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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7743#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1193 fasta sequence
[CTCCCATGCCGCCGCCTCTTGCCTTGGAAGGGAGGAAAGAAGCGAAGAGAAGAGAGAGCTAGCGGCGGCGGCGGCGGCGGCGGCGAGGCAGCTGGTTGTTTGTTGTTGGTTCCCTCTCCACGGCGACCTCATTGCCTCTCCATCTCTCTCGAGAACCCTCCGCGCGGCGACCTAGCTCCACCGTCATCGCAGAGGAGGGGGGATTAGGCTGTAGTAGTGTGAGATGGCTTCGCCGGAGCCGGCCGCGGGGGCGGACGGCGCTTCGGCTAGCCAGACGGCCGTGGTGGAGCCGATCCGGTTGCCGACGCCGGAGGAGATCAAGGGGCAGGACATCTGGAACAACTGCGCCGTCCGCAGCGTCGTCAGTGGAGTCATGGGGGGTGGTTTAGGCGTGCTTATGGGGCTATTCTTTGGAGCTTTGGAAAACCCAATTACAGCAGAGGAGATGACAGCAAGACAACAAATAGTATACCAAGCTAAACAGATGGGTAGGCGAAGTATAAGCAATGCCAAAACCTTTGCAGTCATGGGCCTGATTTTCTCTGCCGCTGAATGTGTCATAGAGAAGGCTCGCGCAAAGCATGACACTACCAATTCAGCGGTGGCTGGCTGTGTCACAGGAGGGGCTTTAGCTGCAAAAGGTGGTCCTAAAGCTACATGTGTTGGATGTGTGGGGTTTGCCACCTTCTCGGTAATGATTGAGAAGTTCTTGGATCGTCATTCTTGAATCATTGGTGGAAACATTTTATCGCCTTATTCGCCGTTAATTTCAAGTGAAGCTTTTTGTAGCAGGTTAGCAACCAAGAGGTGGATT-CAGCATCCAAAACAACCTTTAGT-CATTTTAAGACATTCACTCATTGACATGTCTTCTGAGGTCTTGCAGACCAAGATTTTGTTATTTTACGAGTGTTACCCAACATGGTAGGCATAACTGGAGTAACTGCGAGGTCTACAGAAATCGACCTTTAATACGAGGCAATGGTTTTGAGTTCTGCAATATGTTGTATCATTCTCACTATACGGCTGCTATATTTATCTTCGCAATCCGTATCCAATTTGCTGTTATCTTGTCTCACGTTACTCCAATTCTTTATTTCTACTGATCTATTGTCTGACAATCTAGTGGCACGATATTTGGGACTGTTCAGAACACTGATCAAGTGTTGTACCATCTTTATATACTTGAGATAGCA]
[+] EMBL AK100042 [CTCCCATGCCGCCGCCTCTTGCCTTGGAAGGGAGGAAAGAAGCGAAGAGAAGAGAGAGCTAGCGGCGGCGGCGGCGGCGGCGGCGAGGCAGCTGGTTGTTTGTTGTTGGTTCCCTCTCCACGGCGACCTCATTGCCTCTCCATCTCTCTCGAGAACCCTCCGCGCGGCGACCTAGCTCCACCGTCATCGCAGAGGAGGGGGGATTAGGCTGTAGTAGTGTGAGATGGCTTCGCCGGAGCCGGCCGCGGGGGCGGACGGCGCTTCGGCTAGCCAGACGGCCGTGGTGGAGCCGATCCGGTTGCCGACGCCGGAGGAGATCAAGGGGCAGGACATCTGGAACAACTGCGCCGTCCGCAGCGTCGTCAGTGGAGTCATGGGGGGTGGTTTAGGCGTGCTTATGGGGCTATTCTTTGGAGCTTTGGAAAACCCAATTACAGCAGAGGAGATGACAGCAAGACAACAAATAGTATACCAAGCTAAACAGATGGGTAGGCGAAGTATAAGCAATGCCAAAACCTTTGCAGTCATGGGCCTGATTTTCTCTGCCGCTGAATGTGTCATAGAGAAGGCTCGCGCAAAGCATGACACTACCAATTCAGCGGTGGCTGGCTGTGTCACAGGAGGGGCTTTAGCTGCAAAAGGTGGTCCTAAAGCTACATGTGTTGGATGTGTGGGGTTTGCCACCTTCTCGGTAATGATTGAGAAGTTCTTGGATCGTCATTCTTGAATCATTGGTGGAAACATTTTATCGCCTTATTCGCCGTTAATTTCAAGTGAAGCTTTTTGTAGCAGGTTAGCAACCAAGAGGTGGATT CAGCATCCAAAACAACCTTTAGT CATTTTAAGACATTCACTCATTGACATGTCTTCTGAGGTCTTGCAGACCAAGATTTTGTTATTTTACGAGTGTTACCCAACATGGTAGGCATAACTGGAGTAACTGCGAGGTCTACAGAAATCGACCTTTAATACGAGGCAATGGTTTTGAGTTCTGCAATATGTTGTATCATTCTCACTATACGGCTGCTATATTTATCTTCGCAATCCGTATCCAATTTGCTGTTATCTTGTCTCACGTTACTCCAATTCTTTATTTCTACTGATCTATTGTCTGACAATCTAGTGGCACGATATTTGGGACTGTTCAGAACACTGATCAAGTGTTGTACCATCTTTATATACTTGAGATAGCA]
[+] EMBL OS0606A [ TGTTTGTTGTTGGTTCCCTCTCCACGGCGACCTCATTGCCTCTCCATCTCTCTCGAGAACCCTCCGCGCGGCGACCTAGCTCCACCGTCATCGCAGAGGAGGGGGGATTAGGCTGTAGTAGTGTGAGATGGCTTCGCCGGAGCCGGCCGCGGGGGCGGACGGCGCTTCGGCTAGCCAGACGGCCGTGGTGGAGCCGATCCGGTTGCCGACGCCGGAGGAGATCAAGGGGCAGGACATCTGGAACAACTGCGCCGTCCGCAGCGTCGTCAGTGGAGTCATGGGGGGTGGTTTAGGCGTGCTTATGGGG TATTCT ]
[+] EMBL C98085 [ AGGTGGATTCCAGCACCCAAAACANCCTTTAGTCCATTTTAAGACATNCACTCATTGACATGTCNTCTGA GTCTTGCAGACCAAGATTTTGTTATTTTACGNGTGTTACCCAACATGGTAGGCATAACTGGNGTAACTGCGNGGTCTACAGAAATCGNCCTTTAATACGAGGCAATGGTTTTGAGTTCTGCAATATGTTGTATCATTCTCACTATACGGCTGCTATATTTATCTTCGCAATCCGTATCCAATTTGCTGTTATCTTGTCTCACGTTACTCCAATTCTTTATTTCTACTGATCTATTGTTTGACAAaaaaaaa ]
consensusID : consensus_7743#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence
[TCTTTGGAGCTTTGGAAAACCCAATTCCAGCAGGGGAGATGCCAGCAAGCCACCAAATAGTATATCAAGCTAAACAGAGGGGTAGGCGAAGTATAAGCAATGCCAAAACCTTTGCAGTCATGGGCCTGATTTTCTCTGCCGCTGAATGTGTTATAGAGAAGGCTCGCGCAAAGCATGACACTACCAATTTAGCGGTGGCTGGCTGTGTCACAGGAGGGGCTTTAGCTGCAAAAGGTGGTCCTAAAGCTACATGTGTTGGATGTGTGGGGTTTGCCACCTTCTCGGTAATGATTGAGAAGTTCTTGGATCGTCATTCTTGAATCATTGGTGGAAACATTTTATCGCCTTATTTGCCGTTAATTTCAAGTGAAGCTTTTTGTAGCAGGTTAGCAACCAAGAGGTGGATTCAGCATCCAAAACAACCTTTAGTCATTTTAAGACATTCACTCATTGACATGTTTTTTGAGGTCTTGCAGAGCAAGATTTTGTTATTTTACGAGTGTTACCCAACATTGTAGGCATAACTGGAGTAACTGCGAGGTTTACATAAATCGACCTTTAATACGAGGCAATGGTTTTGAGTTTTGCAATATGTTGTATCATTCTCACTATACGGGTGCTATATTTATTTTCGCAATCCGTATCCAATTTGCTGTTAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA762600 [TCTTTGGAGCTTTGGAAAACCCAATTCCAGCAGGGGAGATGCCAGCAAGCCACCAAATAGTATATCAAGCTAAACAGAGGGGTAGGCGAAGTATAAGCAATGCCAAAACCTTTGCAGTCATGGGCCTGATTTTCTCTGCCGCTGAATGTGTTATAGAGAAGGCTCGCGCAAAGCATGACACTACCAATTTAGCGGTGGCTGGCTGTGTCACAGGAGGGGCTTTAGCTGCAAAAGGTGGTCCTAAAGCTACATGTGTTGGATGTGTGGGGTTTGCCACCTTCTCGGTAATGATTGAGAAGTTCTTGGATCGTCATTCTTGAATCATTGGTGGAAACATTTTATCGCCTTATTTGCCGTTAATTTCAAGTGAAGCTTTTTGTAGCAGGTTAGCAACCAAGAGGTGGATTCAGCATCCAAAACAACCTTTAGTCATTTTAAGACATTCACTCATTGACATGTTTTTTGAGGTCTTGCAGAGCAAGATTTTGTTATTTTACGAGTGTTACCCAACATTGTAGGCATAACTGGAGTAACTGCGAGGTTTACATAAATCGACCTTTAATACGAGGCAATGGTTTTGAGTTTTGCAATATGTTGTATCATTCTCACTATACGGGTGCTATATTTATTTTCGCAATCCGTATCCAATTTGCTGTTAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_7743#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence
[GTGGCTGGCTGTGTCACAGGAGGGGCTTTAGCTGCAAAAGGTGGTCCTAAAGCTACATGTGTTGGATGTGTGGGGTTTGTCACCTTCTCGGTAATGATTGAGAAGTTCTTGGATCGTCATTCTTGAATCATTGGTGGAAACATTTTATCGCCTTATTCGCCGTTAATTTCAAGTGAAGCTTTTTGTAGCAGACCAAGATTTTGTTATTTTACGAGTGTTACCCAACATGGTAGGCATAACTGGAGTAACTGCGAGGTCTACAGAAATCGACCTTTAATACGAGGCAATGGTTTTGAGTTCTGCAATATGTTGTACCATTCTCACTATACGGCTGCTATATTTATCTTCGCAATCCGTATCCAATTTGCTGTTATCTTGTCTCACGTTACTCCAATTCTTTATTTCTACTGATCTATTGTCTGACAATCTAGTGACACGATATTTGGGACTGTTCAGAACACTGATCAAGTGTTGTACCATCTTTATATACTTGAGATAGCACTTGTACTTTCTTGAAAAAA]
[-] EMBL CF309921 [GTGGCTGGCTGTGTCACAGGAGGGGCTTTAGCTGCAAAAGGTGGTCCTAAAGCTACATGTGTTGGATGTGTGGGGTTTGTCACCTTCTCGGTAATGATTGAGAAGTTCTTGGATCGTCATTCTTGAATCATTGGTGGAAACATTTTATCGCCTTATTCGCCGTTAATTTCAAGTGAAGCTTTTTGTAGCAGACCAAGATTTTGTTATTTTACGAGTGTTACCCAACATGGTAGGCATAACTGGAGTAACTGCGAGGTCTACAGAAATCGACCTTTAATACGAGGCAATGGTTTTGAGTTCTGCAATATGTTGTACCATTCTCACTATACGGCTGCTATATTTATCTTCGCAATCCGTATCCAATTTGCTGTTATCTTGTCTCACGTTACTCCAATTCTTTATTTCTACTGATCTATTGTCTGACAATCTAGTGACACGATATTTGGGACTGTTCAGAACACTGATCAAGTGTTGTACCATCTTTATATACTTGAGATAGCACTTGTACTTTCTTGAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7743#0 CTCCCATGCCGCCGCCTCTTGCCTTGGAAGGGAGGAAAGAAGCGAAGAGAAGAGAGAGCT 60
consensus_7743#2 ------------------------------------------------------------
consensus_7743#1 ------------------------------------------------------------
consensus_7743#0 AGCGGCGGCGGCGGCGGCGGCGGCGAGGCAGCTGGTTGTTTGTTGTTGGTTCCCTCTCCA 120
consensus_7743#2 ------------------------------------------------------------
consensus_7743#1 ------------------------------------------------------------
consensus_7743#0 CGGCGACCTCATTGCCTCTCCATCTCTCTCGAGAACCCTCCGCGCGGCGACCTAGCTCCA 180
consensus_7743#2 ------------------------------------------------------------
consensus_7743#1 ------------------------------------------------------------
consensus_7743#0 CCGTCATCGCAGAGGAGGGGGGATTAGGCTGTAGTAGTGTGAGATGGCTTCGCCGGAGCC 240
consensus_7743#2 ------------------------------------------------------------
consensus_7743#1 ------------------------------------------------------------
consensus_7743#0 GGCCGCGGGGGCGGACGGCGCTTCGGCTAGCCAGACGGCCGTGGTGGAGCCGATCCGGTT 300
consensus_7743#2 ------------------------------------------------------------
consensus_7743#1 ------------------------------------------------------------
consensus_7743#0 GCCGACGCCGGAGGAGATCAAGGGGCAGGACATCTGGAACAACTGCGCCGTCCGCAGCGT 360
consensus_7743#2 ------------------------------------------------------------
consensus_7743#1 ------------------------------------------------------------
consensus_7743#0 CGTCAGTGGAGTCATGGGGGGTGGTTTAGGCGTGCTTATGGGGCTATTCTTTGGAGCTTT 420
consensus_7743#2 ------------------------------------------------------------
consensus_7743#1 -----------------------------------------------TCTTTGGAGCTTT 13
consensus_7743#0 GGAAAACCCAATTACAGCAGAGGAGATGACAGCAAGACAACAAATAGTATACCAAGCTAA 480
consensus_7743#2 ------------------------------------------------------------
consensus_7743#1 GGAAAACCCAATTCCAGCAGGGGAGATGCCAGCAAGCCACCAAATAGTATATCAAGCTAA 73
consensus_7743#0 ACAGATGGGTAGGCGAAGTATAAGCAATGCCAAAACCTTTGCAGTCATGGGCCTGATTTT 540
consensus_7743#2 ------------------------------------------------------------
consensus_7743#1 ACAGAGGGGTAGGCGAAGTATAAGCAATGCCAAAACCTTTGCAGTCATGGGCCTGATTTT 133
consensus_7743#0 CTCTGCCGCTGAATGTGTCATAGAGAAGGCTCGCGCAAAGCATGACACTACCAATTCAGC 600
consensus_7743#2 ------------------------------------------------------------
consensus_7743#1 CTCTGCCGCTGAATGTGTTATAGAGAAGGCTCGCGCAAAGCATGACACTACCAATTTAGC 193
consensus_7743#0 GGTGGCTGGCTGTGTCACAGGAGGGGCTTTAGCTGCAAAAGGTGGTCCTAAAGCTACATG 660
consensus_7743#2 -GTGGCTGGCTGTGTCACAGGAGGGGCTTTAGCTGCAAAAGGTGGTCCTAAAGCTACATG 59
consensus_7743#1 GGTGGCTGGCTGTGTCACAGGAGGGGCTTTAGCTGCAAAAGGTGGTCCTAAAGCTACATG 253
***********************************************************
consensus_7743#0 TGTTGGATGTGTGGGGTTTGCCACCTTCTCGGTAATGATTGAGAAGTTCTTGGATCGTCA 720
consensus_7743#2 TGTTGGATGTGTGGGGTTTGTCACCTTCTCGGTAATGATTGAGAAGTTCTTGGATCGTCA 119
consensus_7743#1 TGTTGGATGTGTGGGGTTTGCCACCTTCTCGGTAATGATTGAGAAGTTCTTGGATCGTCA 313
******************** ***************************************
consensus_7743#0 TTCTTGAATCATTGGTGGAAACATTTTATCGCCTTATTCGCCGTTAATTTCAAGTGAAGC 780
consensus_7743#2 TTCTTGAATCATTGGTGGAAACATTTTATCGCCTTATTCGCCGTTAATTTCAAGTGAAGC 179
consensus_7743#1 TTCTTGAATCATTGGTGGAAACATTTTATCGCCTTATTTGCCGTTAATTTCAAGTGAAGC 373
************************************** *********************
consensus_7743#0 TTTTTGTAGCAGGTTAGCAACCAAGAGGTGGATTCAGCATCCAAAACAACCTTTAGTCAT 840
consensus_7743#2 TTTTTGTAGCAG------------------------------------------------ 191
consensus_7743#1 TTTTTGTAGCAGGTTAGCAACCAAGAGGTGGATTCAGCATCCAAAACAACCTTTAGTCAT 433
************
consensus_7743#0 TTTAAGACATTCACTCATTGACATGTCTTCTGAGGTCTTGCAGACCAAGATTTTGTTATT 900
consensus_7743#2 -------------------------------------------ACCAAGATTTTGTTATT 208
consensus_7743#1 TTTAAGACATTCACTCATTGACATGTTTTTTGAGGTCTTGCAGAGCAAGATTTTGTTATT 493
* ***************
consensus_7743#0 TTACGAGTGTTACCCAACATGGTAGGCATAACTGGAGTAACTGCGAGGTCTACAGAAATC 960
consensus_7743#2 TTACGAGTGTTACCCAACATGGTAGGCATAACTGGAGTAACTGCGAGGTCTACAGAAATC 268
consensus_7743#1 TTACGAGTGTTACCCAACATTGTAGGCATAACTGGAGTAACTGCGAGGTTTACATAAATC 553
******************** **************************** **** *****
consensus_7743#0 GACCTTTAATACGAGGCAATGGTTTTGAGTTCTGCAATATGTTGTATCATTCTCACTATA 1020
consensus_7743#2 GACCTTTAATACGAGGCAATGGTTTTGAGTTCTGCAATATGTTGTACCATTCTCACTATA 328
consensus_7743#1 GACCTTTAATACGAGGCAATGGTTTTGAGTTTTGCAATATGTTGTATCATTCTCACTATA 613
******************************* ************** *************
consensus_7743#0 CGGCTGCTATATTTATCTTCGCAATCCGTATCCAATTTGCTGTTATCTTGTCTCACGTTA 1080
consensus_7743#2 CGGCTGCTATATTTATCTTCGCAATCCGTATCCAATTTGCTGTTATCTTGTCTCACGTTA 388
consensus_7743#1 CGGGTGCTATATTTATTTTCGCAATCCGTATCCAATTTGCTGTTAAAAAAAAAAAAAAAA 673
*** ************ **************************** * *
consensus_7743#0 CTCCAATTCTTTATTTCTACTGATCTATTGTCTGACAATCTAGTGGCACGATATTTGGGA 1140
consensus_7743#2 CTCCAATTCTTTATTTCTACTGATCTATTGTCTGACAATCTAGTGACACGATATTTGGGA 448
consensus_7743#1 AAA--------------------------------------------------------- 676
consensus_7743#0 CTGTTCAGAACACTGATCAAGTGTTGTACCATCTTTATATACTTGAGATAGCA------- 1193
consensus_7743#2 CTGTTCAGAACACTGATCAAGTGTTGTACCATCTTTATATACTTGAGATAGCACTTGTAC 508
consensus_7743#1 ------------------------------------------------------------
consensus_7743#0 -------------
consensus_7743#2 TTTCTTGAAAAAA 521
consensus_7743#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||