGTTTATGTTCAATAATTCCAACTCTTGCAGTGAGGTACATCCCATTTCTTTCAGGCGAACAAAATGCCGGTCATCAATATCTTGAGCAAATTCAAGGTTAATAATTTTGAGATGACAATATCTTGGCAGTGATATCGCTGAAATAAGTCGGTCACCAGCTTTGTTCATCTCATGCAGATCAAGCACCGACTACACGAGCTAAATCACCGGCCACTCCAGCGACGAAGCCCAGGCGAGGGACCACTTCCTCAGCAGCGCGAAACAACGAAGAAGCACGCCTCGAGAGTCGAGACCAAGAGCAAGCAGCGGGAGGACGAAGAAGGTAGAAGGGAGCGACGCGACGCGGTACCGCACCTCCCAGAGCTTGGGGTTGGCGACGAGGGCGCGGTGGCACCAGGGGCTGACGGCGAGCAGGGCGCAGGCGTCGCGCTGGGGGAGGCGCGGGCTCACCAGCTCCATCACCCGGGGCACCGTCTCCCGGCACCACGCCTCGTCGCCGGCCGCCGCCTCCGCCT]
[+] EMBL CB664450 [AAACAAACAGATCAACTTCCCACCACTGTAAGACAATCAAATACAAGTTCTACAAAATCTTTGTGATCTCCACCAAATTCAAAATACATATAGCCACTAGGTCGACAAAACTGTCTTGCTATTGTTTTTCTTCATGGAGTAACTCGATTGTGTTTTAAATGTTAACAGGGGGAACTGACCTCTGGTAGAATAAACAACTTAACAGAAATTCAGGTCAACTAGCTGTGTACTTTGAAGCACCGTAACAACGGGAACAGCTGAATCAGGTCATCCCGACTCCTCTTCTTAATACCAATACAGCCATTTACATCAAGAGTTGTGAGACTACGTGAGCAATGTTTTGACAAAGCCTCCAGGCAGACATCAGTTACACCAACTATTCCAAATAAACTAAGCAATTGAAGGGACCGGCATCCTTGTGCGATAGCTACCACCCCAACATCAGTAACACGTACACACCAGGACAAATTGAGATATGTCAGACATACACATCTTGATATACATGAAAGGCCATCATCAGTTACATTCTGGGCCCCACATAAGTCTAGAAATGTAAGGTTAGTTAAAGATCCTATCTTCTTATAAACCTTGTCGCTAAAACTTGACAGGGCATAAAGGTTCAAGCTTTCAAGAGAAGAACATTTCTGAAGCACTTCTTGAAGTCCATCGTCTGTCAACTTGATGCACCTGGTTATGTTCAACTTCTTTAGTCCTTCATAATTATCAGCAACTAGCTGCATACCTTTATCTGAGATATTCTTACAACCACTCAAGTTCAGGTCGACTATGTGCTTGCAGTTCTGCACAATGTGCCTAATGGTTAAGTCTGTCAGTC ]
[+] EMBL CB664490 [AAACAAACAGATCAACTTCCCACCACTGTAAGACAATCAAATACAAGTTCTACAAAATCTTTGTGATCTCCACCAAATTCAAAATACATATAGCCACTAGGTCGACAAAACTGTCTTGCTATTGTTTTTCTTCATGGAGTAACTCGATTGTGTTTTAAATGTTAACAGGGGGAACTGACCTCTGGTAGAATAAACAACTTAACAGAAATTCAGGTCAACTAGCTGTGTACTTTGAAGCACCGTAACAACGGGAACAGCTGAATCAGGTCATCCCGACTCCTCTTCTTAATACCAATACAGCCATTTACATCAAGAGTTGTGAGACTACGTGAGCAATGTTTTGACAAAGCCTCCAGGCAGACATCAGTTACACCAACTATTCCAAATAAACTAAGCAATTGAAGGGACCGGCATCCTTGTGCGATAGCTACCACCCCAACATCAGTAACACGTACACACCAGGACAAATTGAGATATGTCAGACATACACATCTTGATATACATGAAAGGCCATCATCAGTTACATTCTGGGCCCCACATAAGTCTAGAAATGTAAGGTTAGTTAAAGATCCTATCTTCTTATAAACCTTGTCGCTAAAACTTGACAGGGCATAAAGGTTCAAGCTTTCAAGAGAAGAACATTTCTGAAGCACTTCTTGAAGTCCATCGTCTGTCAACTTGATGCACCTGGTTATGTTCAACTTCTTTAGTCCTTCATAATTATCAGCAACTAGCTGCATACCTTTATCTGAGATATTCTTACAACCACTCAAGTTCAGGTCGACTATGTGCTTGCA ]
[-] EMBL CB664489 [ AAGAGAAGAACATTTCTGAAGCACTTCTTGAAGTCCATCGTCTGTCAACTTGATGCACCTGGTTATGTTCAACTTCTTTAGTCCTTCATAATTATCAGCAACTAGCTGCATACCTTTATCTGAGATATTCTTACAACCACTCAAGTTCAGGTCGACTATGTGCTTGCAGTTCTGCACAATGTGCCTAATGGTTAAGTCTGTCAGTCCAACAATCCAATAGATAGAAAGGGCCCGAAGGTTTGGACAAAGACTTGTAATAGTTTCAATCCCTTTGTCAGAAACTTTTTGGCATGCGTTTATGTTCAATAATTCCAACTCTTGCAGTGAGGTACATCCCATTTCTTTCAGGCGAACAAAATGCCGGTCATCAATATCTTGAGCAAATTCAAGGTTAATAATTTTGAGATGACAATATCTTGGCAGTGATATCGCTGAAATAAGTCGGTCACCAGCTTTGTTCATCTCATGCAGATCAAGCACCGACTACACGAGCTAAATCACCGGCCACTCCAGCGACGAAGCCCAGGCGAGGGACCACTTCCTCAGCAGCGCGAAACAACGAAGAAGCACGCCTCGAGAGTCGAGACCAAGAGCAAGCAGCGGGAGGACGAAGAAGGTAGAAGGGAGCGACGCGACGCGGTACCGCACCTCCCAGAGCTTGGGGTTGGCGACGAGGGCGCGGTGGCACCAGGGGCTGACGGCGAGCAGGGCGCAGGCGTCGCGCTGGGGGAGGCGCGGGCTCACCAGCTCCATCACCCGGGGCACCGTCTCCCGGCACCACGCCTCGTCGCCGGCCGCCGCCTCCGCCT]
[-] EMBL CB664449 [ TGTCAACTTGATGCACCTGGTTATGTTCAACTTCTNTAGTCCTTCATAATTATCAGCAACTAGCTGCATACCTTTATCTGAGATATTCTTACAACCACTCAAGTTCAGGTCGACTATGTGCTTGCAGTTCTGCACAATGTGCCTAATGGTTAAGTCTGTCAGTCCAACAATCCAATAGATAGAAAGGGCCCGAAGGTTTGGACAAAGACTTGTAATAGTTTCAATCCCTTTGTCAGAAACTTTTTGGCATGCGTTTATGTTCAATAATTCCAACTCTTGCAGTGAGGTACATCCCATTTCTTTCAGGCGAACAAAATGCCGGTCATCAATATCTTGAGCAAATTCAAGGTTAATAATTTTGAGATGACAATATCTTGGCAGTGATATCGCTGAAATAAGTCGGTCACCAGCTTTGTTCATCTCATGCAGATCAAGCACCGACTACACGAGCTAAATCACCGGCCACTCCAGCGACGAAGCCCAGGCGAGGGACCACTTCCTCAGCAGCGCGAAACAACGAAGAAGCACGCCTCGAGAGTCGAGACCAAGAGCAAGCAGCGGGAGGACGAAGAAGGTAGAAGGGAGCGACGCGACGCGGTACCGCACCTCCCAGAGCTTGGGGTTGGCGACGAGGGCGCGGTGGCACCAGGGGCTGACGGCGAGCAGGGCGCAGGCGTCGCGCTGGGGGAGGCGCGGGCTCACCAGCTCCATCACCCGGGGCACCGTCTCCCGGCACCACGCCTCGTCGCCGGCCGCCGCCTCCGCCT]
consensusID : consensus_7711#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence
[GGTAATAATCTTGCTTTTTTTCCCGAACCATGAACAAATGCCTCCTCAATATTTAATGTAGGTGCTTGATCTGCATGAGATGAACAAAGCTGGTGACCGACTTATTTCAGCGATATCACTGGCAAGAATAATCCTATNGTTATTATTATATTTTTTTTAGTGATGAACTCATGAACTGATTATTTTATGCTTGATCTACCTTCTGAATGATAATTCATACTATTTGTGTGGTTGCTCATATTTCTGTACTATTTGATAAAACATCAACGTTTTCTAGTGCACACTGCACAGCAGCATCATACTGTAGTCTCAGTTTAAAATCTTTAAGTTGCTTTGGTGACATGTTTTGTCCCATTCTTCCACAGCCAAGATATTGTCATCTCAAAATTATTAACCTTGAATTTGCTCAAGATATTGATGACCGGTATTTTGTTCGCCTGAAAG]
[+] EMBL CF305898 [GGTAATAATCTTGCTTTTTTTCCCGAACCATGAACAAATGCCTCCTCAATATTTAATGTAGGTGCTTGATCTGCATGAGATGAACAAAGCTGGTGACCGACTTATTTCAGCGATATCACTGGCAAGAATAATCCTATNGTTATTATTATATTTTTTTTAGTGATGAACTCATGAACTGATTATTTTATGCTTGATCTACCTTCTGAATGATAATTCATACTATTTGTGTGGTTGCTCATATTTCTGTACTATTTGATAAAACATCAACGTTTTCTAGTGCACACTGCACAGCAGCATCATACTGTAGTCTCAGTTTAAAATCTTTAAGTTGCTTTGGTGACATGTTTTGTCCCATTCTTCCACAGCCAAGATATTGTCATCTCAAAATTATTAACCTTGAATTTGCTCAAGATATTGATGACCGGTATTTTGTTCGCCTGAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7711#0 AAACAAACAGATCAACTTCCCACCACTGTAAGACAATCAAATACAAGTTCTACAAAATCT 60
consensus_7711#1 ------------------------------------------------------------
consensus_7711#0 TTGTGATCTCCACCAAATTCAAAATACATATAGCCACTAGGTCGACAAAACTGTCTTGCT 120
consensus_7711#1 ------------------------------------------------------------
consensus_7711#0 ATTGTTTTTCTTCATGGAGTAACTCGATTGTGTTTTAAATGTTAACAGGGGGAACTGACC 180
consensus_7711#1 ------------------------------------------------------------
consensus_7711#0 TCTGGTAGAATAAACAACTTAACAGAAATTCAGGTCAACTAGCTGTGTACTTTGAAGCAC 240
consensus_7711#1 ------------------------------------------------------------
consensus_7711#0 CGTAACAACGGGAACAGCTGAATCAGGTCATCCCGACTCCTCTTCTTAATACCAATACAG 300
consensus_7711#1 ------------------------------------------------------------
consensus_7711#0 CCATTTACATCAAGAGTTGTGAGACTACGTGAGCAATGTTTTGACAAAGCCTCCAGGCAG 360
consensus_7711#1 ------------------------------------------------------------
consensus_7711#0 ACATCAGTTACACCAACTATTCCAAATAAACTAAGCAATTGAAGGGACCGGCATCCTTGT 420
consensus_7711#1 ------------------------------------------------------------
consensus_7711#0 GCGATAGCTACCACCCCAACATCAGTAACACGTACACACCAGGACAAATTGAGATATGTC 480
consensus_7711#1 ------------------------------------------------------------
consensus_7711#0 AGACATACACATCTTGATATACATGAAAGGCCATCATCAGTTACATTCTGGGCCCCACAT 540
consensus_7711#1 ------------------------------------------------------------
consensus_7711#0 AAGTCTAGAAATGTAAGGTTAGTTAAAGATCCTATCTTCTTAT--AAACCTTGTCGCTAA 598
consensus_7711#1 ---------------------GGTAATAATCTTGCTTTTTTTCCCGAACCATGAACAAAT 39
* *** *** * ** ** **** ** *
consensus_7711#0 AACTTGACAGGGCATAA---AGGTTCAAGCTTT-CAAGAGAAGAACATTTCTGAAGCACT 654
consensus_7711#1 GCCTCCTCAATATTTAATGTAGGTGCTTGATCTGCATGAGATGAACAAAGCTGGTGACCG 99
** ** *** **** * * * * ** **** ***** *** * *
consensus_7711#0 TCTTGAAGTCCATCGTCTGTCAACTTGATGCACCTGGTTATGTTCAACTTCTTTAGTCCT 714
consensus_7711#1 ACTT--ATTTCAGCGA-TATCA--CTGGCAAGAATAATCCTATNGTTATTATTATATTTT 154
*** * * ** ** * *** ** * * * * ** ** * *
consensus_7711#0 TCATAATTATCAGCA-ACTAGCTGCATACCTT-TATCTGAGATATTCTTACAACCACTCA 772
consensus_7711#1 TTTTAGTGATGAACTCATGAACTGATTATTTTATGCTTGATCTACCTTCTGAATGAT--- 211
* ** * ** * * * * *** ** ** * *** ** * ** *
consensus_7711#0 AGTTCAGGTCGACTATGTGCTTGC----AGTTCTGCACAATGTGCCTAATGGTTAA-GTC 827
consensus_7711#1 AATTCATACTATTTGTGTGGTTGCTCATATTTCTGTACTATTTGATAAAACATCAACGTT 271
* **** * **** **** * ***** ** ** ** ** * ** **
consensus_7711#0 TGTCAGTCCAACAATCCAATAGATAGAAAGGGCCCGAAGGTTTGGACAAAGACTTGTAAT 887
consensus_7711#1 TTCTAGTGCA-CACTGCA--CAGCAGCATCATACTGTAGTCTCAGTTTAAAATCTTTAA- 327
* *** ** ** * ** ** * * * ** * * ** * * ***
consensus_7711#0 AGTTTCAATCCCTTTGTCAGAAACTTTTTGGCATGCGTTTATGTTCAATAATTCCAACTC 947
consensus_7711#1 ------GTTGCTTTGGTGACATGTTTTGTCCCATTCTTCCACAGCCAAGATATTGTCATC 381
* * ** ** * * *** * *** * * * *** * * **
consensus_7711#0 TTGCAGTGAGGTACATCCCATTTCTTTCAGGCGAACAAAATGCCGGTCATCAATATCTTG 1007
consensus_7711#1 TCAAAATTATTAACCTTGAATTTGCT---------CAAGATATTGATGACCGGTATTTTG 432
* * * * ** * **** * *** ** * * * * *** ***
consensus_7711#0 AGCAAATTCAAGGTTAATAATTTTGAGATGACAATATCTTGGCAGTGATATCGCTGAAAT 1067
consensus_7711#1 TTCGCCTGAAAG------------------------------------------------ 444
* * ***
consensus_7711#0 AAGTCGGTCACCAGCTTTGTTCATCTCATGCAGATCAAGCACCGACTACACGAGCTAAAT 1127
consensus_7711#1 ------------------------------------------------------------
consensus_7711#0 CACCGGCCACTCCAGCGACGAAGCCCAGGCGAGGGACCACTTCCTCAGCAGCGCGAAACA 1187
consensus_7711#1 ------------------------------------------------------------
consensus_7711#0 ACGAAGAAGCACGCCTCGAGAGTCGAGACCAAGAGCAAGCAGCGGGAGGACGAAGAAGGT 1247
consensus_7711#1 ------------------------------------------------------------
consensus_7711#0 AGAAGGGAGCGACGCGACGCGGTACCGCACCTCCCAGAGCTTGGGGTTGGCGACGAGGGC 1307
consensus_7711#1 ------------------------------------------------------------
consensus_7711#0 GCGGTGGCACCAGGGGCTGACGGCGAGCAGGGCGCAGGCGTCGCGCTGGGGGAGGCGCGG 1367
consensus_7711#1 ------------------------------------------------------------
consensus_7711#0 GCTCACCAGCTCCATCACCCGGGGCACCGTCTCCCGGCACCACGCCTCGTCGCCGGCCGC 1427
consensus_7711#1 ------------------------------------------------------------
consensus_7711#0 CGCCTCCGCCT 1438
consensus_7711#1 -----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||