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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7740#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1274 fasta sequence
[AAAAGGTGATTCAACAACAGATGAGGTCGTTGATAGAGAGCTGCTGCAGGTAACTTCTGCTGCTGTATCCAAGAGATTAAGAATGGCCATAACTCAACTTAAAATTATGTTACATGCACTCTGCTTTATTTGCTGACGTCTGATCTTTTGCCTGCCTTTTAGGCTGTNAGATACTTCGACCAAAACAGAGCCGGTTATTTGAAGGTGGATGATNTAAGGTGCATTGTTCATAATTTGGGGAAGTTCTTATCTAACAGGGATGTGAAGGATTTGGTTCAAATCGCCCTTGTTGAGAGCAATTTTGCAAGGGATAATCGCATTATCTATACAAAGCTTGCGAAGAAAGTTGACCTCTGATCAGGTCCGACCTTGGCTAAGGAGTATGTTGAGATGGGCCGCAAATTAAACGAATAACCTTCTTTGAAGAGGCCAGCTACGGCGATGTCGATTTGAGTTACTTTACGATGTGTTCTCCTTACCATGACAAGGAGTAGCTAGATTTCATGTTTTTTTTTCTTTTATGGATGTCTTCACCATAAACATGGCAAACAAAGCTGTCGTTTTGTATCATGGTATGTGTACTTGGAAAATTTTCTTTTGATATAAGCATTCACCCAAGAAAGAATGTTGTACACTTATTATATATAAGATGTATGCTTGCGGGTGCCATGACCTTGTATTAAAAAAAAATTGCGTTTCCCAAGATCAAACCATGCATCATGGCATCAGATATGCTAGAGTTAGAATCTTTATCTAGATCTTTATAAACCTGATGCATGTGTTTGCACATGGTAGCCATTTTTTTCTGGAGTGGATGTGTTTCTTTTCNAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAANAAAAAAAAAAAAANAAAAGGNAANAAAAAAAATNAAGGGGGGCCAAGATGACAATTTTTTNNTTAACTAAATTGGNATTTGTCCCCCCCCCTGCCGCACGGTAATAACGGTGGGTGAAGAAAAAAAATTCGCTTACAACAAATTTTCTCTTTCTGCACACCTGCCCCTTTTCGAAAGGCGCGCCAAGGCGGAAAACTGCCGACGCGTCCGACCTTTCAAAGTATAGGNCAACCCCCCTCGGAAAGGGCCACTTACCCCCCACAGGTNGCTTACTCCCGCGCGCTTTGCCCGTTCCCCCTACCANGACGAATAACCGGCGCCCTCCCAGACCACCCCCCCTTTTCGCCGCTTTCTCTTCGGTTCCCCCCGCCTCCCTCTTTTTNGCGGCCTCTTTTATGGCGCGA]
[-] EMBL CA762130 [AAAAGGTGATTCAACAACAGATGAGGTCGTTGATAGAGAGCTGCTGCAGGTAACTTCTGCTGCTGTATCCAAGAGATTAAGAATGGCCATAACTCAACTTAAAATTATGTTACATGCACTCTGCTTTATTTGCTGACGTCTGATCTTTTGCCTGCCTTTTAGGCTGTNAGATACTTCGACCAAAACAGAGCCGGTTATTTGAAGGTGGATGATNTAAGGTGCATTGTTCATAATTTGGGGAAGTTCTTATCTAACAGGGATGTGAAGGATTTGGTTCAAATCGCCCTTGTTGAGAGCAATTTTGCAAGGGATAATCGCATTATCTATACAAAGCTTGCGAAGAAAGTTGACCTCTGATCAGGTCCGACCTTGGCTAAGGAGTATGTTGAGATGGGCCGCAAATTAAACGAATAACCTTCTTTGAAGAGGCCAGCTACGGCGATGTCGATTTGAGTTACTTTACGATGTGTTCTCCTTACCATGACAAGGAGTAGCTAGATTTCATGTTTTTTTTTCTTTTATGGATGTCTTCACCATAAACATGGCAAACAAAGCTGTCGTTTTGTATCATGGTATGTGTACTTGGAAAATTTTCTTTTGATATAAGCATTCACCCAAGAAAGAATGTTGTACACTTATTATATATAAGATGTATGCTTGCGGGTGCCATGACCTTGTATTAAAAAAAAA ]
[+] EMBL CA757994 [ TCTTTGAAGAGGCCAGCTACGGCGATGTCGATTTGAGTTACTTTACGATGTGTTCTCCTTACCATGACAAGGAGTAGCTAGATTTCATGTTTTTTTTTCTTTTATGGATGTCTTCACCATAAACATGGCAAACAAAGCTGTCGTTTTGTATCATTGTATGTGTACTTGGAAAATTTTCTTTTGATATAAGCATTCACCCAAGAAAGAATGTTGTACACTTATTATATATAAGATGTATGCTTGCGGGTGCCATGACCTTGTATTATCTTTACATTGCGTTTCCCAAGATCAAACCATGCATCATGGCATCAGATATGCTAGAGTTAGAATCTTTATCTAGATCTTTATAAACCTGATGCATGTGTTTGCACATGGTAGCCATTTTTTTCTGGAGTGGATGTGTTTCTTTTCNAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAANAAAAAAAAAAAAANAAAAGGNAANAAAAAAAATNAAGGGGGGCCAAGATGACAATTTTTTNNTTAACTAAATTGGNATTTGTCCCCCCCCCTGCCGCACGGTAATAACGGTGGGTGAAGAAAAAAAATTCGCTTACAACAAATTTTCTCTTTCTGCACACCTGCCCCTTTTCGAAAGGCGCGCCAAGGCGGAAAACTGCCGACGCGTCCGACCTTTCAAAGTATAGGNCAACCCCCCTCGGAAAGGGCCACTTACCCCCCACAGGTNGCTTACTCCCGCGCGCTTTGCCCGTTCCCCCTACCANGACGAATAACCGGCGCCCTCCCAGACCACCCCCCCTTTTCGCCGCTTTCTCTTCGGTTCCCCCCGCCTCCCTCTTTTTNGCGGCCTCTTTTATGGCGCGA]
consensusID : consensus_7740#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 517 fasta sequence
[ATAAATTTGGGGAAGTTCTNTATCTAACAGGGATGTGAAGGATNTGGTTCAAATCGCCCTTGTTGAGCGCAATTCTTGCAAGGGATAATCCGCATCATCTATNCAAAGCTTGCGAAGAAAGTTGNCCTCTGATCAGGTCCGACCTTGGCTAAGGAGTATGTTGAGATGGNCCGCAAATTAAACGAATANCCTTCTTTGAAGAGGCCAGCTACGGCGATGTCGATTTGAGTTNCTTTACGATGTGTTCTCCTTACCATGACAAGGAGTAGCTAGATTTCATGTTTTTTTTTCTTTTATGGATGTCTTCACCATAAACATGGCAAACAAAGCTGTCGTTTTGTATCATTGTATGTGTACTTGGAAAATTTTCTTTTGATATAAGCATTCACCCAAGAAAGAATGTTGTACACTTATTATATATAAGATGTATGCTTGCGGGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C97958 [ATAAATTTGGGGAAGTTCTNTATCTAACAGGGATGTGAAGGATNTGGTTCAAATCGCCCTTGTTGAGCGCAATTCTTGCAAGGGATAATCCGCATCATCTATNCAAAGCTTGCGAAGAAAGTTGNCCTCTGATCAGGTCCGACCTTGGCTAAGGAGTATGTTGAGATGGNCCGCAAATTAAACGAATANCCTTCTTTGAAGAGGCCAGCTACGGCGATGTCGATTTGAGTTNCTTTACGATGTGTTCTCCTTACCATGACAAGGAGTAGCTAGATTTCATGTTTTTTTTTCTTTTATGGATGTCTTCACCATAAACATGGCAAACAAAGCTGTCGTTTTGTATCATTGTATGTGTACTTGGAAAATTTTCTTTTGATATAAGCATTCACCCAAGAAAGAATGTTGTACACTTATTATATATAAGATGTATGCTTGCGGGTGCAAAAAAAAAAA ]
[+] EMBL CF322195 [ ATGTTTTTTTTTCTTTTATGGATGTCTTCACCATAAACATGGCAAACAAAGCTGTCGTTTTGTATCATTGTATGTGTACTTGGAAAATTTTCTTTTGATATAAGCATTCACCCAAGAAAGAATGTTGTACACTTATTATATATAAGATGTATGCTTGCGGGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF314717 [ ATGTTTTTTTTTCTTTTATGGATGTCTTCACCATAAACATGGCAAACAAAGCTGTCGTTTTGTATCATTGTATGTGTACTTGGAAAATTTTCTTTTGATATAAGCATTCACCCAAGAAAGAATGTTGTACACTTATTATATATAAGATGTATGCTTGCGGGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7740#0 AAAAGGTGATTCAACAACAGATGAGGTCGTTGATAGAGAGCTGCTGCAGGTAACTTCTGC 60
consensus_7740#1 ------------------------------------------------------------
consensus_7740#0 TGCTGTATCCAAGAGATTAAGAATGGCCATAACTCAACTTAAAATTATGTTACATGCACT 120
consensus_7740#1 ------------------------------------------------------------
consensus_7740#0 CTGCTTTATTTGCTGACGTCTGATCTTTTGCCTGCCTTTTAGGCTGTNAGATACTTCGAC 180
consensus_7740#1 ------------------------------------------------------------
consensus_7740#0 CAAAACAGAGCCGGTTATTTGAAGGTGGATGATNTAAGGTGCATTGTTCATAA-TTTGGG 239
consensus_7740#1 -------------------------------------------------ATAAATTTGGG 11
**** ******
consensus_7740#0 GAAGTTCTT-ATCTAACAGGGATGTGAAGGATTTGGTTCAAATCGCCCTTGTTGAGAGCA 298
consensus_7740#1 GAAGTTCTNTATCTAACAGGGATGTGAAGGATNTGGTTCAAATCGCCCTTGTTGAGCGCA 71
******** ********************** *********************** ***
consensus_7740#0 ATT-TTGCAAGGGATAATC-GCATTATCTATACAAAGCTTGCGAAGAAAGTTGACCTCTG 356
consensus_7740#1 ATTCTTGCAAGGGATAATCCGCATCATCTATNCAAAGCTTGCGAAGAAAGTTGNCCTCTG 131
*** *************** **** ****** ********************* ******
consensus_7740#0 ATCAGGTCCGACCTTGGCTAAGGAGTATGTTGAGATGGGCCGCAAATTAAACGAATAACC 416
consensus_7740#1 ATCAGGTCCGACCTTGGCTAAGGAGTATGTTGAGATGGNCCGCAAATTAAACGAATANCC 191
************************************** ****************** **
consensus_7740#0 TTCTTTGAAGAGGCCAGCTACGGCGATGTCGATTTGAGTTACTTTACGATGTGTTCTCCT 476
consensus_7740#1 TTCTTTGAAGAGGCCAGCTACGGCGATGTCGATTTGAGTTNCTTTACGATGTGTTCTCCT 251
**************************************** *******************
consensus_7740#0 TACCATGACAAGGAGTAGCTAGATTTCATGTTTTTTTTTCTTTTATGGATGTCTTCACCA 536
consensus_7740#1 TACCATGACAAGGAGTAGCTAGATTTCATGTTTTTTTTTCTTTTATGGATGTCTTCACCA 311
************************************************************
consensus_7740#0 TAAACATGGCAAACAAAGCTGTCGTTTTGTATCATGGTATGTGTACTTGGAAAATTTTCT 596
consensus_7740#1 TAAACATGGCAAACAAAGCTGTCGTTTTGTATCATTGTATGTGTACTTGGAAAATTTTCT 371
*********************************** ************************
consensus_7740#0 TTTGATATAAGCATTCACCCAAGAAAGAATGTTGTACACTTATTATATATAAGATGTATG 656
consensus_7740#1 TTTGATATAAGCATTCACCCAAGAAAGAATGTTGTACACTTATTATATATAAGATGTATG 431
************************************************************
consensus_7740#0 CTTGCGGGTGCCATGACCTTGTATTAAAAAAAAATTGCGTTTCCCAAGATCAAACCATGC 716
consensus_7740#1 CTTGCGGGTGCAAAAA----AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 487
*********** * * * ********* ** * *** *
consensus_7740#0 ATCATGGCATCAGATATGCTAGAGTTAGAATCTTTATCTAGATCTTTATAAACCTGATGC 776
consensus_7740#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------ 517
* * * * * * * * * **
consensus_7740#0 ATGTGTTTGCACATGGTAGCCATTTTTTTCTGGAGTGGATGTGTTTCTTTTCNAAAAAAA 836
consensus_7740#1 ------------------------------------------------------------
consensus_7740#0 AAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAANAAAAAAAAAAAAANAAAAGGNAANAA 896
consensus_7740#1 ------------------------------------------------------------
consensus_7740#0 AAAAAATNAAGGGGGGCCAAGATGACAATTTTTTNNTTAACTAAATTGGNATTTGTCCCC 956
consensus_7740#1 ------------------------------------------------------------
consensus_7740#0 CCCCCTGCCGCACGGTAATAACGGTGGGTGAAGAAAAAAAATTCGCTTACAACAAATTTT 1016
consensus_7740#1 ------------------------------------------------------------
consensus_7740#0 CTCTTTCTGCACACCTGCCCCTTTTCGAAAGGCGCGCCAAGGCGGAAAACTGCCGACGCG 1076
consensus_7740#1 ------------------------------------------------------------
consensus_7740#0 TCCGACCTTTCAAAGTATAGGNCAACCCCCCTCGGAAAGGGCCACTTACCCCCCACAGGT 1136
consensus_7740#1 ------------------------------------------------------------
consensus_7740#0 NGCTTACTCCCGCGCGCTTTGCCCGTTCCCCCTACCANGACGAATAACCGGCGCCCTCCC 1196
consensus_7740#1 ------------------------------------------------------------
consensus_7740#0 AGACCACCCCCCCTTTTCGCCGCTTTCTCTTCGGTTCCCCCCGCCTCCCTCTTTTTNGCG 1256
consensus_7740#1 ------------------------------------------------------------
consensus_7740#0 GCCTCTTTTATGGCGCGA 1274
consensus_7740#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||