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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7724#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1377 fasta sequence
[GACTCCGACCGCCCGGCGCGCGCGCTGCTCCGGTCGTCCGCCGCGTACGTCGCGCTGTCCGCGGCGCTCCGGTCGGGGGGCGGCGCCGACGACCCGGCCTGCCACTGGCTCTACGATACGCTGCTGTCCCCGGACCCCGACCTCCGCCTCGCCGCGCTCGCGTTCCTCCCGCTCCTCTCGTCGCTCTACCTCCTCCGCCTGCCGCCCGCGCTCCCCTCCTCGCTCTCCGGCTTCGAGGCCGTCCTCCTCGCCGTCTACTCCTCCGAGGCCAAGAATCGCCAGGGCAAGCCCGTCCTTGTCCAGGTACCCGACCTCTCCGTCCCTTCCCTCTACCACACGCCGCTGTCCAGCCCCAGCTCGAAGTCCCCTCGCCGGCCACAGCCGCCGCCGATCCCCCCACCCGCGGGGAATGTTGTGGTCGGGGTGCTATCGCCGCCGCTTGAGCCACAGGCGGCGGTGAAGTCGACCAAGCGCGCGGGGATTATCGGAGTTGCCTTCGAGGCGTACTATGCCAAGATTTCGCAGATGCCGCCTGCATCGAAGGTGGATGCTTGCAACGCCGTGGCGGCGTGGGCGGGGCAGTACTGCAAGTGCCGATTTGAGCTTGATGAGAAGGAGTTGGAAGAGGAGGAGGCTGATTCATTGGGGTCCGTTTCGCCATTGTCATCGGAGGCCGAGAACGGGAAGGCCTTGGAGGAGGAAATGGCAAAGATGCGCGTCAACGGAGACACCAATGGTCGGAATTGTGGCGAGAGAGAGGGGAGGGTGCCACTTCCATGGGAGCTTCTACAGCCAGTGATGAGAGTTCTTGGTCACTGCCTGTTAGCTCCGCTGAATCCGACGGAGGTGCGGGATACCGCCGCAGAAGCTGTGCGGGTTGTCTATGCCCGCGCGTGTCATGAGCTTGTGCCACAGGCTATCTTGGCGTCCCGTAGCTTGATCGAGCTCGACAAAAGCGCACGCAAGGCTGCCAAGGAGGCAGCTGCAGCAGCTTCTGGGGCAATCGTGTCAGTAGGCACAGCTGGTAGCACCGCGTCGAGCTCTAGACCCAGCTCCAAGCCAAACACACCAGGCAAGCAGCGGAAGCCTGATGTACTGCTCCTGTCAAAATGATTCTGATTGCATTACATCTTGTAAGATTTTCTGCAGTGGTGATAAAAGAGTTCATTTTTCTCATGAGTTTGTCACTGGAATTTCATTGAAGTCTACTAAACCTTGCAATGCGTAAAGGTCGACTCTTGTGGCTTGGAAAAGCATTGGTTTAGTATGTAGCCAGTTCTGTATTGTAAGTTATCTTGTCTTATGTTATTGTTTTTGCATATAGCTGATGAATTAATATATTTCACATTTATGTGTGCGGTTGATGAAAAAAAGAAA]
[+] EMBL CB653492 [GACTCCGACCGCCCGGCGCGCGCGCTGCTCCGGTCGTCCGCCGCGTACGTCGCGCTGTCCGCGGCGCTCCGGTCGGGGGGCGGCGCCGACGACCCGGCCTGCCACTGGCTCTACGATACGCTGCTGTCCCCGGACCCCGACCTCCGCCTCGCCGCGCTCGCGTTCCTCCCGCTCCTCTCGTCGCTCTACCTCCTCCGCCTGCCGCCCGCGCTCCCCTCCTCGCTCTCCGGCTTCGAGGCCGTCCTCCTCGCCGTCTACTCCTCCGAGGCCAAGAATCGCCAGGGCAAGCCCGTCCTTGTCCAGGTACCCGACCTCTCCGTCCCTTCCCTCTACCACACGCCGCTGTCCAGCCCCAGCTCGAAGTCCCCTCGCCGGCCACAGCCGCCGCCGATCCCCCCACCCGCGGGGAATGTTGTGGTCGGGGTGCTATCGCCGCCGCTTGAGCCACAGGCGGCGGTGAAGTCGACCAAGCGCGCGGGGATTATCGGAGTTGCCTTCGAGGCGTACTATGCCAAGATTTCGCAGATGCCGCCTGCATCGAAGGTGGATGCTTGCAACGCCGTGGCGGCGTGGGCGGGGCAGTACTGCAAGTGCCGATTTGAGCTTGATGAGAAGGAGTTGGAAGAGGAGGAGGCTGATTCATTGGGGTCCGTTTCGCCATTGTCATCGGAGGCCGAGAACGGGAAGGCCTTGGAGGAGGAAATGGCAAAGATGCGCGTCAACGGAGACACCAATGGTCGGAATTGTGGCGAGAGAGAGGGGAGGGTGCCACTTCCATGGGAG ]
[-] EMBL CB675977 [ GCCGATTTGAGCTTGATGAGAAGGAGTTGGAAGAGGAGGAGGCTGATTCATTGGGGTCCGTTTCGCCATTGTCATCGGAGGCCGAGAACGGGAAGGCCTTGGAGGAGGAAATGGCAAAGATGCGCGTCAACGGAGACACCAATGGTCGGAATTGTGGCGAGAGAGAGGGGAGGGTGCCACTTCCATGGGAGCTTCTACAGCCAGTGATGAGAGTTCTTGGTCACTGCCTGTTAGCTCCGCTGAATCCGACGGAGGTGCGGGATACCGCCGCAGAAGCTGTGCGGGTTGTCTATGCCCGCGCGTGTCATGAGCTTGTGCCACAGGCTATCTTGGCGTCCCGTAGCTTGATCGAGCTCGACAAAAGCGCACGCAAGGCTGCCAAGGAGGCAGCTGCAGCAGCTTCTGGGGCAATCGTGTCAGTAGGCACAGCTGGTAGCACCGCGTCGAGCTCTAGACCCAGCTCCAAGCCAAACACACCAGGCAAGCAGCGGAAGCCTGATGTACTGCTCCTGTCAAAATGATTCTGATTGCATTACATCTTGTAAGATTTTCTGCAGTGGTGATAAAAGAGTTCATTTTTCTCATGAGTTTGTCACTGGAATTTCATTGAAGTCTACTAAACCTTGCAATGCGTAAAGGTCGACTCTTGTGGCTTGGAAAAGCATTGGTTTAGTATGTAGCCAGTTCTGTATTGTAAGTTATCTTGTCTTATGTTATTGTTTTTGCATATAGCTGATGAATTAATATATTTCACATTTATGTGTGCGGTTGA ]
[-] EMBL CA762468 [ ggaCGAGACA AGGGGAGGGTGCCACTTCCATGGGAGCTTCTACAGCCAGTGATGAGAGTTCTTGGTCACTGCCTGTTAGCTCCGCTGAATCCGACGGAGGTGCGGGATACCGCCGCAGAAGCTGTGCGGGTTGTCTATGCCCGCGCGTGTCATGAGCTTGTGCCACAGGCTATCTTGGCATCCCGTAGCTTGATCGAGCTCGACAAAAGCGCACGCAAGGCTGCCAAGGAGGCAGCTGCAGCAGCTTCTGGGGCAATCGTGTCAGTAGGCACAGCTGGTAGCACCGCGTCGAGCTCTAGACCCAGCTCCAAGCCAAACACACCAGGCAAGCAGCGGAAGCCTGATGTACTGCTCCTGTCGAAATGATTCTGATTGCATTACATCTTGTAAGATTTTCTGCAGTGGTGATAAAAGAGTTCATTTTTCTCATGAGTTTGTCACTGGAATTTCATTGAAGTCTACTAAACCTTGCAATGCGTAAAGGTCGACTCTTGTGGCTTGGAAAAGCATTGGTTTAGTATGTAGCCAGTTCTGTATTGTAAGTTATCTTGTCTTATGTTATTGTTTTTGCATATAGCTGATGAATTAATATATTTCACATTTATGTGTGCGGTTGATGAAAAAAAGAAA]
consensusID : consensus_7724#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence
[AGGGGTGCCACTTCCATGGGAGCTTCTACAGCCAGTGATGAGAGTTCTTGGTCCCTGCCTGTAGCCTCCGCTGAATCCGACGGAGGTGCGGGATACCGCCGCAGAAGCTGTGCGGGTTGTCTATGCCCGCGCGTGTCATGAGCTTGTGCCACAGGCTATCTTGGCGTCCCGTAGCTTGATCGAGCTCGACAAAAGCGCACGCAAGGCTGCCAAGGAGGCAGCTGCAGCAGCTTCTGGGGCAATCGTGTCAGTAGGCACAGCTGGTAGCACCGCGTCGAGCTCTAGACCCAGCTCCAAGCCAAACACACCAGTGGTGATAAAAGAGTTCATTTTTCTCATGAGTTTGTCACTGGAATTTCATTGAAGTCTACTAAACCTTGCAATGCGTAAAGGTCGACTCTTGTGGCTTGGAAAAGCATTGGTTTAGTATGTAGCCAGTTCTGTATTGTAAGTTATCTTGTCTTATGTTATTGTTTTTGCATATAGCTGATGAATTAATATATTTCACATTTATGTGTGCGGTTGATGAAAAGAACATGGTGTAGTGTGCTATCTACTACTAGTAATGGATTTTAGCAGGCGATTATGTATTGACTTGTTTTATGCATTTCTTACCGAACATATATTAATTTGATGTTCCTTACTACAACTACTATCTTATGGAATTCTCAGCAAAAAAAA]
[-] EMBL CA762469 [AGGGGTGCCACTTCCATGGGAGCTTCTACAGCCAGTGATGAGAGTTCTTGGTCCCTGCCTGTAGCCTCCGCTGAATCCGACGGAGGTGCGGGATACCGCCGCAGAAGCTGTGCGGGTTGTCTATGCCCGCGCGTGTCATGAGCTTGTGCCACAGGCTATCTTGGCGTCCCGTAGCTTGATCGAGCTCGACAAAAGCGCACGCAAGGCTGCCAAGGAGGCAGCTGCAGCAGCTTCTGGGGCAATCGTGTCAGTAGGCACAGCTGGTAGCACCGCGTCGAGCTCTAGACCCAGCTCCAAGCCAAACACACCAGTGGTGATAAAAGAGTTCATTTTTCTCATGAGTTTGTCACTGGAATTTCATTGAAGTCTACTAAACCTTGCAATGCGTAAAGGTCGACTCTTGTGGCTTGGAAAAGCATTGGTTTAGTATGTAGCCAGTTCTGTATTGTAAGTTATCTTGTCTTATGTTATTGTTTTTGCATATAGCTGATGAATTAATATATTTCACATTTATGTGTGCGGTTGATGAAAAGAACATGGTGTAGTGTGCTATCTACTACTAGTAATGGATTTTAGCAGGCGATTATGTATTGACTTGTTTTATGCATTTCTTACCGAACATATATTAATTTGATGTTCCTTACTACAACTACTATCTTATGGAATTCTCAGCAAAAAAAA]
consensusID : consensus_7724#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence
[CGTGCTCTCTGCTTCTTGACCTAGATCGCTCCATCCTGCCCGCCTCCTTTACATGGCGGCTTCCCCAACCACTGAATAGGGTATTTGGTCCCCACCCCGGTACCTCCCGCTACTTCCGACGAGGTACTGGGATCCCCCCGCAGAAGATGTACGGGTTGTCTATGCCCGCGCGTGTCATGAGCTTGTCCCACAGGCTATCTTTGCATCCCGTAGCTCGATCGAGCTTGACAAAAGCGCACGCAAGCGTGCCAAGGAGGCAGCTGCAGCAGCTTCTGGGGCAATCGTGTCAGTAGGCACAGCTGGTAGCTCCGCGTCGAGCTCTAGATTCAGCTCCGAGCCAAACACACCAGGCAAGCACCGGAAGCCGGATGTCCTGCTCCTGTTGAAATCATTCTGAAGGCATTACATCTTGTAAGATTTTCTGCAGTGGTGATAAAAGAGTTCATTTTTCTCATGAGTTCGTCACTGGAATTTCATTGGAGTCTACTAAACCTTGCAATGGGTAAAGGTCGACTCTTGTGGCTTGGAAAAGCATTGGTTTAGTATGTAGCCAGTTCTGTATTGTAAGTTATCATGTCTTATGTTATTGTTTTTGCATATAGCTGATGAATTAATATATTTCCCCATTATGTGTGCGGTTGATGAAAAAAAAAAA]
[-] EMBL CA762467 [CGTGCTCTCTGCTTCTTGACCTAGATCGCTCCATCCTGCCCGCCTCCTTTACATGGCGGCTTCCCCAACCACTGAATAGGGTATTTGGTCCCCACCCCGGTACCTCCCGCTACTTCCGACGAGGTACTGGGATCCCCCCGCAGAAGATGTACGGGTTGTCTATGCCCGCGCGTGTCATGAGCTTGTCCCACAGGCTATCTTTGCATCCCGTAGCTCGATCGAGCTTGACAAAAGCGCACGCAAGCGTGCCAAGGAGGCAGCTGCAGCAGCTTCTGGGGCAATCGTGTCAGTAGGCACAGCTGGTAGCTCCGCGTCGAGCTCTAGATTCAGCTCCGAGCCAAACACACCAGGCAAGCACCGGAAGCCGGATGTCCTGCTCCTGTTGAAATCATTCTGAAGGCATTACATCTTGTAAGATTTTCTGCAGTGGTGATAAAAGAGTTCATTTTTCTCATGAGTTCGTCACTGGAATTTCATTGGAGTCTACTAAACCTTGCAATGGGTAAAGGTCGACTCTTGTGGCTTGGAAAAGCATTGGTTTAGTATGTAGCCAGTTCTGTATTGTAAGTTATCATGTCTTATGTTATTGTTTTTGCATATAGCTGATGAATTAATATATTTCCCCATTATGTGTGCGGTTGATGAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7724#0 GACTCCGACCGCCCGGCGCGCGCGCTGCTCCGGTCGTCCGCCGCGTACGTCGCGCTGTCC 60
consensus_7724#2 ------------------------------------------------------------
consensus_7724#1 ------------------------------------------------------------
consensus_7724#0 GCGGCGCTCCGGTCGGGGGGCGGCGCCGACGACCCGGCCTGCCACTGGCTCTACGATACG 120
consensus_7724#2 ------------------------------------------------------------
consensus_7724#1 ------------------------------------------------------------
consensus_7724#0 CTGCTGTCCCCGGACCCCGACCTCCGCCTCGCCGCGCTCGCGTTCCTCCCGCTCCTCTCG 180
consensus_7724#2 ------------------------------------------------------------
consensus_7724#1 ------------------------------------------------------------
consensus_7724#0 TCGCTCTACCTCCTCCGCCTGCCGCCCGCGCTCCCCTCCTCGCTCTCCGGCTTCGAGGCC 240
consensus_7724#2 ------------------------------------------------------------
consensus_7724#1 ------------------------------------------------------------
consensus_7724#0 GTCCTCCTCGCCGTCTACTCCTCCGAGGCCAAGAATCGCCAGGGCAAGCCCGTCCTTGTC 300
consensus_7724#2 ------------------------------------------------------------
consensus_7724#1 ------------------------------------------------------------
consensus_7724#0 CAGGTACCCGACCTCTCCGTCCCTTCCCTCTACCACACGCCGCTGTCCAGCCCCAGCTCG 360
consensus_7724#2 ------------------------------------------------------------
consensus_7724#1 ------------------------------------------------------------
consensus_7724#0 AAGTCCCCTCGCCGGCCACAGCCGCCGCCGATCCCCCCACCCGCGGGGAATGTTGTGGTC 420
consensus_7724#2 ------------------------------------------------------------
consensus_7724#1 ------------------------------------------------------------
consensus_7724#0 GGGGTGCTATCGCCGCCGCTTGAGCCACAGGCGGCGGTGAAGTCGACCAAGCGCGCGGGG 480
consensus_7724#2 ------------------------------------------------------------
consensus_7724#1 ------------------------------------------------------------
consensus_7724#0 ATTATCGGAGTTGCCTTCGAGGCGTACTATGCCAAGATTTCGCAGATGCCGCCTGCATCG 540
consensus_7724#2 ------------------------------------------------------------
consensus_7724#1 ------------------------------------------------------------
consensus_7724#0 AAGGTGGATGCTTGCAACGCCGTGGCGGCGTGGGCGGGGCAGTACTGCAAGTGCCGATTT 600
consensus_7724#2 ------------------------------------------------------------
consensus_7724#1 ------------------------------------------------------------
consensus_7724#0 GAGCTTGATGAGAAGGAGTTGGAAGAGGAGGAGGCTGATTCATTGGGGTCCGTTTCGCCA 660
consensus_7724#2 ------------------------------------------------------------
consensus_7724#1 ------------------------------------------------------------
consensus_7724#0 TTGTCATCGGAGGCCGAGAACGGGAAGGCCTTGGAGGAGGAAATGGCAAAGATGCGCGTC 720
consensus_7724#2 ------------------------------------------------------------
consensus_7724#1 ------------------------------------------------------------
consensus_7724#0 AACGGAGACACCAATGGTCGGAATTGTGGCGAGAGAGAGGGGAGGGTGCCACTTCCATGG 780
consensus_7724#2 --CGTGCTCTCTGCTTCTTG-ACCTAGATCGCTCCATCCTGCCCGCCTCC-TTTACATGG 56
consensus_7724#1 -----------------------------------------AGGGGTGCCACTTCCATGG 19
* ** ** *****
consensus_7724#0 GAGCTTCTACAGCCAGTGATGAGAGTTCTTGGTCACTGCCT-GTTAGCTCC-GCTGAATC 838
consensus_7724#2 CGGCTTCCCCAACCACTGAATAGGGTATTTGGTCCCCACCCCGGTACCTCCCGCTACTTC 116
consensus_7724#1 GAGCTTCTACAGCCAGTGATGAGAGTTCTTGGTCCCTGCCT--GTAGCCTCCGCTGAATC 77
***** ** *** *** ** ** ****** * ** ** * * *** **
consensus_7724#0 CGACGGAGGTGCGGGATACCGCCGCAGAAGCTGTGCGGGTTGTCTATGCCCGCGCGTGTC 898
consensus_7724#2 CGACGAGGTACTGGGATCCCCCCGCAGAAGATGTACGGGTTGTCTATGCCCGCGCGTGTC 176
consensus_7724#1 CGACGGAGGTGCGGGATACCGCCGCAGAAGCTGTGCGGGTTGTCTATGCCCGCGCGTGTC 137
***** * ***** ** ********* *** *************************
consensus_7724#0 ATGAGCTTGTGCCACAGGCTATCTTGGCGTCCCGTAGCTTGATCGAGCTCGACAAAAGCG 958
consensus_7724#2 ATGAGCTTGTCCCACAGGCTATCTTTGCATCCCGTAGCTCGATCGAGCTTGACAAAAGCG 236
consensus_7724#1 ATGAGCTTGTGCCACAGGCTATCTTGGCGTCCCGTAGCTTGATCGAGCTCGACAAAAGCG 197
********** ************** ** ********** ********* **********
consensus_7724#0 CACGCAAGGCTGCCAAGGAGGCAGCTGCAGCAGCTTCTGGGGCAATCGTGTCAGTAGGCA 1018
consensus_7724#2 CACGCAAGCGTGCCAAGGAGGCAGCTGCAGCAGCTTCTGGGGCAATCGTGTCAGTAGGCA 296
consensus_7724#1 CACGCAAGGCTGCCAAGGAGGCAGCTGCAGCAGCTTCTGGGGCAATCGTGTCAGTAGGCA 257
******** **************************************************
consensus_7724#0 CAGCTGGTAGCACCGCGTCGAGCTCTAGACCCAGCTCCAAGCCAAACACACCAGGCAAGC 1078
consensus_7724#2 CAGCTGGTAGCTCCGCGTCGAGCTCTAGATTCAGCTCCGAGCCAAACACACCAGGCAAGC 356
consensus_7724#1 CAGCTGGTAGCACCGCGTCGAGCTCTAGACCCAGCTCCAAGCCAAACACACCAG------ 311
*********** ***************** ******* ***************
consensus_7724#0 AGCGGAAGCCTGATGTACTGCTCCTGTCAAAATGATTCTGATTGCATTACATCTTGTAAG 1138
consensus_7724#2 ACCGGAAGCCGGATGTCCTGCTCCTGTTGAAATCATTCTGAAGGCATTACATCTTGTAAG 416
consensus_7724#1 ------------------------------------------------------------
consensus_7724#0 ATTTTCTGCAGTGGTGATAAAAGAGTTCATTTTTCTCATGAGTTTGTCACTGGAATTTCA 1198
consensus_7724#2 ATTTTCTGCAGTGGTGATAAAAGAGTTCATTTTTCTCATGAGTTCGTCACTGGAATTTCA 476
consensus_7724#1 -----------TGGTGATAAAAGAGTTCATTTTTCTCATGAGTTTGTCACTGGAATTTCA 360
********************************* ***************
consensus_7724#0 TTGAAGTCTACTAAACCTTGCAATGCGTAAAGGTCGACTCTTGTGGCTTGGAAAAGCATT 1258
consensus_7724#2 TTGGAGTCTACTAAACCTTGCAATGGGTAAAGGTCGACTCTTGTGGCTTGGAAAAGCATT 536
consensus_7724#1 TTGAAGTCTACTAAACCTTGCAATGCGTAAAGGTCGACTCTTGTGGCTTGGAAAAGCATT 420
*** ********************* **********************************
consensus_7724#0 GGTTTAGTATGTAGCCAGTTCTGTATTGTAAGTTATCTTGTCTTATGTTATTGTTTTTGC 1318
consensus_7724#2 GGTTTAGTATGTAGCCAGTTCTGTATTGTAAGTTATCATGTCTTATGTTATTGTTTTTGC 596
consensus_7724#1 GGTTTAGTATGTAGCCAGTTCTGTATTGTAAGTTATCTTGTCTTATGTTATTGTTTTTGC 480
************************************* **********************
consensus_7724#0 ATATAGCTGATGAATTAATATATTTCACATTTATGTGTGCGGTTGATGAAAAAAAGAAA- 1377
consensus_7724#2 ATATAGCTGATGAATTAATATATTTCCCCATTATGTGTGCGGTTGATGAAAAAAAAAAA- 655
consensus_7724#1 ATATAGCTGATGAATTAATATATTTCACATTTATGTGTGCGGTTGATGAAAAGAACATGG 540
************************** * ********************** ** *
consensus_7724#0 ------------------------------------------------------------
consensus_7724#2 ------------------------------------------------------------
consensus_7724#1 TGTAGTGTGCTATCTACTACTAGTAATGGATTTTAGCAGGCGATTATGTATTGACTTGTT 600
consensus_7724#0 ------------------------------------------------------------
consensus_7724#2 ------------------------------------------------------------
consensus_7724#1 TTATGCATTTCTTACCGAACATATATTAATTTGATGTTCCTTACTACAACTACTATCTTA 660
consensus_7724#0 ---------------------
consensus_7724#2 ---------------------
consensus_7724#1 TGGAATTCTCAGCAAAAAAAA 681
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||