cluster # 7712

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7712 cluster # 7712 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7712#0 length = 651 sequences # 2

consensus_7712#1 length = 217 sequences # 2
consensus_7712#2 length = 191 sequences # 1

consensusID : consensus_7712#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 651
fasta sequence

                              [GACGCCGGCGGTCCAGCAGCAGCCTCAGCCTACGGCGGCGGCAGGCGCCGGCGAAGGTGTCGTGCCAGCTCCGACGACCTCGACGGCGGCGTCGAACGTGGCAGCTGCCGATACGACTTCCAAGAAGATACCAGTGGAAGGAGCAGGGCCGCACGAGGAGTACGTGCCGGCGGCGGAGGTGGCGTCGGCGCTGCCGGTGCCGATCCCCGACGGGAACCCCGTGGAGGGCGCCTTCACCAACGGCGGCCTCGGCGGCAACCAGGCCTTCTTCCCCGGCTCCAGCGGCTACGGCACGGCGGCGGGCCTCGGCGCCGGCGGCTTCGGCCCGTACGGCGGCTACGGCGGCGGCCCAGGGACGTACGGCTACAACGGCCCATTGTACTTCGGCTCCGCGCCGACGAGAACCGGCTCGCCGGCCGGATCTTGCGCCGCCGCCGCCGTGTTGCTCCTTCTCTCCGCCGCGGCCATGTATATTTGAGATAATAATTAGTTAATTACTCGGTTATAAATCCTAATTAATTAAGCTAGTATGCGGGAGCAGTAAATTTACACTCATGTTAATGTTAATTACCTAACTAATACTCCTATATATGATTAATGATTTGTATATGTTAATGGTGATTATTTTTCGAGGGGATAAAAAAAAAAAAA]

[+] EMBL CA755326             [GACGCCGGCGGTCCAGCAGCAGCCTCAGCCTACGGCGGCGGCAGGCGCCGGCGAAGGTGTCGTGCCAGCTCCGACGACCTCGACGGCGGCGTCGAACGTGGCAGCTGCCGATACGACTTCCAAGAAGATACCAGTGGAAGGAGCAGGGCCGCACGAGGAGTACGTGCCGGCGGCGGAGGTGGCGTCGGCGCTGCCGGTGCCGATCCCCGACGGGAACCCCGTGGAGGGCGCCTTCACCAACGGCGGCCTCGGCGGCAACCAGGCCTTCTTCCCCGGCTCCAGCGGCTACGGCACGGCGGCGGGCCTCGGCGCCGGCGGCTTCGGCCCGTACGGCGGCTACGGCGGCGGCCCAGGGACGTACGGCTACAACGGCCCATTGTACTTCGGCTCCGCGCCGACGAGAACCGGCTCGCCGGCCGGATCTTGCGCCGCCGCCGCCGTGTTGCTCCTTCTCTCCGCCGCGGCCATGTATATTTGAGATAATAATTAGTTAATTACTCGGTTATAAATCCTAATTAATTAAGCTAGTATGCGGGAGCAGTAAATTTACACTCATGTTAATGTTAATTACCTAACTAATACTCCTATATATGATTAATGATTTGTATATGTTAATGGTGATTATTTTTCGAGGGGATAAAAAAAAAAAAA]
[+] EMBL AU198165             [GACGCCGGCGGTCCAGCAGCAGCCTCAGCCTACGGCGGCGGCAGGCGCCGGCGAAGGTGTCGTGCCAGCTCCGACGACCTCGACGGCGGCGTCGAACGTGGCAGCTGCCGATACGACTTCCAAGAAGATACCAGTGGAAGGAGCAGGGCCGCACGAGGAGTACGTGCCGGCGGCGGAGGTGGCGTCGGCGCTGCCGGTGCCGATCCCCGACGGGAACCCCGTGGAGGGCGCCTTCACCAACGGCGGCCTCGGCGGCAACCAGGCCTTCTTCCCCGGCTCCAGCGGCTACGGCACGGCGGCG                                                                                                                                                                                                                                                                                                                                                              ]




>consensus_7712#0
GACGCCGGCGGTCCAGCAGCAGCCTCAGCCTACGGCGGCGGCAGGCGCCGGCGAAGGTGT
CGTGCCAGCTCCGACGACCTCGACGGCGGCGTCGAACGTGGCAGCTGCCGATACGACTTC
CAAGAAGATACCAGTGGAAGGAGCAGGGCCGCACGAGGAGTACGTGCCGGCGGCGGAGGT
GGCGTCGGCGCTGCCGGTGCCGATCCCCGACGGGAACCCCGTGGAGGGCGCCTTCACCAA
CGGCGGCCTCGGCGGCAACCAGGCCTTCTTCCCCGGCTCCAGCGGCTACGGCACGGCGGC
GGGCCTCGGCGCCGGCGGCTTCGGCCCGTACGGCGGCTACGGCGGCGGCCCAGGGACGTA
CGGCTACAACGGCCCATTGTACTTCGGCTCCGCGCCGACGAGAACCGGCTCGCCGGCCGG
ATCTTGCGCCGCCGCCGCCGTGTTGCTCCTTCTCTCCGCCGCGGCCATGTATATTTGAGA
TAATAATTAGTTAATTACTCGGTTATAAATCCTAATTAATTAAGCTAGTATGCGGGAGCA
GTAAATTTACACTCATGTTAATGTTAATTACCTAACTAATACTCCTATATATGATTAATG
ATTTGTATATGTTAATGGTGATTATTTTTCGAGGGGATAAAAAAAAAAAAA

consensusID : consensus_7712#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 217
fasta sequence

                              [ATATTTGAGATAATAATTAGTTAATTACTCGGTTATAAATCCTAATTAATTAAGCTAGTATGCGGGAGCAGTAAATTTACNCTCATGTTAATGTTAATTACCTAAGTAATACTCCTATATATGATTAATGATTTGTATATGTTAATGGNGATTATTTTTNGAGGGGATAGACAGTGAGTTCCTGCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU198166             [ATATTTGAGATAATAATTAGTTAATTACTCGGTTATAAATCCTAATTAATTAAGCTAGTATGCGGGAGCAGTAAATTTACNCTCATGTTAATGTTAATTACCTAAGTAATACTCCTATATATGATTAATGATTTGTATATGTTAATGGNGATTATTTTTNGAGGGGATAGACAGTGAGTTCCTGCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU198206             [ATATTTGAGATAATAATTAGTTAATTACTCGGTTATAAATCCTAATTAATTAAGCTAGTATGCGGGAGCAGTAAATTTACNCTCATGTTAATGTTAATTACCTAAGTAATACTCCTATATATGATTAATGATTTGTATATGTTAATGGNGATTATTTTTNGAGGGGATANACAGTGAGTTCCTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_7712#1
ATATTTGAGATAATAATTAGTTAATTACTCGGTTATAAATCCTAATTAATTAAGCTAGTA
TGCGGGAGCAGTAAATTTACNCTCATGTTAATGTTAATTACCTAAGTAATACTCCTATAT
ATGATTAATGATTTGTATATGTTAATGGNGATTATTTTTNGAGGGGATAGACAGTGAGTT
CCTGCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_7712#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 191
fasta sequence

                              [CCTACGGCGGCCGGCAGGNGCGGCCGAAGGTGTCGTGCCANCTCCGACGACCTCGACGGCGGCGTNGAACGTGGGNANTTGCCGATTACGACTTCCAAGAAGATACCANTTGGAAGGAGCAGGGCCGCACGAGGAGTACGTNCCGGCGGCGGAGGTNGCGTCGGCGCTTCCGGTTNCCGATCCCCGACGGG]

[+] EMBL OSS1488A             [CCTACGGCGGCCGGCAGGNGCGGCCGAAGGTGTCGTGCCANCTCCGACGACCTCGACGGCGGCGTNGAACGTGGGNANTTGCCGATTACGACTTCCAAGAAGATACCANTTGGAAGGAGCAGGGCCGCACGAGGAGTACGTNCCGGCGGCGGAGGTNGCGTCGGCGCTTCCGGTTNCCGATCCCCGACGGG]




>consensus_7712#2
CCTACGGCGGCCGGCAGGNGCGGCCGAAGGTGTCGTGCCANCTCCGACGACCTCGACGGC
GGCGTNGAACGTGGGNANTTGCCGATTACGACTTCCAAGAAGATACCANTTGGAAGGAGC
AGGGCCGCACGAGGAGTACGTNCCGGCGGCGGAGGTNGCGTCGGCGCTTCCGGTTNCCGA
TCCCCGACGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7712#0      GACGCCGGCGGTCCAGCAGCAGCCTCAGCCTACGGCGGC-GGCAGGCGCCGGCGAAGGTG 59
consensus_7712#2      ----------------------------CCTACGGCGGCCGGCAGGNGCGGCCGAAGGTG 32
consensus_7712#1      -------------------------ATATTTGAGATAATAATTAGTTAATTACTCGGTTA 35
                                                    *  *         **       *   * * 

consensus_7712#0      TCGTGCCAGCTCCGACGACCTCG---ACGGCGGCGTCGAACGTGG-CAGCTGCCGAT-AC 114
consensus_7712#2      TCGTGCCANCTCCGACGACCTCG---ACGGCGGCGTNGAACGTGGGNANTTGCCGATTAC 89
consensus_7712#1      TAAATCCTAATTAATTAAGCTAGTATGCGGGAGCAGTAAATTTACNCTCATGTTAATGTT 95
                      *    **   *      * ** *    ***  **    **  *       **   **   

consensus_7712#0      GACTTCCAAGAAGATACCAGT-GGAAGGAGCAGGG--CCGCACG----AGGAGTACGTGC 167
consensus_7712#2      GACTTCCAAGAAGATACCANTTGGAAGGAGCAGGG--CCGCACG----AGGAGTACGTNC 143
consensus_7712#1      AATTACCTAAGTAATACTCCTATATATGATTAATGATTTGTATATGTTAATGGNGATTAT 155
                       * * ** *    ****   *    * **  *  *    * *      *   *    *  

consensus_7712#0      CGGCGGCGGAGGTGGCGTCGGCGCTGCCGGT-GCCGATCCCCGACGGGAACCCCGTGGAG 226
consensus_7712#2      CGGCGGCGGAGGTNGCGTCGGCGCTTCCGGTTNCCGATCCCCGACGGG------------ 191
consensus_7712#1      TTTTNGAGGGGATAGACAGTGAGTTCCTGCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 215
                           * ** * * *     * * * * *       *      *                

consensus_7712#0      GGCGCCTTCACCAACGGCGGCCTCGGCGGCAACCAGGCCTTCTTCCCCGGCTCCAGCGGC 286
consensus_7712#2      ------------------------------------------------------------
consensus_7712#1      AA---------------------------------------------------------- 217
                                                                                  

consensus_7712#0      TACGGCACGGCGGCGGGCCTCGGCGCCGGCGGCTTCGGCCCGTACGGCGGCTACGGCGGC 346
consensus_7712#2      ------------------------------------------------------------
consensus_7712#1      ------------------------------------------------------------
                                                                                  

consensus_7712#0      GGCCCAGGGACGTACGGCTACAACGGCCCATTGTACTTCGGCTCCGCGCCGACGAGAACC 406
consensus_7712#2      ------------------------------------------------------------
consensus_7712#1      ------------------------------------------------------------
                                                                                  

consensus_7712#0      GGCTCGCCGGCCGGATCTTGCGCCGCCGCCGCCGTGTTGCTCCTTCTCTCCGCCGCGGCC 466
consensus_7712#2      ------------------------------------------------------------
consensus_7712#1      ------------------------------------------------------------
                                                                                  

consensus_7712#0      ATGTATATTTGAGATAATAATTAGTTAATTACTCGGTTATAAATCCTAATTAATTAAGCT 526
consensus_7712#2      ------------------------------------------------------------
consensus_7712#1      ------------------------------------------------------------
                                                                                  

consensus_7712#0      AGTATGCGGGAGCAGTAAATTTACACTCATGTTAATGTTAATTACCTAACTAATACTCCT 586
consensus_7712#2      ------------------------------------------------------------
consensus_7712#1      ------------------------------------------------------------
                                                                                  

consensus_7712#0      ATATATGATTAATGATTTGTATATGTTAATGGTGATTATTTTTCGAGGGGATAAAAAAAA 646
consensus_7712#2      ------------------------------------------------------------
consensus_7712#1      ------------------------------------------------------------
                                                                                  

consensus_7712#0      AAAAA 651
consensus_7712#2      -----
consensus_7712#1      -----