These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7731#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1418 fasta sequence [AAATGCTTGTCTTGTTAAAACTTTTGAACATGCCTGTGGATAATTTGTAATTCTGTTAAAATGCATGAAGAATAAAGATGTGAGGCAGGGAGAAAATGTGTGCTGAAGGCATTTAAGATGTCTATTGAGTTTTGATGGAACACTCTGATCTGTGAATCTCTTTCCCTAGGAAGGTTTTGGAACATCAGATACATATTGCGCATATCTTATTATCTTATCTGCAGATGTATAATGTATTTCAGCTGAAGCATTTCATTTACCATACTTTAACTTATCTAGGATTCTAGGATACTATGATATAAAATTTTGGTTAGTGCGAACTTGTCTTCTGCTTATGTCAGCATTATAGGCCTATAGGATTCTATACTTGGCACTTCGGCAATATCCATATACTCTGCATCCTTATATGCTGTCAGTAGACATTGCCATAACAACCCCTCTTTAGCCCGGCAGATAACAAATTCTCTTTACTGTGTGCTCCTTTAGGTTGGGATATATCTGCCCTCATACGATCTATTGCGCAATTGGATTGAAGAATATTCAGATCATAGTTTTCCTAAACTGAGACCATATGCTCCTCTTATTGCTGGCTCTGTTGCCCGATCATTGGCATGCATAACTTGTTCCCCTATTGAGTTGGCAAGAACACGGATGCAGTTCGGTCATACCACCTTCTATGGACTGGTCTTGGAGCACAACTTGCACGTGACGTCCCCTTCTCAGCTATATGCTGGACAGTTCTTGAACCAACTAGAAGGCATCTGATAAGAATAGTTGGCGAGCAAAGCAATGCAGCTGTTATATTGGGGGCAAACTTCTCCGCAGGCTTCATTGCTGGAGTTATCTCTGCTGGTGCTACCTGTCCTCTCGATGTTGCCAAGACACGCAGACAAATAGAGAAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAGTATGGAGTAAGGAAGGCATCAGCGGGATATTCAGAGGTGCAGGTCCTCGAATGGCACGGGCAGGGCCTTCAGTGGGCATCGTCGTCTCGTCATATGAAGTTGTGAAGCACATCATGCACCGGAAACACGCAGAGTTATGACCTGATTTTAACTCTTCAAACGTAGAATTCAACTGCAGCTGAGGCTTTTAACCATTATTTTTTCTAGTTTACCCTACACGGACTAGATCGCTTTAGTGAAAGCCGGTTTTTATTCTCTATCTATATGCCTTGCCTACCTTATCAGGAAGGTGAGGCCGAGTGTGTCCCTTCTAATAAAAGGGCAGAATGCCCTAGATGTGAACATTCCTTGTTACAAGAATTCATTGATCCATTCTCCCTGTCTGCTAAAAGTGAGTTTGGGTTGAAAGATAAAAAAAATAATGAACACGAACTCTCCAAGCAGACTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK064461 [AAATGCTTGTCTTGTTAAAACTTTTGAACATGCCTGTGGATAATTTGTAATTCTGTTAAAATGCATGAAGAATAAAGATGTGAGGCAGGGAGAAAATGTGTGCTGAAGGCATTTAAGATGTCTATTGAGTTTTGATGGAACACTCTGATCTGTGAATCTCTTTCCCTAGGAAGGTTTTGGAACATCAGATACATATTGCGCATATCTTATTATCTTATCTGCAGATGTATAATGTATTTCAGCTGAAGCATTTCATTTACCATACTTTAACTTATCTAGGATTCTAGGATACTATGATATAAAATTTTGGTTAGTGCGAACTTGTCTTCTGCTTATGTCAGCATTATAGGCCTATAGGATTCTATACTTGGCACTTCGGCAATATCCATATACTCTGCATCCTTATATGCTGTCAGTAGACATTGCCATAACAACCCCTCTTTAGCCCGGCAGATAACAAATTCTCTTTACTGTGTGCTCCTTTAGGTTGGGATATATCTGCCCTCATACGATCTATTGCGCAATTGGATTGAAGAATATTCAGATCATAGTTTTCCTAAACTGAGACCATATGCTCCTCTTATTGCTGGCTCTGTTGCCCGATCATTGGCATGCATAACTTGTTCCCCTATTGAGTTGGCAAGAACACGGATGCAGTTCGGTCATACCACCTTCTATGGACTGGTCTTGGAGCACAACTTGCACGTGACGTCCCCTTCTCAGCTATATGCTGGACAGTTCTTGAACCAACTAGAAGGCATCTGATAAGAATAGTTGGCGAGCAAAGCAATGCAGCTGTTATATTGGGGGCAAACTTCTCCGCAGGCTTCATTGCTGGAGTTATCTCTGCTGGTGCTACCTGTCCTCTCGATGTTGCCAAGACACGCAGACAAATAGAGAAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAGTATGGAGTAAGGAAGGCATCAGCGGGATATTCAGAGGTGCAGGTCCTCGAATGGCACGGGCAGGGCCTTCAGTGGGCATCGTCGTCTCGTCATATGAAGTTGTGAAGCACATCATGCACCGGAAACACGCAGAGTTATGACCTGATTTTAACTCTTCAAACGTAGAATTCAACTGCAGCTGAGGCTTTTAACCATTATTTTTTCTAGTTTACCCTACACGGACTAGATCGCTTTAGTGAAAGCCGGTTTTTATTCTCTATCTATATGCCTTGCCTACCTTATCAGGAAGGTGAGGCCGAGTGTGTCCCTTCTAATAAAAGGGCAGAATGCCCTAGATGTGAACATTCCTTGTTACAAGAATTCATTGATCCATTCTCCCTGTCTGCTAAAAGTGAGTTTGGGTTGAAAGATAAAAAAAAT ] [-] EMBL CF325430 [ GACACGCAGACAAATAGAGAAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAGTATGGAGTAAGGAAGGCATCAGCGGGATATTCAGAGGTGCAGGTCCTCGAATGGCACGGGCAGGGCCTTCAGTGGGCATCGTCGTCTCGTCATATGAAGTTGTGAAGCACATCATGCACCGGAAACACGCAGAGTTATGACCTGATTTTAACTCTTCAAACGTAGAATTCAACTGCAGCTGAGGCTTTTAACCATTATTTTTTCTAGTTTACCCTACACGGACTAGATCGCTTTAGTGAAAGCCGGTTTTTATTCTCTATCTATATGCCTTGCCTACCTTATCAGGAAGGTGAGGCCGAGTGTGTCCCTTCTAATAAAAGGGCAGAATGCCCTAGATGTGAACATTCCTTGTTACAAGAATTCATTGATCCATTCTCCCTGTCTGCTAAAAGTGAGTTTGGGTTGAAAGATAAAAAAAATAATGAACACGAACTCTCCAAGCAGACTAAAAAAAAAAAAAAAAAAAA] [-] EMBL C74480 [ CACAAGGCGCAT TTGCATGAAGTATGGAGTAAGGAAGGCATCAGCGGNATATTCAGAGGTGCAGGTCCTCGANTGGCACGGGCAGGGCCTTCAGTGGGCATCGTCGTCTCGTCATATGAAGTTGTNAAGCACATCATGCACCGGAAACACGCAGAGTTATGACCTGATTTTAACTCTTCAAACGTAGAATTCAACTGCAGCTGAGGCTTTTAACCATTATTTTTTCTAGTTTACCCTACACGGACTAGATCGCTTTAGTGAAAGCCGGTTTTTATTCTCTATCTATATGCCTTGCCTACCTTATCAGGAAGGTGAGGCCGAGTGTGTCCCTTCTAATAAAAGGGCAGAATGCCCTAGATGTGAACATTCCTTGTTACAAGAATTCATTGATC ] consensusID : consensus_7731#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1189 fasta sequence [CTCGTCAACCCGCTCGACGTCGCCAAGACAAGGTTACAAGCACANGCGGCCGGAGTTGTCTATAATCCGATATGGTCAGATTTTAGGTGCTATCCGTGGTGCAACCCTGGAATGAATGGTTTAGGGCCATCATGCAGTTCTGAATGCTTCCAATACAGAGGGACAATGGATGTGTTTTATAAGGTCACTAAACAGGAAGGAGTTTTTAGACTATGGAGAGGTACTGCTGCAACCTAGCATTGGCAGTGCCAACGGTTGGGATATATCTGCCCTCATACGATCTATTGCGCAATTGGATTGAAGAATATTCAGATCATAGTTTTCCTAAACTGAGACCATATGCTCCTCTTATTGCTGGCTCTGTTGCCCGATCATTGGCATGCATAACTTGTTCCCCTATTGAGTTGGCAAGAACACGGATGCAGGCCTTTAAAGTATCAAATGTTGGAGGAAAACCCCCTGGAATGTGGAAGAC-TTTGCTTGGTGTGCTTGCATTGAGACAGAGCATCAATCATCCTGAAAATATTCGGTCATACCACCTTCTATGGACTGGTCTTGGAGCACAACTTGCACGTGACGTCCCCTTCTCAGCTATATGCTGGACAGTTCTTGAACCAACTAGAAGGCATCTGATAAGAATAGTTGGCGAGCAAAGCAATGCAGCTGTTATATTGGGGGCAAACTTCTCCGCAGGCTTCATTGCTGGAGTTATCTCTGCTGGTGCTACCTGTCCTCTCGATGTTGCCAAGACACGCAGACAAATAGAGAAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAGTATGGAGTAAGGAAGGCATCAGCGGGATATTCAGAGGTGCAGGTCCTCGAATGGCACGGGCAGGGCCTTCAGTGGGCATCGTCGTCTCGTCATATGAAGTTGTGAAGCACATCATGCACCGGAAACACGCAGAGTTATGACCTGATTTTAACTCTTCAAACGTAGAATTCAACTGCAGCTGAGGCTTTTAACCATTATTTTTTCTAGTTTACCCTACACGGACTAGATCGCTTTAGTGAAAGCCGGTTTTTATTCTCTATCTATAGGCCTTGCCTACCTTATCAGGAAGGTGAGGCCGAGTGTGTCCCTTCTAATAAAAGGGCAGAATGCCCTAGAAGGGAACATTCCTTGTTACAAGAATTCATTGATC] [-] EMBL AU083484 [CTCGTCAACCCGCTCGACGTCGCCAAGACAAGGTTACAAGCACANGCGGCCGGAGTTGTCTATAATCCGATATGGTCAGATTTTAGGTGCTATCCGTGGTGCAACCCTGGAATGAATGGTTTAGGGCCATCATGCAGTTCTGAATGCTTCCAATACAGAGGGACAATGGATGTGTTTTATAAGGTCACTAAACAGGAAGGAGTTTTTAGACTATGGAGAGGTACTGCTGCAACCTAGCATTGGCAGTGCCAACGGTTGGGATATATCTGCCCTCATACGATCTATTGCGCAATTGGATTGAAGAATATTCAGATCATAGTTTTCCTAAACTGAGACCATATGCTCCTCTTATTGCTGGCTCTGTTGCCCGATCATTGGCATGCATAACTTGTTCCCCTATTGAGTTGGCAAGAACACGGATGCAGGCCTTTAAAGTATCAAATGTTGGAGGAAAACCCCCTGGAATGTGGAAGAC TTTGCTTGGTGTGCTTGCATTGAGACAGAGCATCAATCATCCTGAAAATATTCGGTCATACCA ] [-] EMBL CB651728 [ AATGTGGAAGACTTTTGCTTGGTGTGCTTGCATTGAGACAGAGCATCAATCATCCTGAAAATATTCGGTCATACCACCTTCTATGGACTGGTCTTGGAGCACAACTTGCACGTGACGTCCCCTTCTCAGCTATATGCTGGACAGTTCTTGAACCAACTAGAAGGCATCTGATAAGAATAGTTGGCGAGCAAAGCAATGCAGCTGTTATATTGGGGGCAAACTTCTCCGCAGGCTTCATTGCTGGAGTTATCTCTGCTGGTGCTACCTGTCCTCTCGATGTTGCCAAGACACGCAGACAAATAGAGAAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAGTATGGAGTAAGGAAGGCATCAGCGGGATATTCAGAGGTGCAGGTCCTCGAATGGCACGGGCAGGGCCTTCAGTGGGCATCGTCGTCTCGTCATATGAAGTTGTGAAGCACATCATGCACCGGAAACACGCAGAGTTATGACCTGATTTTAACTCTTCAAACGTAGAATTCAACTGCAGCTGAGGCTTTTAACCATTATTTTTTCTAGTTTACCCTACACGGACTAGATCGCTTTAGTGAAAGCCGGTTTTTATTCTCTATCTATAGGCCTTGCCTACCTTATCAGGAAGGTGAGGCCGAGTGTGTCCCTTCTAATAAAAGGGCAGAATGCCCTAGAAGGGAACATTCCTTGTTACAAGAATTCATTGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7731#0 AAATGCTTGTCTTGTTAAAACTTTTGAACATGCCTGTGGATAATTTGTAATTCTGTTAAA 60 consensus_7731#1 ---------------------------------------------------CTCGTCAAC 9 ** ** consensus_7731#0 ATGCATGAAGAATAAAGATGTGAGGCAGGGAGAAAATGTGTGCTGAAGGCATTTAAGATG 120 consensus_7731#1 CCGCTCGACGT-CGCCAAGACAAGGTTACAAGCACANGCG-GCCGGAGTTGTCTATAAT- 66 ** ** * * *** ** * * * * ** * ** * ** ** consensus_7731#0 TCTATTGAGTTTTGATGGAACACTCTGATCTGTGAATCTCTTTCCCTAGGAAGGTTTTGG 180 consensus_7731#1 -CCGATATGGTCAGATTTTAGGTGCT-ATCCGTGGTGCAACCCTGGAATGAATGGTTTAG 124 * * * * *** * ** *** *** * * *** * *** * consensus_7731#0 AACATCAGATACATATTGCGCATATCTTATTATCTTATCTGCAGATGTATAATGTATTTC 240 consensus_7731#1 GGC----------CATCATGCAGTTCTGAATGCTTCCAATACAGAGGGACAATGGAT--- 171 * ** *** *** * * * * **** * * **** ** consensus_7731#0 AGCTGAAGCATTTCATTTACCATACTTTAACTTATCTAGGATTCTAGGATACTATGATAT 300 consensus_7731#1 -------GTGTTTTAT--AAGGTCACTAAACAGGAAGGAGTTTTTAGACTATGGAGAGGT 222 * *** ** * * * *** * ** *** ** ** * consensus_7731#0 AAAATTTTGGTTAGTGCGAACTTGTCTTCTGCTTATGTCAGCATTATAGGCCTATAGGAT 360 consensus_7731#1 A---------CTGCTGCAACCTAGCAT--TGGCAGTGCCAACGGT---------TGGGAT 262 * * *** * ** * * ** ** ** * * * **** consensus_7731#0 TCTATACTTGGCACTTCGGCAATATCCATATACTCTGCATCCTTATATGCTGTCAGTAGA 420 consensus_7731#1 ---ATATCTGCC------------CTCATACGATCTATTGCGCAATTGG--ATTGAAGAA 305 *** ** * **** *** * ** * * * consensus_7731#0 CATTGCCATAACAACCCCTCTTTAGCCCGGCAGATAACAAATTCTCTTTACTGTGTGCTC 480 consensus_7731#1 TATT--CAGATCATAGTTTTCCTAAACTG--AGACCATATGCTCCTCTTATTGCTGGCTC 361 *** ** * ** * ** * * *** * * ** *** ** **** consensus_7731#0 CTTTAGGTTGGGATATATCTGCCCTCATACGATCTATTGCGCAATTGGATTGAAGAATAT 540 consensus_7731#1 TGTTGCCC---GAT-CATTGGCATGCATA--ACTTGTTCCCCTATTGAGTTGGCAAGAAC 415 ** *** ** ** **** * * ** * * **** *** * * consensus_7731#0 TCAGATCATAGTTTTCCTAAACTGAGACCATATGCTCCTCTTATTGCTGGCTCTGTTGCC 600 consensus_7731#1 ACGGATGCAGGCCTT--TAAAGT---ATCAAATG-TTGGAGGAAAACCCCCTGGAATGTG 469 * *** * ** **** * * ** *** * * * ** ** consensus_7731#0 CGATCATTGGCATGCATAACTTGTTCCCCTATTGAGTTGGCAAGAACACGGATGCAGTTC 660 consensus_7731#1 GAAGACTTTGCTTGGTGTGCTTGCATTGAGACAGAGC-ATCAATCATCCTGAAAATATTC 528 * ** ** ** **** * *** *** * * ** *** consensus_7731#0 GGTCATACCACCTTCTATGGACTGGTCTTGGAGCACAACTTGCACGTGACGTCCCCTTCT 720 consensus_7731#1 GGTCATACCACCTTCTATGGACTGGTCTTGGAGCACAACTTGCACGTGACGTCCCCTTCT 588 ************************************************************ consensus_7731#0 CAGCTATATGCTGGACAGTTCTTGAACCAACTAGAAGGCATCTGATAAGAATAGTTGGCG 780 consensus_7731#1 CAGCTATATGCTGGACAGTTCTTGAACCAACTAGAAGGCATCTGATAAGAATAGTTGGCG 648 ************************************************************ consensus_7731#0 AGCAAAGCAATGCAGCTGTTATATTGGGGGCAAACTTCTCCGCAGGCTTCATTGCTGGAG 840 consensus_7731#1 AGCAAAGCAATGCAGCTGTTATATTGGGGGCAAACTTCTCCGCAGGCTTCATTGCTGGAG 708 ************************************************************ consensus_7731#0 TTATCTCTGCTGGTGCTACCTGTCCTCTCGATGTTGCCAAGACACGCAGACAAATAGAGA 900 consensus_7731#1 TTATCTCTGCTGGTGCTACCTGTCCTCTCGATGTTGCCAAGACACGCAGACAAATAGAGA 768 ************************************************************ consensus_7731#0 AGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAGTATGGAGTA 960 consensus_7731#1 AGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAGTATGGAGTA 828 ************************************************************ consensus_7731#0 AGGAAGGCATCAGCGGGATATTCAGAGGTGCAGGTCCTCGAATGGCACGGGCAGGGCCTT 1020 consensus_7731#1 AGGAAGGCATCAGCGGGATATTCAGAGGTGCAGGTCCTCGAATGGCACGGGCAGGGCCTT 888 ************************************************************ consensus_7731#0 CAGTGGGCATCGTCGTCTCGTCATATGAAGTTGTGAAGCACATCATGCACCGGAAACACG 1080 consensus_7731#1 CAGTGGGCATCGTCGTCTCGTCATATGAAGTTGTGAAGCACATCATGCACCGGAAACACG 948 ************************************************************ consensus_7731#0 CAGAGTTATGACCTGATTTTAACTCTTCAAACGTAGAATTCAACTGCAGCTGAGGCTTTT 1140 consensus_7731#1 CAGAGTTATGACCTGATTTTAACTCTTCAAACGTAGAATTCAACTGCAGCTGAGGCTTTT 1008 ************************************************************ consensus_7731#0 AACCATTATTTTTTCTAGTTTACCCTACACGGACTAGATCGCTTTAGTGAAAGCCGGTTT 1200 consensus_7731#1 AACCATTATTTTTTCTAGTTTACCCTACACGGACTAGATCGCTTTAGTGAAAGCCGGTTT 1068 ************************************************************ consensus_7731#0 TTATTCTCTATCTATATGCCTTGCCTACCTTATCAGGAAGGTGAGGCCGAGTGTGTCCCT 1260 consensus_7731#1 TTATTCTCTATCTATAGGCCTTGCCTACCTTATCAGGAAGGTGAGGCCGAGTGTGTCCCT 1128 **************** ******************************************* consensus_7731#0 TCTAATAAAAGGGCAGAATGCCCTAGATGTGAACATTCCTTGTTACAAGAATTCATTGAT 1320 consensus_7731#1 TCTAATAAAAGGGCAGAATGCCCTAGAAGGGAACATTCCTTGTTACAAGAATTCATTGAT 1188 *************************** * ****************************** consensus_7731#0 CCATTCTCCCTGTCTGCTAAAAGTGAGTTTGGGTTGAAAGATAAAAAAAATAATGAACAC 1380 consensus_7731#1 C----------------------------------------------------------- 1189 * consensus_7731#0 GAACTCTCCAAGCAGACTAAAAAAAAAAAAAAAAAAAA 1418 consensus_7731#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||