cluster # 772

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Oryza sativa
cluster # 772 cluster # 772 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_772#0 length = 697 sequences # 1

consensus_772#1 length = 526 sequences # 1

consensusID : consensus_772#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 697
fasta sequence

                              [AACGTCGNTGGGACANCAAGAACGACCCTCCTATGGGNTGCGNTTCGTTCAACGCTCAGGGTCATCATCCTTGACCCACCCCGGCCAGGTCGGTGCTGGTTACGCCCCCGTTTTGGACTGCCACACTGCCCACATCGCCTGCAAGTTNTNTGAGATCCTTGAGAAGCTTGCCGCCGTACCGGCAAGTCCATCGAGTCCAACCCCAAGTTCATCAAGTCGGGTGACGCTGCCATCGTCAAGATGATTCCGTCCAAGCCCATGTGTGTCGAGACTTTCTCCGAGTACCCTCCCCTTGGTCGTTTCGCCGTCCGTGACATGCGTCAGACCGTCGCTGTCGGTGTCATCAAGAGCGTCGACAAGTCCCAGGGTACCCAGGGCAAGGTCACCAAGTCCGCTGCCAAGGCCGCCAAGAAATAAGCTGCTCAACCAACAGCAACATCTAATGTCGAGCCACGACAAGCAGGAAGCATGTCGTAGCATCTTGGGCACTTCCTCGTTCGCAACGAGGTTTCGGTCAATTTTGCTTTATCACAAAAGAGTACTCGGTTTTTATTGGGGCACATGATGAAATGACGGTTTGGGATTTCGTAACTCAAAAAAATTCTTGACATGTGCTTTAGTCTACATAGAGTCCTCAGAAGTGATCTCGGCGTTTGGTCATGACTTAAACGAAATTTCTTTTTTTCTAAAAAAAAAA]

[+] EMBL AT003482             [AACGTCGNTGGGACANCAAGAACGACCCTCCTATGGGNTGCGNTTCGTTCAACGCTCAGGGTCATCATCCTTGACCCACCCCGGCCAGGTCGGTGCTGGTTACGCCCCCGTTTTGGACTGCCACACTGCCCACATCGCCTGCAAGTTNTNTGAGATCCTTGAGAAGCTTGCCGCCGTACCGGCAAGTCCATCGAGTCCAACCCCAAGTTCATCAAGTCGGGTGACGCTGCCATCGTCAAGATGATTCCGTCCAAGCCCATGTGTGTCGAGACTTTCTCCGAGTACCCTCCCCTTGGTCGTTTCGCCGTCCGTGACATGCGTCAGACCGTCGCTGTCGGTGTCATCAAGAGCGTCGACAAGTCCCAGGGTACCCAGGGCAAGGTCACCAAGTCCGCTGCCAAGGCCGCCAAGAAATAAGCTGCTCAACCAACAGCAACATCTAATGTCGAGCCACGACAAGCAGGAAGCATGTCGTAGCATCTTGGGCACTTCCTCGTTCGCAACGAGGTTTCGGTCAATTTTGCTTTATCACAAAAGAGTACTCGGTTTTTATTGGGGCACATGATGAAATGACGGTTTGGGATTTCGTAACTCAAAAAAATTCTTGACATGTGCTTTAGTCTACATAGAGTCCTCAGAAGTGATCTCGGCGTTTGGTCATGACTTAAACGAAATTTCTTTTTTTCTAAAAAAAAAA]




>consensus_772#0
AACGTCGNTGGGACANCAAGAACGACCCTCCTATGGGNTGCGNTTCGTTCAACGCTCAGG
GTCATCATCCTTGACCCACCCCGGCCAGGTCGGTGCTGGTTACGCCCCCGTTTTGGACTG
CCACACTGCCCACATCGCCTGCAAGTTNTNTGAGATCCTTGAGAAGCTTGCCGCCGTACC
GGCAAGTCCATCGAGTCCAACCCCAAGTTCATCAAGTCGGGTGACGCTGCCATCGTCAAG
ATGATTCCGTCCAAGCCCATGTGTGTCGAGACTTTCTCCGAGTACCCTCCCCTTGGTCGT
TTCGCCGTCCGTGACATGCGTCAGACCGTCGCTGTCGGTGTCATCAAGAGCGTCGACAAG
TCCCAGGGTACCCAGGGCAAGGTCACCAAGTCCGCTGCCAAGGCCGCCAAGAAATAAGCT
GCTCAACCAACAGCAACATCTAATGTCGAGCCACGACAAGCAGGAAGCATGTCGTAGCAT
CTTGGGCACTTCCTCGTTCGCAACGAGGTTTCGGTCAATTTTGCTTTATCACAAAAGAGT
ACTCGGTTTTTATTGGGGCACATGATGAAATGACGGTTTGGGATTTCGTAACTCAAAAAA
ATTCTTGACATGTGCTTTAGTCTACATAGAGTCCTCAGAAGTGATCTCGGCGTTTGGTCA
TGACTTAAACGAAATTTCTTTTTTTCTAAAAAAAAAA

consensusID : consensus_772#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence

                              [GTTTTGGNNTGCCCCNCTGCCCNCATCGCCTGCAAGTTCTCTGAGATCCTTGAGAAGCTTGACCGCCGTACCGGCAAGTCCATCGAGTCCAACCCCAAGTTCATCAAGTCGGGTGACGCTGCCATCGTCAAGATGATTCCGTCCAAGCCCATGTGTGTCGAGACTTTCTCCGAGTACCCTCCCCTTGGTCGTTTCGCCGTCCGTGACATGCGTCAGACCGTCGCTGTCGGTGTCATCAAGAGCGTCGNCAAGTCCCAGGGTACCCAGGGCAAGGTCCCCAAGTCCGCTGCCAAGGCCGCCAAGAAATAAGCTGCTCAACCNACAGCAACATTTAATGTCGAGCCCCGNCAAGCAGGAAGCATGTCGTAGCATCTTGGGCACTTCCTCGTTCGCAACGAGGTTTCGGTCNATTTTGCTTTATCCCAAAAGAGTACTCGGTTTTTATTGGGGCCCATGATGAAATGACGGTTTGGGATTTCGTAACTCNAAAAAATTCTTGNCCTGTGGAAAAAAAAAAAAAAAAAAA]

[+] EMBL AT003348             [GTTTTGGNNTGCCCCNCTGCCCNCATCGCCTGCAAGTTCTCTGAGATCCTTGAGAAGCTTGACCGCCGTACCGGCAAGTCCATCGAGTCCAACCCCAAGTTCATCAAGTCGGGTGACGCTGCCATCGTCAAGATGATTCCGTCCAAGCCCATGTGTGTCGAGACTTTCTCCGAGTACCCTCCCCTTGGTCGTTTCGCCGTCCGTGACATGCGTCAGACCGTCGCTGTCGGTGTCATCAAGAGCGTCGNCAAGTCCCAGGGTACCCAGGGCAAGGTCCCCAAGTCCGCTGCCAAGGCCGCCAAGAAATAAGCTGCTCAACCNACAGCAACATTTAATGTCGAGCCCCGNCAAGCAGGAAGCATGTCGTAGCATCTTGGGCACTTCCTCGTTCGCAACGAGGTTTCGGTCNATTTTGCTTTATCCCAAAAGAGTACTCGGTTTTTATTGGGGCCCATGATGAAATGACGGTTTGGGATTTCGTAACTCNAAAAAATTCTTGNCCTGTGGAAAAAAAAAAAAAAAAAAA]




>consensus_772#1
GTTTTGGNNTGCCCCNCTGCCCNCATCGCCTGCAAGTTCTCTGAGATCCTTGAGAAGCTT
GACCGCCGTACCGGCAAGTCCATCGAGTCCAACCCCAAGTTCATCAAGTCGGGTGACGCT
GCCATCGTCAAGATGATTCCGTCCAAGCCCATGTGTGTCGAGACTTTCTCCGAGTACCCT
CCCCTTGGTCGTTTCGCCGTCCGTGACATGCGTCAGACCGTCGCTGTCGGTGTCATCAAG
AGCGTCGNCAAGTCCCAGGGTACCCAGGGCAAGGTCCCCAAGTCCGCTGCCAAGGCCGCC
AAGAAATAAGCTGCTCAACCNACAGCAACATTTAATGTCGAGCCCCGNCAAGCAGGAAGC
ATGTCGTAGCATCTTGGGCACTTCCTCGTTCGCAACGAGGTTTCGGTCNATTTTGCTTTA
TCCCAAAAGAGTACTCGGTTTTTATTGGGGCCCATGATGAAATGACGGTTTGGGATTTCG
TAACTCNAAAAAATTCTTGNCCTGTGGAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_772#0      AACGTCGNTGGGACANCAAGAACGACCCTCCTATGGGNTGCGNTTCGTTCAACGCTCAGG 60
consensus_772#1      ------------------------------------------------------------
                                                                                 

consensus_772#0      GTCATCATCCTTGACCCACCCCGGCCAGGTCGGTGCTGGTTACGCCCCCGTTTTGGACTG 120
consensus_772#1      -------------------------------------------------GTTTTGGNNTG 11
                                                                      *******  **

consensus_772#0      CCACACTGCCCACATCGCCTGCAAGTTNTNTGAGATCCTTGAGAAGCTTG-CCGCCGTAC 179
consensus_772#1      CCCCNCTGCCCNCATCGCCTGCAAGTTCTCTGAGATCCTTGAGAAGCTTGACCGCCGTAC 71
                     ** * ****** *************** * ******************** *********

consensus_772#0      CGGCAAGTCCATCGAGTCCAACCCCAAGTTCATCAAGTCGGGTGACGCTGCCATCGTCAA 239
consensus_772#1      CGGCAAGTCCATCGAGTCCAACCCCAAGTTCATCAAGTCGGGTGACGCTGCCATCGTCAA 131
                     ************************************************************

consensus_772#0      GATGATTCCGTCCAAGCCCATGTGTGTCGAGACTTTCTCCGAGTACCCTCCCCTTGGTCG 299
consensus_772#1      GATGATTCCGTCCAAGCCCATGTGTGTCGAGACTTTCTCCGAGTACCCTCCCCTTGGTCG 191
                     ************************************************************

consensus_772#0      TTTCGCCGTCCGTGACATGCGTCAGACCGTCGCTGTCGGTGTCATCAAGAGCGTCGACAA 359
consensus_772#1      TTTCGCCGTCCGTGACATGCGTCAGACCGTCGCTGTCGGTGTCATCAAGAGCGTCGNCAA 251
                     ******************************************************** ***

consensus_772#0      GTCCCAGGGTACCCAGGGCAAGGTCACCAAGTCCGCTGCCAAGGCCGCCAAGAAATAAGC 419
consensus_772#1      GTCCCAGGGTACCCAGGGCAAGGTCCCCAAGTCCGCTGCCAAGGCCGCCAAGAAATAAGC 311
                     ************************* **********************************

consensus_772#0      TGCTCAACCAACAGCAACATCTAATGTCGAGCCACGACAAGCAGGAAGCATGTCGTAGCA 479
consensus_772#1      TGCTCAACCNACAGCAACATTTAATGTCGAGCCCCGNCAAGCAGGAAGCATGTCGTAGCA 371
                     ********* ********** ************ ** ***********************

consensus_772#0      TCTTGGGCACTTCCTCGTTCGCAACGAGGTTTCGGTCAATTTTGCTTTATCACAAAAGAG 539
consensus_772#1      TCTTGGGCACTTCCTCGTTCGCAACGAGGTTTCGGTCNATTTTGCTTTATCCCAAAAGAG 431
                     ************************************* ************* ********

consensus_772#0      TACTCGGTTTTTATTGGGGCACATGATGAAATGACGGTTTGGGATTTCGTAACTCAAAAA 599
consensus_772#1      TACTCGGTTTTTATTGGGGCCCATGATGAAATGACGGTTTGGGATTTCGTAACTCNAAAA 491
                     ******************** ********************************** ****

consensus_772#0      AATTCTTGACATGTGCTTTAGTCTACATAGAGTCCTCAGAAGTGATCTCGGCGTTTGGTC 659
consensus_772#1      AATTCTTGNCCTGTGGAAAAAAAAAAAAAAAAAAA------------------------- 526
                     ******** * ****    *    * * * *                             

consensus_772#0      ATGACTTAAACGAAATTTCTTTTTTTCTAAAAAAAAAA 697
consensus_772#1      --------------------------------------