|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7717#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1166 fasta sequence
[ATGATCGGTTTAACGGAAGCTGTGGCAATTGGGAGGACGTTTGCTGCTCTGAAGGACTATCAATTAGATGGAAACAAGGAGATGGTAGCACTTGGAACTATGAACATAGCAGGGTCAATGACATCTTGTTATATTGCAACAGGTTCTTTCTCTCGTTCCGCAGTCAATTTCATGGCTGGCTGCCAAACACCAGTGTCCAATATCATTATGTCAGCAGTTGTGCTCCTGACCTTGTTGGTCATCACACCACTCTTCAAGTACACACCAAATGCGATCCTCGGGTCGATAATCATTTCTGCGGTGATCGGCCTTGTGGACTACGAAGCAGTAATTCTCATTTGGAAAGTTGACAAAATGGATTTCATTTCTTGCATGGGAGCATTCTTTGGTGTGGTCTTCGCATCTGTTGAGATAGGTCTTTTAATAGCTGTATCGATTTCATTTGCTAAAATTCTTCTTCAAGTAACAAGGCCAAGGACTGTACTTCTGGGAAACCTTCCAGGCACCACAATATACAGGAACACTGATCAGTATCCAGAAGCAAGACATATTCCTGGGGTTGTAATAGTGAGGGTTGATTCTGCTATCTACTTCTCCAACTCAAACTATGTCCGGGAGAGAACTCTTAGGTGGTTGACGGAGGAAGAAGAGAAAGCCAAAGCAGAGGGACAGTCTAAAATCAATTTCTTGATCATAGAGATGTCCCCGGTCATAGATATCGATACAAGTGGCATCCATGCTCTAGAAGATCTATACAAGAATCTTAAGAAGAGAGACATTCAGCTCATCCTAGCAAATCCTGGATCCATCGTCATGGAAAAGCTCTTGTCATCCAAGCTCAACGAGCACATAGGGAGTAACAATATTTTCCTCACGGTTGCTGACGCTGTGCGTTTCTGCACAAGAAAGTCGATGCAAGAACCATGAAGAAAAATAGATGAGAGATAAAGAGAGAGATGATGAACAATATTATATAGCATATGCGTATCATCTACTTATGATATAGAGGAATAGATCCATAGTCAAATCAGCTGGTTCAGTGAAATACTGGTGATAGCATATACAATTGGAAATAGTTGTATGGTGAATAGGGTTGCTATAAAC-CAAAA-TGTCATGACAGACAAATGGAAGGAAACTGATAATAATAGGTTAAGGCAATCCTTCCT]
[+] EMBL AK062031 [ATGATCGGTTTAACGGAAGCTGTGGCAATTGGGAGGACGTTTGCTGCTCTGAAGGACTATCAATTAGATGGAAACAAGGAGATGGTAGCACTTGGAACTATGAACATAGCAGGGTCAATGACATCTTGTTATATTGCAACAGGTTCTTTCTCTCGTTCCGCAGTCAATTTCATGGCTGGCTGCCAAACACCAGTGTCCAATATCATTATGTCAGCAGTTGTGCTCCTGACCTTGTTGGTCATCACACCACTCTTCAAGTACACACCAAATGCGATCCTCGGGTCGATAATCATTTCTGCGGTGATCGGCCTTGTGGACTACGAAGCAGTAATTCTCATTTGGAAAGTTGACAAAATGGATTTCATTTCTTGCATGGGAGCATTCTTTGGTGTGGTCTTCGCATCTGTTGAGATAGGTCTTTTAATAGCTGTATCGATTTCATTTGCTAAAATTCTTCTTCAAGTAACAAGGCCAAGGACTGTACTTCTGGGAAACCTTCCAGGCACCACAATATACAGGAACACTGATCAGTATCCAGAAGCAAGACATATTCCTGGGGTTGTAATAGTGAGGGTTGATTCTGCTATCTACTTCTCCAACTCAAACTATGTCCGGGAGAGAACTCTTAGGTGGTTGACGGAGGAAGAAGAGAAAGCCAAAGCAGAGGGACAGTCTAAAATCAATTTCTTGATCATAGAGATGTCCCCGGTCATAGATATCGATACAAGTGGCATCCATGCTCTAGAAGATCTATACAAGAATCTTAAGAAGAGAGACATTCAGCTCATCCTAGCAAATCCTGGATCCATCGTCATGGAAAAGCTCTTGTCATCCAAGCTCAACGAGCACATAGGGAGTAACAATATTTTCCTCACGGTTGCTGACGCTGTGCGTTTCTGCACAAGAAAGTCGATGCAAGAACCATGAAGAAAAATAGATGAGAGATAAAGAGAGAGATGATGAACAATATTATATAGCATATGCGTATCATCTACTTATGATATAGAGGAATAGATCCATAGTCAAATCAGCTGGTTCAGTGAAATACTGGTGATAGCATATACAATTGGAAATAGTTGTATGGTGAATAGGGTTGCTATAAAC CAAAA TGTCATGACAGACAAATGGAAGGAAACTGATAATAATAGGTTAAGGCAATCCTTCCT]
[+] EMBL CF196279 [ AGATGGAAACAAGGAGATGGTAGCACTTGGAACTATGAACATAGCAGGGTCAATGACATCATGTTATATTGCGACAGGTTCTTTCTCTCGTTCCGCAGTCAATTTCATGGCTGGCTGCCAAACACCAGTGTCCAATATCATTATGTCAGCAGTTGTGCTCCTGACCTTGTTGGTCATCACACCACTCTTCAAGTACACACCAAATGCGATCCTCGGGTCGATAATCATTTCTGCGGTGATCGGCCTTGTGGACTACGAAGCAGTAATTCTCATTTGGAAAGTTGACAAAATGGATTTCATTGCTTGCATGGGAGCATTCTTTGGTGTGGTCTTCGCATCTGTTGAGATAGGTCTTTTAATAGCTGTATCGATTTCATTTGCTNNNATTCTTCTTCAAGTAACAAGGCCAAGGACTGTACTTCTGGGAAACCTTCCAGGCACCACAATATACAGNNNCACTGATCAGTATCCANNNGNNNNNNNTATTCNNNNNGTTGTANNNNNGNNNNNTGATTCTGCTATCTACTTnnnnn ]
[-] EMBL CB669750 [ TTGACAAAATGGATTTCATTTCTTGCATGGGAGCATTCTTTGGTGTGGTCTTCGCATCTGTTGAGATAGGTCTTTTAATAGCTGTATCGATTTCATTTGCTAAAATTCTTCTTCAAGTAACAAGGCCAAGGACTGTACTTCTGGGAAACCTTCCAGGCACCACAATATACAGGAACACTGATCAGTATCCAGAAGCAAGACATATTCCTGGGGTTGTAATAGTGAGGGTTGATTCTGCTATCTACTTCTCCAACTCAAACTATGTCCGGGAGAGAACTCTTAGGTGGTTGACGGAGGAAGAAGAGAAAGCCAAAGCAGAGGGACAGTCTAAAATCAATTTCTTGATCATAGAGATGTCCCCGGTCATAGATATCGATACAAGTGGCATCCATGCTCTAGAAGATCTATACAAGAATCTTAAGAAGAGAGACATTCAGCTCATCCTAGCAAATCCTGGATCCATCGTCATGGAAAAGCTCTTGTCATCCAAGCTCAACGAGCACATAGGGAGTAACAATATTTTCCTCACGGTTGCTGACGCTGTGCGTTTCTGCACAAGAAAGTCGATGCAAGAACCATGAAGAAAAATAGATGAGAGATAAAGAGAGAGATGATGAACAATATTATATAGCATATGCGTATCATCTACTTATGATATAGAGGAATAGATCCATAGTCAAATCAGCTGGTTCAGTGAAATACTGGTGATAGCATATACAATTGGAAATAGTTGTATGGTGAATAGGGTTGCTATAAACTCAAAATTGTCATGACAGAGAAATGGAAGGAAACTGATAATAATAGGTT ]
[+] EMBL AU161856 [ TATCGATACAAGTGGCATCCATGCTCTAGAAGATCTATACAAGAATCTTAAGAAGAGAGACATTCAGCTCATCCTAGCAAATCCTGGATCCATCGTCATGGAAAAGCTCTTGTCATCCAAGCTCAACGAGCACATAGGGAGTAACAATATTTTCCTCACGGTTGCTGACGCTGTGCGTTTCTGCACAAGAAAGTCGATGCAAGAACCATGAAGAAAAATAGATGAGAGATAAAGAGAGAGATGATGAACAATATTATATAGCATATGCGTATCATCTACTTATGATATAGAGGAATAGATCCATAGTCAAATCAGCTGGTTCAGTGAAATACTGGTGATAGCATATACAATTGGAAATAGTTGTATGGTGAAaaaaaaaaa ]
consensusID : consensus_7717#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence
[GGACAGTCTAAAATCAATTTCTNGATCATAGAGATGTCCCCGGTCATAGATATCGATACAAGTGGCATCCATGCTCTAGAAGATCTATACCAAGAATCTTAAGAAGAGAGACATTCAGCTCATCCTAGCAAATCCTGGATCCATCGTCATGGAAAAGCTCTTGTCATCCAAGCTCAACGAGCACATAGGGAGTAACAATATTTTCCTCACGGTTGCTGACGCTGTGCGTTTCTGCACAAGAAAGTCGATGCAAGAACCATGAAGAAAAATAGATGAGAGACAAAGAGAGAGATGATGAACAATATTATATAGCATATGCGTATCATCTACTTATGATATAGAGGAATAGATCCATAGGCAAATCAGCTGGTTCAGTGAAATACTGGTGATAGCATATACAATTGGAAATAGTTGTATGGTGAATAGGGTTGCTATAAACCCAAATGTCATGACAGACAAATGGAAGGAAACTGATAATAATAGGTTAAGGCCAAAAAAAAAA]
[+] EMBL BQ906864 [GGACAGTCTAAAATCAATTTCTNGATCATAGAGATGTCCCCGGTCATAGATATCGATACAAGTGGCATCCATGCTCTAGAAGATCTATACCAAGAATCTTAAGAAGAGAGACATTCAGCTCATCCTAGCAAATCCTGGATCCATCGTCATGGAAAAGCTCTTGTCATCCAAGCTCAACGAGCACATAGGGAGTAACAATATTTTCCTCACGGTTGCTGACGCTGTGCGTTTCTGCACAAGAAAGTCGATGCAAGAACCATGAAGAAAAATAGATGAGAGACAAAGAGAGAGATGATGAACAATATTATATAGCATATGCGTATCATCTACTTATGATATAGAGGAATAGATCCATAGGCAAATCAGCTGGTTCAGTGAAATACTGGTGATAGCATATACAATTGGAAATAGTTGTATGGTGAATAGGGTTGCTATAAACCCAAATGTCATGACAGACAAATGGAAGGAAACTGATAATAATAGGTTAAGGCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7717#0 ATGATCGGTTTAACGGAAGCTGTGGCAATTGGGAGGACGTTTGCTGCTCTGAAGGACTAT 60
consensus_7717#1 ------------------------------------------------------------
consensus_7717#0 CAATTAGATGGAAACAAGGAGATGGTAGCACTTGGAACTATGAACATAGCAGGGTCAATG 120
consensus_7717#1 ------------------------------------------------------------
consensus_7717#0 ACATCTTGTTATATTGCAACAGGTTCTTTCTCTCGTTCCGCAGTCAATTTCATGGCTGGC 180
consensus_7717#1 ------------------------------------------------------------
consensus_7717#0 TGCCAAACACCAGTGTCCAATATCATTATGTCAGCAGTTGTGCTCCTGACCTTGTTGGTC 240
consensus_7717#1 ------------------------------------------------------------
consensus_7717#0 ATCACACCACTCTTCAAGTACACACCAAATGCGATCCTCGGGTCGATAATCATTTCTGCG 300
consensus_7717#1 ------------------------------------------------------------
consensus_7717#0 GTGATCGGCCTTGTGGACTACGAAGCAGTAATTCTCATTTGGAAAGTTGACAAAATGGAT 360
consensus_7717#1 ------------------------------------------------------------
consensus_7717#0 TTCATTTCTTGCATGGGAGCATTCTTTGGTGTGGTCTTCGCATCTGTTGAGATAGGTCTT 420
consensus_7717#1 ------------------------------------------------------------
consensus_7717#0 TTAATAGCTGTATCGATTTCATTTGCTAAAATTCTTCTTCAAGTAACAAGGCCAAGGACT 480
consensus_7717#1 ------------------------------------------------------------
consensus_7717#0 GTACTTCTGGGAAACCTTCCAGGCACCACAATATACAGGAACACTGATCAGTATCCAGAA 540
consensus_7717#1 ------------------------------------------------------------
consensus_7717#0 GCAAGACATATTCCTGGGGTTGTAATAGTGAGGGTTGATTCTGCTATCTACTTCTCCAAC 600
consensus_7717#1 ------------------------------------------------------------
consensus_7717#0 TCAAACTATGTCCGGGAGAGAACTCTTAGGTGGTTGACGGAGGAAGAAGAGAAAGCCAAA 660
consensus_7717#1 ------------------------------------------------------------
consensus_7717#0 GCAGAGGGACAGTCTAAAATCAATTTCTTGATCATAGAGATGTCCCCGGTCATAGATATC 720
consensus_7717#1 ------GGACAGTCTAAAATCAATTTCTNGATCATAGAGATGTCCCCGGTCATAGATATC 54
********************** *******************************
consensus_7717#0 GATACAAGTGGCATCCATGCTCTAGAAGATCTATAC-AAGAATCTTAAGAAGAGAGACAT 779
consensus_7717#1 GATACAAGTGGCATCCATGCTCTAGAAGATCTATACCAAGAATCTTAAGAAGAGAGACAT 114
************************************ ***********************
consensus_7717#0 TCAGCTCATCCTAGCAAATCCTGGATCCATCGTCATGGAAAAGCTCTTGTCATCCAAGCT 839
consensus_7717#1 TCAGCTCATCCTAGCAAATCCTGGATCCATCGTCATGGAAAAGCTCTTGTCATCCAAGCT 174
************************************************************
consensus_7717#0 CAACGAGCACATAGGGAGTAACAATATTTTCCTCACGGTTGCTGACGCTGTGCGTTTCTG 899
consensus_7717#1 CAACGAGCACATAGGGAGTAACAATATTTTCCTCACGGTTGCTGACGCTGTGCGTTTCTG 234
************************************************************
consensus_7717#0 CACAAGAAAGTCGATGCAAGAACCATGAAGAAAAATAGATGAGAGATAAAGAGAGAGATG 959
consensus_7717#1 CACAAGAAAGTCGATGCAAGAACCATGAAGAAAAATAGATGAGAGACAAAGAGAGAGATG 294
********************************************** *************
consensus_7717#0 ATGAACAATATTATATAGCATATGCGTATCATCTACTTATGATATAGAGGAATAGATCCA 1019
consensus_7717#1 ATGAACAATATTATATAGCATATGCGTATCATCTACTTATGATATAGAGGAATAGATCCA 354
************************************************************
consensus_7717#0 TAGTCAAATCAGCTGGTTCAGTGAAATACTGGTGATAGCATATACAATTGGAAATAGTTG 1079
consensus_7717#1 TAGGCAAATCAGCTGGTTCAGTGAAATACTGGTGATAGCATATACAATTGGAAATAGTTG 414
*** ********************************************************
consensus_7717#0 TATGGTGAATAGGGTTGCTATAAACCAAAATGTCATGACAGACAAATGGAAGGAAACTGA 1139
consensus_7717#1 TATGGTGAATAGGGTTGCTATAAACCCAAATGTCATGACAGACAAATGGAAGGAAACTGA 474
************************** *********************************
consensus_7717#0 TAATAATAGGTTAAGGCAATCCTTCCT- 1166
consensus_7717#1 TAATAATAGGTTAAGGCCAAAAAAAAAA 502
***************** *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||