These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7725#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 452 fasta sequence [TCTAAAAACTCATACCCAAGTCGACCTTTCAATCAGATACTGAGTTGAGCCATACTGAAATCCAGCAACCGGATTGCCGGTGTTTTCGCCAATTGCCAGGAGGCATTGCAATTTGCACTCTAGATCCCCATCACCCGATGCTTGTCGGGGTCATGGCCTCCCTGCCGCACCCCCGGGGACCACCTGAATCCTCGACCTCCCAGAGAAGGGACCCACAAGTCGACGGCATCTCGCTCTTGCCGCTAGATTCAAAGTGTACAGGCTGCTGGCCATATATATAGTAGCTTGGCCTGTGTTAACTTCTCACTGGAAACATCCATACAACACTTCCTCATCACAAAACACACATGAACACCGGAGAGTGGAGCAACCGGTGAGCCTCCGGCCGGAGGAGGCAGTCCAGTCAACAGCTGCAGGGGAGGCCAAGATGGACAAGAGCGTCCTGATGATGT] [+] EMBL CB620063 [TCTAAAAACTCATACCCAAGTCGACCTTTCAATCAGATACTGAGTTGAGCCATACTGAAATCCAGCAACCGGATTGCCGGTGTTTTCGCCAATTGCCAGGAGGCATTGCAATTTGCACTCTAGATCCCCATCACCCGATGCTTGTCGGGGTCATGGCCTCCCTGCCGCACCCCCGGGGACCACCTGAATCCTCGACCTCCCAGAGAAGGGACCCACAAGTCGACGGCATCTCGCTCTTGCCGCTAGATTCAAAGTGTACAGGCTGCTGGCCATATATATAGTAGCTTGGCCTGTGTTAACTTCTCACTGGAAACATCCATACAACACTTCCTCATCACAAAACACACATGAACACCGGAGAGTGGAGCAACCGGTGAGCCTCCGGCCGGAGGAGGCAGTCCAGTCAACAGCTGCAGGGGAGGCCAAGATGGACAAGAGCGTCCTGATGATGT] [+] EMBL CB619949 [TCTAAAAACTCATACCCAAGTCGACCTTTCAATCAGATACTGAGTTGAGCCATACTGAAATCCAGCAACCGGATTGCCGGTGTTTTCGCCAATTGCCAGGAGGCATTGCAATTTGCACTCTAGATCCCCATCACCCGATGCTTGTCGGGGTCATGGCCTCCCTGCCGCACCCCCGGGGACCACCTGAATCCTCGACCTCCCAGAGAAGGGACCCACAAGTCGACGGCATCTCGCTCTTGCCGCTAGATTCAAAGTGTACAGGCTGCTGGCCATATATATAGTAGCTTGGCCTGTGTTAACTTCTCACTGGAAACATCCATACAACACTTCCTCATCACAAAACACACATGAACACCGGAGAGTGGAGCAACCGGTGAGCCTCCGGCCGGAGGAGGCAGTCCAGTCAACAGCTGCAGGGGAGGCCAAGATGGACAAGAGCGTCCTGATGna ] consensusID : consensus_7725#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 423 fasta sequence [TTTTTACTAAGATGTATCATATTTAATACGAGTATATACCGGTAACAGGTAGCAACAAAACAGACGGTCACACTTTTTCACAGAGGTAAACATACCATCTCGCTCTTGCCGCTAGATTCAAAGTGTACAGGCTGCTGGCCATATATATAGTAGCTTGGCCTGTGTTAACTTCTCACTGGAAACATCCATACAACACTTCCTCATCACAAAACACACATGAACACCGGAGAGTGGAGCAACCGGTGAGCCTCCGGCCGGAGGAGGCAGTCCAGTCAACAGCTGCAGGGGAGGCCAAGATGGACAAGAGCGTCCTGATGATGTTGANGGNGGCGGCGGCGGTGATCCTCCTGTGGCTCCCATTGGTGTTGCCGNCGCTANCGCCGCCGCCGCCATTCTTGCTCTTCATCCCCGTCGTGATGATGC] [-] EMBL AU075970 [TTTTTACTAAGATGTATCATATTTAATACGAGTATATACCGGTAACAGGTAGCAACAAAACAGACGGTCACACTTTTTCACAGAGGTAAACATACCATCTCGCTCTTGCCGCTAGATTCAAAGTGTACAGGCTGCTGGCCATATATATAGTAGCTTGGCCTGTGTTAACTTCTCACTGGAAACATCCATACAACACTTCCTCATCACAAAACACACATGAACACCGGAGAGTGGAGCAACCGGTGAGCCTCCGGCCGGA GAGGCAGTCCAGTCAACAGCTGCAGGGGAGGCCAAGATGGACAAGAGCGTCCTGATGATGTTGANGGNGGCGGCGGCGGTGATCCTCCTGTGGCTCCCATTGGTGTTGCCGNCGCTANCGCCGCCGCCGCCATTCTTGCTCTTCATCCCCGTCGTGATGATGC] [+] EMBL CB634636 [ TATCATATTTAATACGAGTATATACCGGTAACAGGTAGCAACAAAACAGACGGTCACACTTTTTCACAGAGGTAAACATACCATCTCGCTCTTGCCGCTAGATTCAAAGTGTACAGGCTGCTGGCCATATATATAGTAGCTTGGCCTGGGTTAACTTCTCACTGGAAACATCCATACAACACTTCCTCATCACAAAACACACATGAACACCGGAGAGTGGAGCAACCGGTGAGCCTCCGGCCGGAGGAGGCAGTCCAGTCAACAGCTGCAGGGGAGGCCAAGATGGACAAGAGCGTCC ] [+] EMBL CB647625 [ TTCACAGAGGTAAACATACCATCTCGCTCTTGCCGCTAGATTCAAAGTGTACAGGCTGCTGGCCATATATATAGTAGCTTGGCCTGTGTTAACTTCTCACTGGAAACATCCATACAACACTTCCTCATCACAAAACACACATGAACACCGGAGAGTGGAGCAACCGGTGAGCCTCCGGCCGGAGGAGGCAGTCCAGTCAACAGCTGCAGGGGAGGCCAAGATGGACAAGAGCGTCCTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7725#0 TCTAAAAACTCATACCCAAGTCGACCTTTCAATCAGATACTGAGTTGAGCCATACTGAAA 60 consensus_7725#1 ------------------------------------------------------------ consensus_7725#0 TCCAGCAACCGGATTGCCGGTGTTTTCGCCAATTGCCAGGAGGCATTGCAATTTGCACTC 120 consensus_7725#1 ---------------------------------------------------TTTTTACTA 9 *** *** consensus_7725#0 TAGATCCCCATCACCCGATGCTTGTCGGGGTCATGGCCTCCCTGCCGCACCCCCGGGGAC 180 consensus_7725#1 -AGATGTATCATATTTAATACGAGTATATACCGGTAACAGGTAGCAACAAAACAGACGGT 68 **** * ** * ** * * ** ** * * * consensus_7725#0 CACCTGAATCCTCGACCTCCCAGAGAAGGGACCCACAAGTCGACGGCATCTCGCTCTTGC 240 consensus_7725#1 CACAC----------TTTTTCACAGAGGTAAAC---------ATACCATCTCGCTCTTGC 109 *** * ** *** * * * * ************** consensus_7725#0 CGCTAGATTCAAAGTGTACAGGCTGCTGGCCATATATATAGTAGCTTGGCCTGTGTTAAC 300 consensus_7725#1 CGCTAGATTCAAAGTGTACAGGCTGCTGGCCATATATATAGTAGCTTGGCCTGTGTTAAC 169 ************************************************************ consensus_7725#0 TTCTCACTGGAAACATCCATACAACACTTCCTCATCACAAAACACACATGAACACCGGAG 360 consensus_7725#1 TTCTCACTGGAAACATCCATACAACACTTCCTCATCACAAAACACACATGAACACCGGAG 229 ************************************************************ consensus_7725#0 AGTGGAGCAACCGGTGAGCCTCCGGCCGGAGGAGGCAGTCCAGTCAACAGCTGCAGGGGA 420 consensus_7725#1 AGTGGAGCAACCGGTGAGCCTCCGGCCGGAGGAGGCAGTCCAGTCAACAGCTGCAGGGGA 289 ************************************************************ consensus_7725#0 GGCCAAGATGGACAAGAGCGTCCTGATGATGT---------------------------- 452 consensus_7725#1 GGCCAAGATGGACAAGAGCGTCCTGATGATGTTGANGGNGGCGGCGGCGGTGATCCTCCT 349 ******************************** consensus_7725#0 ------------------------------------------------------------ consensus_7725#1 GTGGCTCCCATTGGTGTTGCCGNCGCTANCGCCGCCGCCGCCATTCTTGCTCTTCATCCC 409 consensus_7725#0 -------------- consensus_7725#1 CGTCGTGATGATGC 423 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||