These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7734#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1075 fasta sequence [CTGTCGGGGAAGAGCCGAAGAGGGTGAGGAAAGGATGGCTTCCCCCTTGCGACGACTGCGATCATGGCGGGTTTCTCGCGGCGCCACCTCGCCGTGTTCTACGTCGGCGGCGTCAATGGCAGCGGCCAGGACAACCAACACCCTCCACCGCCTTCTACCCCTTGCCCGCGCCGTCCACTCGTCGCTGCCGCCGAGCAGGTACGGCGATCCCCGTTCGCCTCCGCAGGCCCGTCGTCCCAGCGGCGAAGTTGAGCTCTCTAAACTGGAAAAGACGCCCTCTGACCGTTTCGACGAGATCGAAGCTGCCATTCATGCCAATCTCGTCAACGACATTGAGGCCTACAAATCAAGCCTTATGGCAGACCATGGTTTCTTTGAAAGAATGCTTACCTCTATGGGGATAAAAAAGAGTTACACTCGTGACCAAACTCTATGGTTGTGCAAGCTGATTCTCATCTTCTTTGCCTCAGGGTCTGTTGGGATTGGATTTGCCAAGATCGATGACCGTCTGAAACAGGCTCCATCAAATGCTTTATAACTGA-GCAACAAACATGT-CTGTTGTTTGGCCTGCTTAAAATTAAGCTGTTGATCACCTCGCAACCTATTCTGCATTTATCGGCCTGCCCTCGACGAGGTTGAACTCGATTTATCAGTGCTGTAGATTGTCTGCTGGGATGGTGTACGTGTGCACGGGCGTCTGCTCGATGTGGAAACCGATGGTGGCCGTTCAGAGCTTGGCGAGGGCGGTGAGGGCATTGGAGCATGTAGGCCGGAGAGGATGAGGTGAGACAGCGGCGCTGGATCCATGGTGGGTAACAAGAGGCACCAGCGACAACCTGGGCAGCCTTGCACCGTTGTGCTTCAGAGCTCCATCAGGAACTATTTCTTTTACTCATAGTAAATCTTTTGTTTTTGTTTAGGGCAGTCAAGTCGGGCTTTTTTATGTTTGTGTTTAGATAATTGAACATCTACTTTGACCGACATTACTACTGCAGTATTGCAGCTTATTACCAGATCATGCTCACGGGTTAAATTTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGC] [+] EMBL AK068043 [CTGTCGGGGAAGAGCCGAAGAGGGTGAGGAAAGGATGGCTTCCCCCTTGCGACGACTGCGATCATGGCGGGTTTCTCGCGGCGCCACCTCGCCGTGTTCTACGTCGGCGGCGTCAATGGCAGCGGCCAGGACAACCAACACCCTCCACCGCCTTCTACCCCTTGCCCGCGCCGTCCACTCGTCGCTGCCGCCGAGCAGGTACGGCGATCCCCGTTCGCCTCCGCAGGCCCGTCGTCCCAGCGGCGAAGTTGAGCTCTCTAAACTGGAAAAGACGCCCTCTGACCGTTTCGACGAGATCGAAGCTGCCATTCATGCCAATCTCGTCAACGACATTGAGGCCTACAAATCAAGCCTTATGGCAGACCATGGTTTCTTTGAAAGAATGCTTACCTCTATGGGGATAAAAAAGAGTTACACTCGTGACCAAACTCTATGGTTGTGCAAGCTGATTCTCATCTTCTTTGCCTCAGGGTCTGTTGGGATTGGATTTGCCAAGATCGATGACCGTCTGAAACAGGCTCCATCAAATGCTTTATAACTGA GCAACAAACATGT CTGTTGTTTGGCCTGCTTAAAATTAAGCTGTTGATCACCTCGCAACCTATTCTGCATTTATCGGCCTGCCCTCGACGAGGTTGAACTCGATTTATCAGTGCTGTAGATTGTCTGCTGGGATGGTGTACGTGTGCACGGGCGTCTGCTCGGTGTGGAAACCGATGGTGGCCGTTCAGAGCTTGGCGAGGGCGGTGAGGGCATTGGAGCATGTAGGCCGGAGAGGATGAGGTGAGACAGCGGCGCTGGATCCATGGTGGGTAACAAGAGGCACCAGCGACAACCTGGGCAGCCTTGCACCGTTGTGCTTCAGAGCTCCATCAGGAACTATTTCTTTTACTCATAGTAAATCTTTTGTTTTTGTTTAGGGCAGTCAAGTCGGGCTTTTTTATGTTTGTGTTTAGATAATTGAACATCTACTTTGACCGACATTACTACTGCAGTATTGCAGCTTATTACCAGATCATGCTCACGGGTTAAAT ] [+] EMBL CF333661 [ TGAGGAAAGGATGGCTTCCCCCTTGCGACGACTGCGATCATGGCGGGTTTCTCGCGGCGCCACCTCGCCGTGTTCTACGTCGGCGGCGTCAATGGCAGCGGCCAGGACAACCAACACCCTCCACCGCCTTCTACCCCTTGCCCGCGCCGTCCACTCGTCGCTGCCGCCGAGCAGGTACGGCGATCCCCGTTCGCCTCCGCAGGCCCGTCGTCCCAGCGGCGAAGTTGAGCTCTCTAAACTGGAAAAGACGCCCTCTGACCGTTTCGACGAGATCGAAGCTGCCATTCATGCCAATCTCGTCAACGACATTGAGGCCTACAAATCAAGCCTTATGGCAGACCATGGTTTCTTTGAAAGAATGCTTACCTCTATGGGGATAAAAAAGAGTTACACTCGTGACCAAACTCTATGGTTGTGCAAGCTGATTCTCATCTTCTTTGCCTCAGGGTCTGTTGGGATTGGATTTGCCAAGATCGATGACCGTCTG AACAGGCTC ] [-] EMBL CF333660 [ TTACACTCGTGACCAAACTCTATGG TGTGCAAGCTGATTCTCATCTTCTTTGCCTCAGGGTCTGTTGGGATTGGATTTGCCAAGATCGATGACCGTCTGAAACAGGCTCCATCAAATGCTTTATAACTGACGCAACAAACATGTNCTGTTGTTTGGCCTGCTTAAAATTAAGCTGTTGATCACCTCGCAACCTATTCTGCATTTATCGGCCTGCCCTCGACGAGGTTGAACTCGATTTATCAGTGCTGTAGATTGTCTGCTGGGATGGTGTACGTGTGCACGGGCGTCTGCTCGATGTGGAAACCGATGGTGGCCGTTCAGAGCTTGGCGAGGGCGGTGAGGGCATTGGAGCATGTAGGCCGGAGAGGATGAGGTGAGACAGCGGCGCTGGATCCATGGTGGGTAACAAGAGGCACCAGCGACAACCTGGGCAGCCTTGCACCGTTGTGCTTCAGAGCTCCATCAGGAACTATTTCTTTTACTCATAGTAAATCTTTTGTTTTTGTTTAGGGCAGTCAAGTCGGGCTTTTTTATGTTTGTGTTTAGATAATTGAACATCTACTTTGACCGACATTACTACTGCAGTATTGCAGCTTATTACCAaaaaa ] [-] EMBL CF325347 [ CTGCTTAAAATTAAGCTGTTGATCACCTCGCAACCTATTCTGCATTTATCGGCCTGCCCTCGACGAGGTTGAACTCGATTTATCAGTGCTGTAGATTGTCTGCTGGGATGGTGTACGTGTGCACGGGCGTCTGCTCGATGTGGAAACCGATGGTGGCCGTTCAAAGCTTGGCGAGGGCGGTGAGGGCATTGGAGCATGTAGGCCGGAAAGGATGAGGTGAGACAGCGGCGCTGGATCCATGGTGGGTAACAAGAGGCACCAGCGACAACCTGGGCAGCCTTGCACCGTTGTGCTTCAGAGCTCCATCAGGAACTATTTCTTTTACTCATAGTAAATCTTTTGTTTTTGTTTAGGGCAGTCAAGTCGGGCTTTTTTATGTTTGTGTTTAGATAATTGAACATCTACTTTGACCGACATTACTACTGCAGTATTGCAGCTTATTACCAGATCATGCTCACGGGTTAAATTTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGC] consensusID : consensus_7734#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [GAGACCGAAGANGGTGAGGAAAGGATGGCTTCCCCCTTGCGACGACTGCGATCATGGCGGGTTTCTCGCGGCGCCACCTCGCCGTGTTCTACGTCGGCGGCGTCAATGGCAGCGGCCANGACAACCANCACCCTCCACCGCCTTCTACCCCTTGCCCGCGCCGTCCACTCGTCNCTGCCGCCGANCAGGTNCGGCGATCCCCGTTCGCCTCCGCAGGNCCGTCGTCCCANCGGCGAANTTGAGCTCTCTAAACTGGAAAAGACCCCTCTGACCGTTTCGACGANATCGAANCTGCCATTCNTGCCAATCTCGTCNACGACATTGAGGCCTACAAATCAAGCCTTATGGCAGACCATGGTTTCTTTGAAAGAATGCTTACCTCTATGGGGATAAAAAAGANTTACACTCNTGACCAAACTCTATGGTTGTGCNAGCTGATTCTCATCTTCTTTGCCTCANGGTCTGTTGGGATTGGATTTGCCCANATCNATGAACGTCTGAAACAGGCTCCATCNAATGCTTTATAACTGANCAACCAACATGTNTGTTGTTTGGCCTGCTTAAAATTAAACTGTTGATCCCTCNCCACCTATCTGCNTTTATCGGCCTGCCCCCAACAAAGTTGAACTCCATTTATCCNTTGCTGTTNANTTGTCTGCCNGGGATTGGTTTACTTTTTTCNCNGGGCT] [+] EMBL BE229788 [GAGACCGAAGANGGTGAGGAAAGGATGGCTTCCCCCTTGCGACGACTGCGATCATGGCGGGTTTCTCGCGGCGCCACCTCGCCGTGTTCTACGTCGGCGGCGTCAATGGCAGCGGCCANGACAACCANCACCCTCCACCGCCTTCTACCCCTTGCCCGCGCCGTCCACTCGTCNCTGCCGCCGANCAGGTNCGGCGATCCCCGTTCGCCTCCGCAGGNCCGTCGTCCCANCGGCGAANTTGAGCTCTCTAAACTGGAAAAGACCCCTCTGACCGTTTCGACGANATCGAANCTGCCATTCNTGCCAATCTCGTCNACGACATTGAGGCCTACAAATCAAGCCTTATGGCAGACCATGGTTTCTTTGAAAGAATGCTTACCTCTATGGGGATAAAAAAGANTTACACTCNTGACCAAACTCTATGGTTGTGCNAGCTGATTCTCATCTTCTTTGCCTCANGGTCTGTTGGGATTGGATTTGCCCANATCNATGAACGTCTGAAACAGGCTCCATCNAATGCTTTATAACTGANCAACCAACATGTNTGTTGTTTGGCCTGCTTAAAATTAAACTGTTGATCCCTCNCCACCTATCTGCNTTTATCGGCCTGCCCCCAACAAAGTTGAACTCCATTTATCCNTTGCTGTTNANTTGTCTGCCNGGGATTGGTTTACTTTTTTCNCNGGGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7734#0 CTGTCGGGGAAGAGCCGAAGAGGGTGAGGAAAGGATGGCTTCCCCCTTGCGACGACTGCG 60 consensus_7734#1 ----------GAGACCGAAGANGGTGAGGAAAGGATGGCTTCCCCCTTGCGACGACTGCG 50 ******* ************************************** consensus_7734#0 ATCATGGCGGGTTTCTCGCGGCGCCACCTCGCCGTGTTCTACGTCGGCGGCGTCAATGGC 120 consensus_7734#1 ATCATGGCGGGTTTCTCGCGGCGCCACCTCGCCGTGTTCTACGTCGGCGGCGTCAATGGC 110 ************************************************************ consensus_7734#0 AGCGGCCAGGACAACCAACACCCTCCACCGCCTTCTACCCCTTGCCCGCGCCGTCCACTC 180 consensus_7734#1 AGCGGCCANGACAACCANCACCCTCCACCGCCTTCTACCCCTTGCCCGCGCCGTCCACTC 170 ******** ******** ****************************************** consensus_7734#0 GTCGCTGCCGCCGAGCAGGTACGGCGATCCCCGTTCGCCTCCGCAGGCCCGTCGTCCCAG 240 consensus_7734#1 GTCNCTGCCGCCGANCAGGTNCGGCGATCCCCGTTCGCCTCCGCAGGNCCGTCGTCCCAN 230 *** ********** ***** ************************** *********** consensus_7734#0 CGGCGAAGTTGAGCTCTCTAAACTGGAAAAGACGCCCTCTGACCGTTTCGACGAGATCGA 300 consensus_7734#1 CGGCGAANTTGAGCTCTCTAAACTGGAAAAGAC-CCCTCTGACCGTTTCGACGANATCGA 289 ******* ************************* ******************** ***** consensus_7734#0 AGCTGCCATTCATGCCAATCTCGTCAACGACATTGAGGCCTACAAATCAAGCCTTATGGC 360 consensus_7734#1 ANCTGCCATTCNTGCCAATCTCGTCNACGACATTGAGGCCTACAAATCAAGCCTTATGGC 349 * ********* ************* ********************************** consensus_7734#0 AGACCATGGTTTCTTTGAAAGAATGCTTACCTCTATGGGGATAAAAAAGAGTTACACTCG 420 consensus_7734#1 AGACCATGGTTTCTTTGAAAGAATGCTTACCTCTATGGGGATAAAAAAGANTTACACTCN 409 ************************************************** ******** consensus_7734#0 TGACCAAACTCTATGGTTGTGCAAGCTGATTCTCATCTTCTTTGCCTCAGGGTCTGTTGG 480 consensus_7734#1 TGACCAAACTCTATGGTTGTGCNAGCTGATTCTCATCTTCTTTGCCTCANGGTCTGTTGG 469 ********************** ************************** ********** consensus_7734#0 GATTGGATTTGCCAAGATCGATGACCGTCTGAAACAGGCTCCATCAAATGCTTTATAACT 540 consensus_7734#1 GATTGGATTTGCCCANATCNATGAACGTCTGAAACAGGCTCCATCNAATGCTTTATAACT 529 ************* * *** **** ******************** ************** consensus_7734#0 GAGCAACAAACATGTCTGTTGTTTGGCCTGCTTAAAATTAAGCTGTTGATCACCTCGCAA 600 consensus_7734#1 GANCAACCAACATGTNTGTTGTTTGGCCTGCTTAAAATTAAACTGTTGATC-CCTCNCCA 588 ** **** ******* ************************* ********* **** * * consensus_7734#0 CCTATTCTGCATTTATCGGCCTGCCCTCGACGAGGTTGAACTCGATTTATCAGT-GCTGT 659 consensus_7734#1 CCTAT-CTGCNTTTATCGGCCTGCCCCCAACAAAGTTGAACTCCATTTATCCNTTGCTGT 647 ***** **** *************** * ** * ********* ******* * ***** consensus_7734#0 -AGATTGTCTGCTGGGA--TGGTGTACGTGTGCACGGGCGTCTGCTCGATGTGGAAACCG 716 consensus_7734#1 TNANTTGTCTGCCNGGGATTGGTTTACTTTTTTCNCNGGGCT------------------ 689 ******** ** **** *** * * * * consensus_7734#0 ATGGTGGCCGTTCAGAGCTTGGCGAGGGCGGTGAGGGCATTGGAGCATGTAGGCCGGAGA 776 consensus_7734#1 ------------------------------------------------------------ consensus_7734#0 GGATGAGGTGAGACAGCGGCGCTGGATCCATGGTGGGTAACAAGAGGCACCAGCGACAAC 836 consensus_7734#1 ------------------------------------------------------------ consensus_7734#0 CTGGGCAGCCTTGCACCGTTGTGCTTCAGAGCTCCATCAGGAACTATTTCTTTTACTCAT 896 consensus_7734#1 ------------------------------------------------------------ consensus_7734#0 AGTAAATCTTTTGTTTTTGTTTAGGGCAGTCAAGTCGGGCTTTTTTATGTTTGTGTTTAG 956 consensus_7734#1 ------------------------------------------------------------ consensus_7734#0 ATAATTGAACATCTACTTTGACCGACATTACTACTGCAGTATTGCAGCTTATTACCAGAT 1016 consensus_7734#1 ------------------------------------------------------------ consensus_7734#0 CATGCTCACGGGTTAAATTTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGC 1075 consensus_7734#1 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||