These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7743#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1193 fasta sequence [CTCCCATGCCGCCGCCTCTTGCCTTGGAAGGGAGGAAAGAAGCGAAGAGAAGAGAGAGCTAGCGGCGGCGGCGGCGGCGGCGGCGAGGCAGCTGGTTGTTTGTTGTTGGTTCCCTCTCCACGGCGACCTCATTGCCTCTCCATCTCTCTCGAGAACCCTCCGCGCGGCGACCTAGCTCCACCGTCATCGCAGAGGAGGGGGGATTAGGCTGTAGTAGTGTGAGATGGCTTCGCCGGAGCCGGCCGCGGGGGCGGACGGCGCTTCGGCTAGCCAGACGGCCGTGGTGGAGCCGATCCGGTTGCCGACGCCGGAGGAGATCAAGGGGCAGGACATCTGGAACAACTGCGCCGTCCGCAGCGTCGTCAGTGGAGTCATGGGGGGTGGTTTAGGCGTGCTTATGGGGCTATTCTTTGGAGCTTTGGAAAACCCAATTACAGCAGAGGAGATGACAGCAAGACAACAAATAGTATACCAAGCTAAACAGATGGGTAGGCGAAGTATAAGCAATGCCAAAACCTTTGCAGTCATGGGCCTGATTTTCTCTGCCGCTGAATGTGTCATAGAGAAGGCTCGCGCAAAGCATGACACTACCAATTCAGCGGTGGCTGGCTGTGTCACAGGAGGGGCTTTAGCTGCAAAAGGTGGTCCTAAAGCTACATGTGTTGGATGTGTGGGGTTTGCCACCTTCTCGGTAATGATTGAGAAGTTCTTGGATCGTCATTCTTGAATCATTGGTGGAAACATTTTATCGCCTTATTCGCCGTTAATTTCAAGTGAAGCTTTTTGTAGCAGGTTAGCAACCAAGAGGTGGATT-CAGCATCCAAAACAACCTTTAGT-CATTTTAAGACATTCACTCATTGACATGTCTTCTGAGGTCTTGCAGACCAAGATTTTGTTATTTTACGAGTGTTACCCAACATGGTAGGCATAACTGGAGTAACTGCGAGGTCTACAGAAATCGACCTTTAATACGAGGCAATGGTTTTGAGTTCTGCAATATGTTGTATCATTCTCACTATACGGCTGCTATATTTATCTTCGCAATCCGTATCCAATTTGCTGTTATCTTGTCTCACGTTACTCCAATTCTTTATTTCTACTGATCTATTGTCTGACAATCTAGTGGCACGATATTTGGGACTGTTCAGAACACTGATCAAGTGTTGTACCATCTTTATATACTTGAGATAGCA] [+] EMBL AK100042 [CTCCCATGCCGCCGCCTCTTGCCTTGGAAGGGAGGAAAGAAGCGAAGAGAAGAGAGAGCTAGCGGCGGCGGCGGCGGCGGCGGCGAGGCAGCTGGTTGTTTGTTGTTGGTTCCCTCTCCACGGCGACCTCATTGCCTCTCCATCTCTCTCGAGAACCCTCCGCGCGGCGACCTAGCTCCACCGTCATCGCAGAGGAGGGGGGATTAGGCTGTAGTAGTGTGAGATGGCTTCGCCGGAGCCGGCCGCGGGGGCGGACGGCGCTTCGGCTAGCCAGACGGCCGTGGTGGAGCCGATCCGGTTGCCGACGCCGGAGGAGATCAAGGGGCAGGACATCTGGAACAACTGCGCCGTCCGCAGCGTCGTCAGTGGAGTCATGGGGGGTGGTTTAGGCGTGCTTATGGGGCTATTCTTTGGAGCTTTGGAAAACCCAATTACAGCAGAGGAGATGACAGCAAGACAACAAATAGTATACCAAGCTAAACAGATGGGTAGGCGAAGTATAAGCAATGCCAAAACCTTTGCAGTCATGGGCCTGATTTTCTCTGCCGCTGAATGTGTCATAGAGAAGGCTCGCGCAAAGCATGACACTACCAATTCAGCGGTGGCTGGCTGTGTCACAGGAGGGGCTTTAGCTGCAAAAGGTGGTCCTAAAGCTACATGTGTTGGATGTGTGGGGTTTGCCACCTTCTCGGTAATGATTGAGAAGTTCTTGGATCGTCATTCTTGAATCATTGGTGGAAACATTTTATCGCCTTATTCGCCGTTAATTTCAAGTGAAGCTTTTTGTAGCAGGTTAGCAACCAAGAGGTGGATT CAGCATCCAAAACAACCTTTAGT CATTTTAAGACATTCACTCATTGACATGTCTTCTGAGGTCTTGCAGACCAAGATTTTGTTATTTTACGAGTGTTACCCAACATGGTAGGCATAACTGGAGTAACTGCGAGGTCTACAGAAATCGACCTTTAATACGAGGCAATGGTTTTGAGTTCTGCAATATGTTGTATCATTCTCACTATACGGCTGCTATATTTATCTTCGCAATCCGTATCCAATTTGCTGTTATCTTGTCTCACGTTACTCCAATTCTTTATTTCTACTGATCTATTGTCTGACAATCTAGTGGCACGATATTTGGGACTGTTCAGAACACTGATCAAGTGTTGTACCATCTTTATATACTTGAGATAGCA] [+] EMBL OS0606A [ TGTTTGTTGTTGGTTCCCTCTCCACGGCGACCTCATTGCCTCTCCATCTCTCTCGAGAACCCTCCGCGCGGCGACCTAGCTCCACCGTCATCGCAGAGGAGGGGGGATTAGGCTGTAGTAGTGTGAGATGGCTTCGCCGGAGCCGGCCGCGGGGGCGGACGGCGCTTCGGCTAGCCAGACGGCCGTGGTGGAGCCGATCCGGTTGCCGACGCCGGAGGAGATCAAGGGGCAGGACATCTGGAACAACTGCGCCGTCCGCAGCGTCGTCAGTGGAGTCATGGGGGGTGGTTTAGGCGTGCTTATGGGG TATTCT ] [+] EMBL C98085 [ AGGTGGATTCCAGCACCCAAAACANCCTTTAGTCCATTTTAAGACATNCACTCATTGACATGTCNTCTGA GTCTTGCAGACCAAGATTTTGTTATTTTACGNGTGTTACCCAACATGGTAGGCATAACTGGNGTAACTGCGNGGTCTACAGAAATCGNCCTTTAATACGAGGCAATGGTTTTGAGTTCTGCAATATGTTGTATCATTCTCACTATACGGCTGCTATATTTATCTTCGCAATCCGTATCCAATTTGCTGTTATCTTGTCTCACGTTACTCCAATTCTTTATTTCTACTGATCTATTGTTTGACAAaaaaaaa ] consensusID : consensus_7743#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [TCTTTGGAGCTTTGGAAAACCCAATTCCAGCAGGGGAGATGCCAGCAAGCCACCAAATAGTATATCAAGCTAAACAGAGGGGTAGGCGAAGTATAAGCAATGCCAAAACCTTTGCAGTCATGGGCCTGATTTTCTCTGCCGCTGAATGTGTTATAGAGAAGGCTCGCGCAAAGCATGACACTACCAATTTAGCGGTGGCTGGCTGTGTCACAGGAGGGGCTTTAGCTGCAAAAGGTGGTCCTAAAGCTACATGTGTTGGATGTGTGGGGTTTGCCACCTTCTCGGTAATGATTGAGAAGTTCTTGGATCGTCATTCTTGAATCATTGGTGGAAACATTTTATCGCCTTATTTGCCGTTAATTTCAAGTGAAGCTTTTTGTAGCAGGTTAGCAACCAAGAGGTGGATTCAGCATCCAAAACAACCTTTAGTCATTTTAAGACATTCACTCATTGACATGTTTTTTGAGGTCTTGCAGAGCAAGATTTTGTTATTTTACGAGTGTTACCCAACATTGTAGGCATAACTGGAGTAACTGCGAGGTTTACATAAATCGACCTTTAATACGAGGCAATGGTTTTGAGTTTTGCAATATGTTGTATCATTCTCACTATACGGGTGCTATATTTATTTTCGCAATCCGTATCCAATTTGCTGTTAAAAAAAAAAAAAAAAAAA] [-] EMBL CA762600 [TCTTTGGAGCTTTGGAAAACCCAATTCCAGCAGGGGAGATGCCAGCAAGCCACCAAATAGTATATCAAGCTAAACAGAGGGGTAGGCGAAGTATAAGCAATGCCAAAACCTTTGCAGTCATGGGCCTGATTTTCTCTGCCGCTGAATGTGTTATAGAGAAGGCTCGCGCAAAGCATGACACTACCAATTTAGCGGTGGCTGGCTGTGTCACAGGAGGGGCTTTAGCTGCAAAAGGTGGTCCTAAAGCTACATGTGTTGGATGTGTGGGGTTTGCCACCTTCTCGGTAATGATTGAGAAGTTCTTGGATCGTCATTCTTGAATCATTGGTGGAAACATTTTATCGCCTTATTTGCCGTTAATTTCAAGTGAAGCTTTTTGTAGCAGGTTAGCAACCAAGAGGTGGATTCAGCATCCAAAACAACCTTTAGTCATTTTAAGACATTCACTCATTGACATGTTTTTTGAGGTCTTGCAGAGCAAGATTTTGTTATTTTACGAGTGTTACCCAACATTGTAGGCATAACTGGAGTAACTGCGAGGTTTACATAAATCGACCTTTAATACGAGGCAATGGTTTTGAGTTTTGCAATATGTTGTATCATTCTCACTATACGGGTGCTATATTTATTTTCGCAATCCGTATCCAATTTGCTGTTAAAAAAAAAAAAAAAAAAA] consensusID : consensus_7743#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence [GTGGCTGGCTGTGTCACAGGAGGGGCTTTAGCTGCAAAAGGTGGTCCTAAAGCTACATGTGTTGGATGTGTGGGGTTTGTCACCTTCTCGGTAATGATTGAGAAGTTCTTGGATCGTCATTCTTGAATCATTGGTGGAAACATTTTATCGCCTTATTCGCCGTTAATTTCAAGTGAAGCTTTTTGTAGCAGACCAAGATTTTGTTATTTTACGAGTGTTACCCAACATGGTAGGCATAACTGGAGTAACTGCGAGGTCTACAGAAATCGACCTTTAATACGAGGCAATGGTTTTGAGTTCTGCAATATGTTGTACCATTCTCACTATACGGCTGCTATATTTATCTTCGCAATCCGTATCCAATTTGCTGTTATCTTGTCTCACGTTACTCCAATTCTTTATTTCTACTGATCTATTGTCTGACAATCTAGTGACACGATATTTGGGACTGTTCAGAACACTGATCAAGTGTTGTACCATCTTTATATACTTGAGATAGCACTTGTACTTTCTTGAAAAAA] [-] EMBL CF309921 [GTGGCTGGCTGTGTCACAGGAGGGGCTTTAGCTGCAAAAGGTGGTCCTAAAGCTACATGTGTTGGATGTGTGGGGTTTGTCACCTTCTCGGTAATGATTGAGAAGTTCTTGGATCGTCATTCTTGAATCATTGGTGGAAACATTTTATCGCCTTATTCGCCGTTAATTTCAAGTGAAGCTTTTTGTAGCAGACCAAGATTTTGTTATTTTACGAGTGTTACCCAACATGGTAGGCATAACTGGAGTAACTGCGAGGTCTACAGAAATCGACCTTTAATACGAGGCAATGGTTTTGAGTTCTGCAATATGTTGTACCATTCTCACTATACGGCTGCTATATTTATCTTCGCAATCCGTATCCAATTTGCTGTTATCTTGTCTCACGTTACTCCAATTCTTTATTTCTACTGATCTATTGTCTGACAATCTAGTGACACGATATTTGGGACTGTTCAGAACACTGATCAAGTGTTGTACCATCTTTATATACTTGAGATAGCACTTGTACTTTCTTGAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7743#0 CTCCCATGCCGCCGCCTCTTGCCTTGGAAGGGAGGAAAGAAGCGAAGAGAAGAGAGAGCT 60 consensus_7743#2 ------------------------------------------------------------ consensus_7743#1 ------------------------------------------------------------ consensus_7743#0 AGCGGCGGCGGCGGCGGCGGCGGCGAGGCAGCTGGTTGTTTGTTGTTGGTTCCCTCTCCA 120 consensus_7743#2 ------------------------------------------------------------ consensus_7743#1 ------------------------------------------------------------ consensus_7743#0 CGGCGACCTCATTGCCTCTCCATCTCTCTCGAGAACCCTCCGCGCGGCGACCTAGCTCCA 180 consensus_7743#2 ------------------------------------------------------------ consensus_7743#1 ------------------------------------------------------------ consensus_7743#0 CCGTCATCGCAGAGGAGGGGGGATTAGGCTGTAGTAGTGTGAGATGGCTTCGCCGGAGCC 240 consensus_7743#2 ------------------------------------------------------------ consensus_7743#1 ------------------------------------------------------------ consensus_7743#0 GGCCGCGGGGGCGGACGGCGCTTCGGCTAGCCAGACGGCCGTGGTGGAGCCGATCCGGTT 300 consensus_7743#2 ------------------------------------------------------------ consensus_7743#1 ------------------------------------------------------------ consensus_7743#0 GCCGACGCCGGAGGAGATCAAGGGGCAGGACATCTGGAACAACTGCGCCGTCCGCAGCGT 360 consensus_7743#2 ------------------------------------------------------------ consensus_7743#1 ------------------------------------------------------------ consensus_7743#0 CGTCAGTGGAGTCATGGGGGGTGGTTTAGGCGTGCTTATGGGGCTATTCTTTGGAGCTTT 420 consensus_7743#2 ------------------------------------------------------------ consensus_7743#1 -----------------------------------------------TCTTTGGAGCTTT 13 consensus_7743#0 GGAAAACCCAATTACAGCAGAGGAGATGACAGCAAGACAACAAATAGTATACCAAGCTAA 480 consensus_7743#2 ------------------------------------------------------------ consensus_7743#1 GGAAAACCCAATTCCAGCAGGGGAGATGCCAGCAAGCCACCAAATAGTATATCAAGCTAA 73 consensus_7743#0 ACAGATGGGTAGGCGAAGTATAAGCAATGCCAAAACCTTTGCAGTCATGGGCCTGATTTT 540 consensus_7743#2 ------------------------------------------------------------ consensus_7743#1 ACAGAGGGGTAGGCGAAGTATAAGCAATGCCAAAACCTTTGCAGTCATGGGCCTGATTTT 133 consensus_7743#0 CTCTGCCGCTGAATGTGTCATAGAGAAGGCTCGCGCAAAGCATGACACTACCAATTCAGC 600 consensus_7743#2 ------------------------------------------------------------ consensus_7743#1 CTCTGCCGCTGAATGTGTTATAGAGAAGGCTCGCGCAAAGCATGACACTACCAATTTAGC 193 consensus_7743#0 GGTGGCTGGCTGTGTCACAGGAGGGGCTTTAGCTGCAAAAGGTGGTCCTAAAGCTACATG 660 consensus_7743#2 -GTGGCTGGCTGTGTCACAGGAGGGGCTTTAGCTGCAAAAGGTGGTCCTAAAGCTACATG 59 consensus_7743#1 GGTGGCTGGCTGTGTCACAGGAGGGGCTTTAGCTGCAAAAGGTGGTCCTAAAGCTACATG 253 *********************************************************** consensus_7743#0 TGTTGGATGTGTGGGGTTTGCCACCTTCTCGGTAATGATTGAGAAGTTCTTGGATCGTCA 720 consensus_7743#2 TGTTGGATGTGTGGGGTTTGTCACCTTCTCGGTAATGATTGAGAAGTTCTTGGATCGTCA 119 consensus_7743#1 TGTTGGATGTGTGGGGTTTGCCACCTTCTCGGTAATGATTGAGAAGTTCTTGGATCGTCA 313 ******************** *************************************** consensus_7743#0 TTCTTGAATCATTGGTGGAAACATTTTATCGCCTTATTCGCCGTTAATTTCAAGTGAAGC 780 consensus_7743#2 TTCTTGAATCATTGGTGGAAACATTTTATCGCCTTATTCGCCGTTAATTTCAAGTGAAGC 179 consensus_7743#1 TTCTTGAATCATTGGTGGAAACATTTTATCGCCTTATTTGCCGTTAATTTCAAGTGAAGC 373 ************************************** ********************* consensus_7743#0 TTTTTGTAGCAGGTTAGCAACCAAGAGGTGGATTCAGCATCCAAAACAACCTTTAGTCAT 840 consensus_7743#2 TTTTTGTAGCAG------------------------------------------------ 191 consensus_7743#1 TTTTTGTAGCAGGTTAGCAACCAAGAGGTGGATTCAGCATCCAAAACAACCTTTAGTCAT 433 ************ consensus_7743#0 TTTAAGACATTCACTCATTGACATGTCTTCTGAGGTCTTGCAGACCAAGATTTTGTTATT 900 consensus_7743#2 -------------------------------------------ACCAAGATTTTGTTATT 208 consensus_7743#1 TTTAAGACATTCACTCATTGACATGTTTTTTGAGGTCTTGCAGAGCAAGATTTTGTTATT 493 * *************** consensus_7743#0 TTACGAGTGTTACCCAACATGGTAGGCATAACTGGAGTAACTGCGAGGTCTACAGAAATC 960 consensus_7743#2 TTACGAGTGTTACCCAACATGGTAGGCATAACTGGAGTAACTGCGAGGTCTACAGAAATC 268 consensus_7743#1 TTACGAGTGTTACCCAACATTGTAGGCATAACTGGAGTAACTGCGAGGTTTACATAAATC 553 ******************** **************************** **** ***** consensus_7743#0 GACCTTTAATACGAGGCAATGGTTTTGAGTTCTGCAATATGTTGTATCATTCTCACTATA 1020 consensus_7743#2 GACCTTTAATACGAGGCAATGGTTTTGAGTTCTGCAATATGTTGTACCATTCTCACTATA 328 consensus_7743#1 GACCTTTAATACGAGGCAATGGTTTTGAGTTTTGCAATATGTTGTATCATTCTCACTATA 613 ******************************* ************** ************* consensus_7743#0 CGGCTGCTATATTTATCTTCGCAATCCGTATCCAATTTGCTGTTATCTTGTCTCACGTTA 1080 consensus_7743#2 CGGCTGCTATATTTATCTTCGCAATCCGTATCCAATTTGCTGTTATCTTGTCTCACGTTA 388 consensus_7743#1 CGGGTGCTATATTTATTTTCGCAATCCGTATCCAATTTGCTGTTAAAAAAAAAAAAAAAA 673 *** ************ **************************** * * consensus_7743#0 CTCCAATTCTTTATTTCTACTGATCTATTGTCTGACAATCTAGTGGCACGATATTTGGGA 1140 consensus_7743#2 CTCCAATTCTTTATTTCTACTGATCTATTGTCTGACAATCTAGTGACACGATATTTGGGA 448 consensus_7743#1 AAA--------------------------------------------------------- 676 consensus_7743#0 CTGTTCAGAACACTGATCAAGTGTTGTACCATCTTTATATACTTGAGATAGCA------- 1193 consensus_7743#2 CTGTTCAGAACACTGATCAAGTGTTGTACCATCTTTATATACTTGAGATAGCACTTGTAC 508 consensus_7743#1 ------------------------------------------------------------ consensus_7743#0 ------------- consensus_7743#2 TTTCTTGAAAAAA 521 consensus_7743#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||