cluster # 7732

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Oryza sativa
cluster # 7732 cluster # 7732 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7732#0 length = 727 sequences # 4

consensus_7732#1 length = 423 sequences # 1

consensusID : consensus_7732#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 727
fasta sequence

                              [TTTTTTTTTACTATAAAAGAGGAATAGCCGTTTTTACTTTATNTCTGGAATTAA-TTTAAACAGTACAATAACTTACTTTTCTCATACAATAGTTGAAAATGTAAAA-TGTAGTTG-TGTATGTGATCGAGGTAAAAGTTG-GTTG-CCTCTGTTCGATCAAATAATGNTCAGGATAAACTGTATGGAGTATAAAATAATGGAAGTAATCGTCAGACGTCCATATCCAGCACAAGAGGGGTGTCCCCCTTCTCCACGGTGAACGTC-TGTGCATCTTCCCCGTCGCCGTCGCGAGCTGCACGACGTACGTGCCGTGGAAGCCCCTGAACTTGAA-GTGGCCGTCGCCGTCGATGTGGCCGCGCGCGTGCGACGTCCACTCCCGCCGGAGATCTATGAACCTCTCGCCGGCGTCGTTGACGGTGCCGTCGGAGTTGACGAGGCAGGCGTCCTGGCGCCACATGTGGCCCTGCATGAAACCCCAGAACATGACGCCCTCGACGGCCGGGTGCGCGTACGCCTCCCGGAGCACCACCTCGAGGTCGTCGGCGCGGAGGTCGACGTCAGACTCGCAGACGTCGAGCTCGGTGAGCCAGACGGGGAGGTCGGTGGTGGCGAGCTTGTCGAGCGCGTCGCAGATGACCTCCCCGACGGGGTTGGTGACGTGGCCCTGGAGGCCGATGCCGCCGACGGCCGCGCCCTTCTGCTGCAGCGCGGTGATCTGCTCGATGTACTT]

[-] EMBL BI805418             [TTTTTTTTTACTATAAAAGAGGAATAGCCGTTTTTACTTTATNTCTGGAATTAA TTTAAACAGTACAATAACTTACTTTTCTCATACAATAGTTGAAAATGTAAAA TGTAGTTG TGTATGTGATCGAGGTAAAAGTTG GTTG CCTCTGTTCGATCAAATAATGNTCAGGATAAACTGTATGGAGTATAAAATAATGGAAGTAATCGTCAGACGTCCATATCCAGCACAAGAGGGGTGTCCCCCTTCTCCACGGTGAACGTC TGTGCATCTTCCCCGTCGCCGTCGCGAGCTGCACGACGTACGTGCCGTGGAAGCCCCTGAACTTGAAGGTGG CGTCGCCGTCGATGTGG CG GCGCGTGCGA GTCCACTCCCGGCGGAGATCTATGAACCTCTCGCCGG GTCGTTGACGGTG CG CGGAGTTGACGAGGGAGGGGTCCTGG                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB647598             [                                 TTACTTTATTTCT TAATTAACTTTAACCAGTACAATACCTTACTTTTCTCATACAATAGTTGAAAATGTAAAATTGTAGTTGTTGTATGTGATCGAGGTAAAAGTTGCTTTGCCCTCTGTTCGATCAAATAATCATCAGTATAAACTGTATGGAGTATAAAATAATGGAAGTAATCGTCAGACGTCCATATCCAGCACAAGAGGGGTGTCCCCCTTCTCCACGGTGAACGTCTTGTGCATCTTCCCCGTCGCCGTCGCGAGCTGCACGACGTACGTGCCGTGGAAGCCCCTGAACTTGAA GTGGCCGTCGCCGTCGATGTGGCCGCGCGCGTGCGACGTCCACTCCCGCCGGAGATCTATGAACCTCTCGCCGGCGTCGTTGACGGTGCCGTCGGAGTTGACGAGGCAGGCGTCCTGGCGCCACATGTGGCCCTGCATGAAACCCCAGAACATGACGCCCTCGACGGCCGGGTGCGCGTACGCCTCCCGGAGCACCACCTCGAGGTCGTCGGCGCGGAGGTCGACGTCAGACTCGCAGACGTCGAGCTCGGTGAGCCAGACGGGGAGGTCGGTGGTGGCGAGCTTGTCGAGCGCGTCGCAGATGACCTCCCCGACGGGGTTGGTGACGTGGCCCTGGAGGCCGATGCCGCCGACGGCCGCGCCCTTCTGCTGCAGCGCGGTGATCTGCTCGATGTACTT]
[-] EMBL AU184194             [                                                                                                                                                                                                                                                                                                                                       ACTTGAA GTGGCCGTCNCCGTCGATGTGNCCGCGCGCGTGCGACGTCCACCTCCGCCGGAGATCTATGAACCTCTCGCCGGCGTCGTTGACGGTGCCGTCGGAGTTGACGAGGCAGGCGTCCTGGCGCCACATGTGGCCCTGCATGAAACCCCAGAACATGACGCCCTCGACGGCCGGGTGCGCGTACGCCTCCCGGAGCACCACCTCGAGGTCGTCGGCGCGGAGGTCGACGTCAGACTCGCAGACGTCGAGCTCGGTGAGCCAGACGGGGAGGTCGGTGGTGGCGAGCTTGTCGAGCGCGTCGCAGATGACCTCCCCGACGGGGTTGGTGACGTGGCCCTGGAGGCCGATGCCGC                                                 ]
[-] EMBL AU173493             [                                                                                                                                                                                                                                                                                                                                                                                            CCGCCGGAGATCTATGAACCTCTCGCCGGCGTCGTTGACGGTGCCGTCGGAGTTGACGAGGCAGGCGTCCTGGCGCCACATGTGGCCCTGCATGAAACCCCAGAACATGACGCCCTCGACGGCCGGGTGCGCGTACGCCTCCCGGAGCACCACCTCGAGGTCGTCGGCGCGGAGGTCGACGTCAGACTCGCAGACGTCGAGCTCGGTGAGCCAGACGGGGAGGTCGGTGGTGGCGAGCTTGTCGAGCGCGTCGCAGATGACCTCCCCGACGGGGTTGGTGACGTGGCCCTGGAGGCCGATGCCGC                                                 ]




>consensus_7732#0
TTTTTTTTTACTATAAAAGAGGAATAGCCGTTTTTACTTTATNTCTGGAATTAATTTAAA
CAGTACAATAACTTACTTTTCTCATACAATAGTTGAAAATGTAAAATGTAGTTGTGTATG
TGATCGAGGTAAAAGTTGGTTGCCTCTGTTCGATCAAATAATGNTCAGGATAAACTGTAT
GGAGTATAAAATAATGGAAGTAATCGTCAGACGTCCATATCCAGCACAAGAGGGGTGTCC
CCCTTCTCCACGGTGAACGTCTGTGCATCTTCCCCGTCGCCGTCGCGAGCTGCACGACGT
ACGTGCCGTGGAAGCCCCTGAACTTGAAGTGGCCGTCGCCGTCGATGTGGCCGCGCGCGT
GCGACGTCCACTCCCGCCGGAGATCTATGAACCTCTCGCCGGCGTCGTTGACGGTGCCGT
CGGAGTTGACGAGGCAGGCGTCCTGGCGCCACATGTGGCCCTGCATGAAACCCCAGAACA
TGACGCCCTCGACGGCCGGGTGCGCGTACGCCTCCCGGAGCACCACCTCGAGGTCGTCGG
CGCGGAGGTCGACGTCAGACTCGCAGACGTCGAGCTCGGTGAGCCAGACGGGGAGGTCGG
TGGTGGCGAGCTTGTCGAGCGCGTCGCAGATGACCTCCCCGACGGGGTTGGTGACGTGGC
CCTGGAGGCCGATGCCGCCGACGGCCGCGCCCTTCTGCTGCAGCGCGGTGATCTGCTCGA
TGTACTT

consensusID : consensus_7732#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence

                              [TTTTTTTTACTATAAAACGAGGAATAGCCCCGNTTTTACTTTATTTCTTAATTAACTTTAACCAAGGACAATACCCTTACTTTTNTTANACCATAAGTTGNAAANGGAAAANTGGAANTTGGTTGGANGGAAATCGNAGGNAAAGGTTGGTTTTGCCCTCTGGTTCGATCAAATAATCATCAGTATAAACTGTATGGGAGTATAAAATAATGGGAAGTAATCGTCAGACGTCCATATCCAGCACAAGAGGGGTGTCCCCCTTCTCCACGGTGAACGTCTTGTGCATCTTCCCCGTCGCCGTCGCGAGCTGCACGACGTACGTGCCGTGGAAGCCCCTGAACTTGAAGTGGCCGTCGCCGNCGATGTGGCCGCGCGCGTGCGACGTCCACTCCCGCCGGAGATCTATGAACCTCTCGCCGGCGT]

[-] EMBL AU173494             [TTTTTTTTACTATAAAACGAGGAATAGCCCCGNTTTTACTTTATTTCTTAATTAACTTTAACCAAGGACAATACCCTTACTTTTNTTANACCATAAGTTGNAAANGGAAAANTGGAANTTGGTTGGANGGAAATCGNAGGNAAAGGTTGGTTTTGCCCTCTGGTTCGATCAAATAATCATCAGTATAAACTGTATGGGAGTATAAAATAATGGGAAGTAATCGTCAGACGTCCATATCCAGCACAAGAGGGGTGTCCCCCTTCTCCACGGTGAACGTCTTGTGCATCTTCCCCGTCGCCGTCGCGAGCTGCACGACGTACGTGCCGTGGAAGCCCCTGAACTTGAAGTGGCCGTCGCCGNCGATGTGGCCGCGCGCGTGCGACGTCCACTCCCGCCGGAGATCTATGAACCTCTCGCCGGCGT]




>consensus_7732#1
TTTTTTTTACTATAAAACGAGGAATAGCCCCGNTTTTACTTTATTTCTTAATTAACTTTA
ACCAAGGACAATACCCTTACTTTTNTTANACCATAAGTTGNAAANGGAAAANTGGAANTT
GGTTGGANGGAAATCGNAGGNAAAGGTTGGTTTTGCCCTCTGGTTCGATCAAATAATCAT
CAGTATAAACTGTATGGGAGTATAAAATAATGGGAAGTAATCGTCAGACGTCCATATCCA
GCACAAGAGGGGTGTCCCCCTTCTCCACGGTGAACGTCTTGTGCATCTTCCCCGTCGCCG
TCGCGAGCTGCACGACGTACGTGCCGTGGAAGCCCCTGAACTTGAAGTGGCCGTCGCCGN
CGATGTGGCCGCGCGCGTGCGACGTCCACTCCCGCCGGAGATCTATGAACCTCTCGCCGG
CGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7732#0      TTTTTTTTTACTATAAAA-GAGGAATAGCC--GTTTTTACTTTATNTCTGGAATTAATTT 57
consensus_7732#1      -TTTTTTTTACTATAAAACGAGGAATAGCCCCGNTTTTACTTTATTTCTTAATTAACTTT 59
                       ***************** ***********  * *********** ***  * * * ***

consensus_7732#0      AAACA-GTACAATAAC-TTACTTTTCTCATACAATA-GTTGAAAATGTAAAAT--GTAGT 112
consensus_7732#1      AACCAAGGACAATACCCTTACTTTTNTTANACCATAAGTTGNAAANGGAAAANTGGAANT 119
                      ** ** * ****** * ******** * * ** *** **** *** * ****   * * *

consensus_7732#0      TG--TGTATGTGATC--GAGGTAAAAGTTGGTTG---CCTCTG-TTCGATCAAATAATGN 164
consensus_7732#1      TGGTTGGANGGAAATCGNAGGNAAAGGTTGGTTTTGCCCTCTGGTTCGATCAAATAATCA 179
                      **  ** * *  *     *** *** *******    ****** **************  

consensus_7732#0      TCAGGATAAACTGTATGG-AGTATAAAATAATGG-AAGTAATCGTCAGACGTCCATATCC 222
consensus_7732#1      TCAGTATAAACTGTATGGGAGTATAAAATAATGGGAAGTAATCGTCAGACGTCCATATCC 239
                      **** ************* *************** *************************

consensus_7732#0      AGCACAAGAGGGGTGTCCCCCTTCTCCACGGTGAACGTCT-GTGCATCTTCCCCGTCGCC 281
consensus_7732#1      AGCACAAGAGGGGTGTCCCCCTTCTCCACGGTGAACGTCTTGTGCATCTTCCCCGTCGCC 299
                      **************************************** *******************

consensus_7732#0      GTCGCGAGCTGCACGACGTACGTGCCGTGGAAGCCCCTGAACTTGAAGTGGCCGTCGCCG 341
consensus_7732#1      GTCGCGAGCTGCACGACGTACGTGCCGTGGAAGCCCCTGAACTTGAAGTGGCCGTCGCCG 359
                      ************************************************************

consensus_7732#0      TCGATGTGGCCGCGCGCGTGCGACGTCCACTCCCGCCGGAGATCTATGAACCTCTCGCCG 401
consensus_7732#1      NCGATGTGGCCGCGCGCGTGCGACGTCCACTCCCGCCGGAGATCTATGAACCTCTCGCCG 419
                       ***********************************************************

consensus_7732#0      GCGTCGTTGACGGTGCCGTCGGAGTTGACGAGGCAGGCGTCCTGGCGCCACATGTGGCCC 461
consensus_7732#1      GCGT-------------------------------------------------------- 423
                      ****                                                        

consensus_7732#0      TGCATGAAACCCCAGAACATGACGCCCTCGACGGCCGGGTGCGCGTACGCCTCCCGGAGC 521
consensus_7732#1      ------------------------------------------------------------
                                                                                  

consensus_7732#0      ACCACCTCGAGGTCGTCGGCGCGGAGGTCGACGTCAGACTCGCAGACGTCGAGCTCGGTG 581
consensus_7732#1      ------------------------------------------------------------
                                                                                  

consensus_7732#0      AGCCAGACGGGGAGGTCGGTGGTGGCGAGCTTGTCGAGCGCGTCGCAGATGACCTCCCCG 641
consensus_7732#1      ------------------------------------------------------------
                                                                                  

consensus_7732#0      ACGGGGTTGGTGACGTGGCCCTGGAGGCCGATGCCGCCGACGGCCGCGCCCTTCTGCTGC 701
consensus_7732#1      ------------------------------------------------------------
                                                                                  

consensus_7732#0      AGCGCGGTGATCTGCTCGATGTACTT 727
consensus_7732#1      --------------------------