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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7738#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1564 fasta sequence
[TCCGTATTGTGTGCTGGCCAATCGCCACGGTCTTCGGATGGACGGCGACGGCGTCGGCGGCAGCATGCACGTGGTGATGCTGCCATGGCTGGCCTTCGG-CACATCCTCCCCTTCGCCGAGTTCGCCAAGCGCGTGGCTCGGCAGGGCCACCGGGTTACGCTCTTCTCCACGCCGAGGAACACCCGCCGCCTCATCGACGTGCCGCCGTCGCTCGCGGGGCGCATCCGCGTCGTGGACATCCCGCTGCCGCGCGTCGAGCACCTGCCGGAGCACGCCGAGGCGACCATCGACCTCCCCTCCAACGACCTCCGGCCCTACCTCCGCCGGGCCTACGACGAAGCCTTCTCCCGCGAGCTGTCTCGGCT-GCTGCAGGAGACGGGCCCGTCGAGGCCCGACTGGGTCCT-C-GCCGAC-TACGCCGCG-TACTGG-GCGCCGGCCGCCGCCTCGA-GGCACGGCGTG-CGTGC-GCGTTCCTCAGCCTGTTCGGAGCCGCGGCGGTC-TGCT-TCTTC-GTTCNCGC-GGAGACGCTCCAGGGCCGCGGCCCGTACGCCAAGACGGAGCCGGCGCACCTCACCGCCGTCCCCGAGTACGTCCCCTTCCCCACCACCGTCGCGTTCCGCGGCAACGAGGCGCGCGAGCTGTTCAAACCGAGCTTGATCCCGGACGAATCCGGCGTGTCGGAGAGCTACCGGTTCAGTCAGTCCATCGAAGGATGCCAGCTCGTCGCCGTCAGGAGCAACCAGGAGTTCGAGCCGGAGTGGCTGGAGCTGCTCGGCGAGCTCTACCAGAAGCCGGTGATCCCAATAGGGATGTTCCCTCCGCCGCCGCCACAAGACGTCGCCGGCCACGAGGAGACATTGCGGTGGCTGGACAGGCAAGAACCAAACTCCGTCGTCTACGCGGCGTTCGGCAGCGAGGTGAAGCTGACAGCCGAACAGCTGCAGAGAATCGCGCTCGGTCTTGAGGCATCCGAGCTGCCGTTCATCTGGGCATTCAGGGCGCCGCCGGACGCCGGCGACGGCG-ACGGGTTGCCGGGAGGCTTCAAGGAGCGCGTCAACGGCCGCGGAGTCGTCTGCCGAGGCTGGGTACCACAGGTCAAGTTCTTGGCTCACGCATCGGTCGGCGGGTTCCTGACGCACGCCGGCTGGAACTCCATCGCCGAGGGCCTCGCGAACGGCGTCAGGCTGGTGCTGCTGCCGCTGATGTTCGAGCAGGGCCTCAACGCCAGGCAGCTCGCCGAGAAGAAGGTTGCCGTCGAGGTGGCTCGCGACGAGGACGACGGCTCGTTCGCGGCCAACGACATCGTGGACGCGCTGAGGAGAGTCATGGTGGGAGAGGAAGGCGACGAGTTCGGGGTTAAGGTGAAGGAGCTCGCCAAGGTGTTTGGGGATGATGAGGTGAACGATCGATATGTGCGAGATTTTCTCAAGTGCCTGTCAGAATACAAGATGCAGCGACAAGGATAGTGCTGTTTTCTTGTGTGATTGTGTCTTCAGGCGTCACTGTAGTAGAAGC-AATTGATGTTTTGGAATTAAACAGAGTGATGGAATAAAGTTGCGTTTATAATAAAAAA]
[+] EMBL AU056372 [TCCGTATTGTGTGCTGGCCAATCGCCACGGTCTTCGGATGGACGGCGACGGCGTCGGCGGCAGCATGCACGTGGTGATGCTGCCATGGCTGGCCTTCGG CACATCCTCCCCTTCGCCGAGTTCGCCAAGCGCGTGGCTCGGCAGGGCCACCGGGTTACGCTCTTCTCCACGCCGAGGAACACCCGCCGCCTCATCGACGTGCCGCCGTCGCTCGCGGGGCGCATCCGCGTCGTGGACATCCCGCTGCCGCGCGTCGAGCACCTGCCGGAGCACGCCGAGGCGACCATCGACCTCCCCTCCAACGACCTCCGGCCCTACCTCCGCCGGGCCTACGACGAAGCCTTCTCCCGCGAGCTGTCTCGGCTGGCTGCAGGAGACGGGCCCGTCGAGGCCCGACTGGGTCCTNCGGCCGACTTACGCCGCGTTACTGGNGCGCCGGCCGCCGCCTCGANGGCACGGCGTG CGTGCGGCGTTCCTCAGCCTGTTCGGAGCCGCGGCGGTCTTGCTNTCTTCTGTTCNCGCGGGAGAC ]
[+] EMBL AK068362 [ TCGCCACGGTCTTCGGATGGACGGCGACGGCGTCGGCGGCAGCATGCACGTGGTGATGCTGCCATGGCTGGCCTTCGGCCACATCCTCCCCTTCGCCGAGTTCGCCAAGCGCGTGGCTCGGCAGGGCCACCGGGTTACGCTCTTCTCCACGCCGAGGAACACCCGCCGCCTCATCGACGTGCCGCCGTCGCTCGCGGGGCGCATCCGCGTCGTGGACATCCCGCTGCCGCGCGTCGAGCACCTGCCGGAGCACGCCGAGGCGACCATCGACCTCCCCTCCAACGACCTCCGGCCCTACCTCCGCCGGGCCTACGACGAAGCCTTCTCCCGCGAGCTGTCTCGGCT GCTGCAGGAGACGGGCCCGTCGAGGCCCGACTGGGTCCT C GCCGAC TACGCCGCG TACTGG GCGCCGGCCGACGCCTCGA GGCACGGCGTGCCGTGC GCGTTCCTCAGCCTGTTCGGCGCCGCGGCGCTC TGCT TCTTC GGTCCCGC GGAGACGCTCCAGGGCCGCGGCCCGTACGCCAAGACGGAGCCGGCGCACCTCACCGCCGTCCCCGAGTACGTCCCCTTCCCCACCACCGTCGCGTTCCGCGGCAACGAGGCGCGCGAGCTGTTCAAACCGAGCTTGATCCCGGACGAATCCGGCGTGTCGGAGAGCTACCGGTTCAGTCAGTCCATCGAAGGATGCCAGCTCGTCGCCGTCAGGAGCAACCAGGAGTTCGAGCCGGAGTGGCTGGAGCTGCTCGGCGAGCTCTACCAGAAGCCGGTGATCCCAATAGGGATGTTCCCTCCGCCGCCGCCACAAGACGTCGCCGGCCACGAGGAGACATTGCGGTGGCTGGACAGGCAAGAACCAAACTCCGTCGTCTACGCGGCGTTCGGCAGCGAGGTGAAGCTGACAGCCGAACAGCTGCAGAGAATCGCGCTCGGTCTTGAGGCATCCGAGCTGCCGTTCATCTGGGCATTCAGGGCGCCGCCGGACGCCGGCGACGGCG ACGGGTTGCCGGGAGGCTTCAAGGAGCGCGTCAACGGCCGCGGAGTCGTCTGCCGAGGCTGGGTACCACAGGTCAAGTTCTTGGCTCACGCATCGGTCGGCGGGTTCCTGACGCACGCCGGCTGGAACTCCATCGCCGAGGGCCTCGCGAACGGCGTCAGGCTGGTGCTGCTGCCGCTGATGTTCGAGCAGGGCCTCAACGCCAGGCAGCTCGCCGAGAAGAAGGTTGCCGTCGAGGTGGCTCGCGACGAGGACGACGGCTCGTTCGCGGCCAACGACATCGTGGACGCGCTGAGGAGAGTCATGGTGGGAGAGGAAGGCGACGAGTTCGGGGTTAAGGTGAAGGAGCTCGCCAAGGTGTTTGGGGATGATGAGGTGAACGATCGATATGTGCGAGATTTTCTCAAGTGCCTGTCAGAATACAAGATGCAGCGACAAGGATAGTGCTGTTTTCTTGTGTGATTGTGTCTTCAGGCGTCACTGTAGTAGAAGCGAATTGATGTTTTGGAATTAAACAGAGTGATGGAATAAAG ]
[+] EMBL BM418763 [ cCATTCA GGCCCCGCCGGAC CCGGCGACGGCGAACGGGTTGCCGGGAGGCTTCAAGGAGCGCGTCAACGGCCGCGGAGTCGTCTGCCGAGGCTGGGTACCACAGGTCAAGTTCTTGGCTCACGCATCGGTCGGCGGGTTCCTGACGCACGCCGGCTGGAACTCCATCGCCGAGGGCCTCGCGAACGGCGTCAGGCTGGTGCTGCTGCCGCTGATGTTCGAGCAGGGCCTCAACGCCAGGCAGCTCGCCGAGAAGAAGGTTGCCGTCGAGGTGGCTCGCGACGAGGACGACGGCTCGTTCGCGGCCAACGACATCGTGGACGCGCTGAGGAGAGTCATGGTGGGAGAGGAAGGCGACGAGTTCGGGGTTAAGGTGAAGGAGCTCGCCAAGGTGTTTGGGGATGATGAGGTGAACGATCGATATGTGCGAGATTTTCTCAAGTGCCTGTCAGAATACAAGATGCAGCGACAAGGATAGTGCTGTTTTCTTGTGTGATTGTGTCTTCAGGCGTCACTGTAGTAGAAGC AATTGATGTTTTGGAATTAAACAGAGTGATGGAATAAAGTTGCGTTTATAATAAAAAA]
[+] EMBL BM419684 [ tcCCGA GCTGGGTNCCNCAGGTCAAGTTCTTGGCTCACGCATCGGTCGGCGGGTTCCTGACGCACGCCGGCTGGAACTCCATCGCCGAGGGCCTCGCGAACGGCGTCAGGCTGGTGCTGCTGCCGCTGATGTTCGAGCAGGGCCTCAACGCCAGGCAGCTCGCCGAGAAGAAGGTTGCCGTCGAGGTGGCTCGCGACGAGGACGACGGCTCGTTCGCGGCCAACGACATCGTGGACGCGCTGAGGAGAGTCATGGTGGGAGAGGAAGGCGACGAGTTCGGGGTTAAGGTGAAGGAGCTCGCCAAGGTGTTTGGGGATGATGAGGTGAACGATCGATATGTGCGAGATTTTCTCAAGTGCCTGTCAGAATACAAGATGCAGCGACCAGGATAGTGCTGTTTTCTTGTGTGATTGTGTCTTCAGGCGTCACTGTAGTAGAAGC AATTGATGTTTTGGAATTAAACAGAGTGATGGAATAAAGTTGCGTTTATAATAAAAAA]
consensusID : consensus_7738#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence
[TCTTGGCTCACGCATCTGTCGCGGGTTCCTTGACGCACGCCGGCTGGGAACTCCATCGCCGAGGCCTCGGCGAACGGCGTCAGGCCTTGTGCTCCTCCCGCTGATGTTCCGACCAGGGCCTCAACGCCAGCAAGCTCCCCCGAGAAGAAAGGTTTGCCCTTCGAGTGGGCCTCCGCGACGAGGACCGACGGCTCGTTCCGCCAAACCGACATCGTGGACGGCGCTGAGGAGATCATGGTGGGAGAGGAAGGCGGACGAGTTCGGGTTAAGGTGAAGGAGCTCGCCAAGGTGTTTGGGGATGATGAGGTGAACGATCGATATGTGCGAGATTTTCTCAAGTGCCTGTCAGAATACAAGATGCAGCGACAAGGATAGTGCTGTTTTCTTGTGTGATTGTGTCTTCAGGCGTCACTGTAGTAGAAGCCAATTGATGTTTTGGAATTAAACAGAGTGATGGAATAAAGTTGCGTTTATAATAACTTCAAAAAA]
[+] EMBL BI813507 [TCTTGGCTCACGCATCTGTCGCGGGTTCCTTGACGCACGCCGGCTGGGAACTCCATCGCCGAGGCCTCGGCGAACGGCGTCAGGCCTTGTGCTCCTCCCGCTGATGTTCCGACCAGGGCCTCAACGCCAGCAAGCTCCCCCGAGAAGAAAGGTTTGCCCTTCGAGTGGGCCTCCGCGACGAGGACCGACGGCTCGTTCCGCCAAACCGACATCGTGGACGGCGCTGAGGAGATCATGGTGGGAGAGGAAGGCGGACGAGTTCGGGTTAAGGTGAAGGAGCTCGCCAAGGTGTTTGGGGATGATGAGGTGAACGATCGATATGTGCGAGATTTTCTCAAGTGCCTGTCAGAATACAAGATGCAGCGACAAGGATAGTGCTGTTTTCTTGTGTGATTGTGTCTTCAGGCGTCACTGTAGTAGAAGCCAATTGATGTTTTGGAATTAAACAGAGTGATGGAATAAAGTTGCGTTTATAATAACTTCAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7738#0 TCCGTATTGTGTGCTGGCCAATCGCCACGGTCTTCGGATGGACGGCGACGGCGTCGGCGG 60
consensus_7738#1 ------------------------------------------------------------
consensus_7738#0 CAGCATGCACGTGGTGATGCTGCCATGGCTGGCCTTCGGCACATCCTCCCCTTCGCCGAG 120
consensus_7738#1 ------------------------------------------------------------
consensus_7738#0 TTCGCCAAGCGCGTGGCTCGGCAGGGCCACCGGGTTACGCTCTTCTCCACGCCGAGGAAC 180
consensus_7738#1 ------------------------------------------------------------
consensus_7738#0 ACCCGCCGCCTCATCGACGTGCCGCCGTCGCTCGCGGGGCGCATCCGCGTCGTGGACATC 240
consensus_7738#1 ------------------------------------------------------------
consensus_7738#0 CCGCTGCCGCGCGTCGAGCACCTGCCGGAGCACGCCGAGGCGACCATCGACCTCCCCTCC 300
consensus_7738#1 ------------------------------------------------------------
consensus_7738#0 AACGACCTCCGGCCCTACCTCCGCCGGGCCTACGACGAAGCCTTCTCCCGCGAGCTGTCT 360
consensus_7738#1 ------------------------------------------------------------
consensus_7738#0 CGGCTGCTGCAGGAGACGGGCCCGTCGAGGCCCGACTGGGTCCTCGCCGACTACGCCGCG 420
consensus_7738#1 ------------------------------------------------------------
consensus_7738#0 TACTGGGCGCCGGCCGCCGCCTCGAGGCACGGCGTGCGTGCGCGTTCCTCAGCCTGTTCG 480
consensus_7738#1 ------------------------------------------------------------
consensus_7738#0 GAGCCGCGGCGGTCTGCTTCTTCGTTCNCGCGGAGACGCTCCAGGGCCGCGGCCCGTACG 540
consensus_7738#1 ------------------------------------------------------------
consensus_7738#0 CCAAGACGGAGCCGGCGCACCTCACCGCCGTCCCCGAGTACGTCCCCTTCCCCACCACCG 600
consensus_7738#1 ------------------------------------------------------------
consensus_7738#0 TCGCGTTCCGCGGCAACGAGGCGCGCGAGCTGTTCAAACCGAGCTTGATCCCGGACGAAT 660
consensus_7738#1 ------------------------------------------------------------
consensus_7738#0 CCGGCGTGTCGGAGAGCTACCGGTTCAGTCAGTCCATCGAAGGATGCCAGCTCGTCGCCG 720
consensus_7738#1 ------------------------------------------------------------
consensus_7738#0 TCAGGAGCAACCAGGAGTTCGAGCCGGAGTGGCTGGAGCTGCTCGGCGAGCTCTACCAGA 780
consensus_7738#1 ------------------------------------------------------------
consensus_7738#0 AGCCGGTGATCCCAATAGGGATGTTCCCTCCGCCGCCGCCACAAGACGTCGCCGGCCACG 840
consensus_7738#1 ------------------------------------------------------------
consensus_7738#0 AGGAGACATTGCGGTGGCTGGACAGGCAAGAACCAAACTCCGTCGTCTACGCGGCGTTCG 900
consensus_7738#1 ------------------------------------------------------------
consensus_7738#0 GCAGCGAGGTGAAGCTGACAGCCGAACAGCTGCAGAGAATCGCGCTCGGTCTTGAGGCAT 960
consensus_7738#1 ------------------------------------------------------------
consensus_7738#0 CCGAGCTGCCGTTCATCTGGGCATTCAGGGCGCCGCCGGACGCCGGCGACGGCGACGGGT 1020
consensus_7738#1 ------------------------------------------------------------
consensus_7738#0 TGCCGGGAGGCTTCAAGGAGCGCGTCAACGGCCGCGGAGTCGTCTGCCGAGGCTGGGTAC 1080
consensus_7738#1 ------------------------------------------------------------
consensus_7738#0 CACAGGTCAAGTTCTTGGCTCACGCATCGGTCGGCGGGTTCCTGACGCACGCCGGCTGG- 1139
consensus_7738#1 ------------TCTTGGCTCACGCATCTGTCGCGGGTTCCTTGACGCACGCCGGCTGGG 48
**************** **** ** * * *****************
consensus_7738#0 AACTCCATCGCCGAGGGCCTCGCGAACGGCGTCAGGC-TGGTGCTGCTGCCGCTGATGTT 1198
consensus_7738#1 AACTCCATCGCCGAGGCCTCGGCGAACGGCGTCAGGCCTTGTGCTCCTCCCGCTGATGTT 108
**************** * **************** * ***** ** ***********
consensus_7738#0 C-GAGCAGGGCCTCAACGCCAGGCAGCTCGCC-GAGAAGAAGG--TTGCCGTCGAGGTGG 1254
consensus_7738#1 CCGACCAGGGCCTCAACGCCAGCAAGCTCCCCCGAGAAGAAAGGTTTGCCCTTCGAGTGG 168
* ** ***************** ***** ** ******** * ***** * ****
consensus_7738#0 ---CTCGCGACGAGGAC-GACGGCTCGTTCGCGGCCAAC-GACATCGTGGACG-CGCTGA 1308
consensus_7738#1 GCCTCCGCGACGAGGACCGACGGCTCGTTC-CGCCAAACCGACATCGTGGACGGCGCTGA 227
************ ************ ** * *** ************* ******
consensus_7738#0 GGAGAGTCATGGTGGGAGAGGAAGGCG-ACGAGTTCGGGGTTAAGGTGAAGGAGCTCGCC 1367
consensus_7738#1 GGAGA-TCATGGTGGGAGAGGAAGGCGGACGAGTTCGGG-TTAAGGTGAAGGAGCTCGCC 285
***** ********************* *********** ********************
consensus_7738#0 AAGGTGTTTGGGGATGATGAGGTGAACGATCGATATGTGCGAGATTTTCTCAAGTGCCTG 1427
consensus_7738#1 AAGGTGTTTGGGGATGATGAGGTGAACGATCGATATGTGCGAGATTTTCTCAAGTGCCTG 345
************************************************************
consensus_7738#0 TCAGAATACAAGATGCAGCGACAAGGATAGTGCTGTTTTCTTGTGTGATTGTGTCTTCAG 1487
consensus_7738#1 TCAGAATACAAGATGCAGCGACAAGGATAGTGCTGTTTTCTTGTGTGATTGTGTCTTCAG 405
************************************************************
consensus_7738#0 GCGTCACTGTAGTAGAAGC-AATTGATGTTTTGGAATTAAACAGAGTGATGGAATAAAGT 1546
consensus_7738#1 GCGTCACTGTAGTAGAAGCCAATTGATGTTTTGGAATTAAACAGAGTGATGGAATAAAGT 465
******************* ****************************************
consensus_7738#0 TGCGTTTATAATAA----AAAA-- 1564
consensus_7738#1 TGCGTTTATAATAACTTCAAAAAA 489
************** ****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||