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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7744#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 912 fasta sequence
[GTGAGTGAGGATTTCTCAAACTTCATTTATTTTCCATCACTGGGAGGTGTTGAAGCTTAATCATGAGCTCTCGTCGTGTGAAGTGGAATGAAGACAACCTGTATGAGATTGAATCAAATAAACCTGTTAGGCAGAAGATAACTGAGCCTAAGACACCATATCACCCTATGGTAGATGATGATGGGTCATTGTCACCAACGCGTCCTTTTGACAAGTGTCTGGATGAGACTGTTAATGCTGAAGCTATTTTAACTGCTTTAAATGGTGTGGCTTCTTCAAGCAAAACTGATCCAAAGGATGATGGTTGGGCATCCTCAGATGATGATGCAGATGCCATGGAACAAGATGATGATCCAGAAGCTGAAAAGTCAAGACTGAGTTTCAA-GGAACA-TCGTCGTGCTCACTATGATGAATTCCTCAAGGTGAAGGAGCTGATGCGCTCCGGATCGCTGATTGACGATGAGGCTGATGAGGATGATAGAGGTGCAAAAGGCAGCCAAGCCAAAGCTGTAGGAAAGAAGCCAGCAGGCTGTGACAGCACACCCCCACCGCAAACATGAAGCAATGAAGTTACCGTTCCTTTTTCCCTGTTGTTTGCTAAGCTAGGAAAAGCTCAACATAGCAGAAGCATGTGGTTTGTCTAAATTGTGTGAAGCATGCTTTGCCTGTGTGTTAGATCCTTGTATTCAAAATCAGATGTGCATCCTGTAAACGACGCATGCCATTCATCTTCCCTTTGTGTTTAAGATCTTGATGTACCTAGAATGGCTTTGATTTAGTTTGAGTTGCCTAGCTACATTTACTTGCTGAACGGTGAGCTCCTTTGCATGTTCATTTGAGACTATTTATCAAGAGCTGATACTCAAACCACATA-TTGGATAAGGCCAGATATGGCAAGATATGGCCTTGATT]
[+] EMBL AK073928 [GTGAGTGAGGATTTCTCAAACTTCATTTATTTTCCATCACTGGGAGGTGTTGAAGCTTAATCATGAGCTCTCGTCGTGTGAAGTGGAATGAAGACAACCTGTATGAGATTGAATCAAATAAACCTGTTAGGCAGAAGATAACTGAGCCTAAGACACCATATCACCCTATGGTAGATGATGATGGGTCATTGTCACCAACGCGTCCTTTTGACAAGTGTCTGGATGAGACTGTTAATGCTGAAGCTATTTTAACTGCTTTAAATGGTGTGGCTTCTTCAAGCAAAACTGATCCAAAGGATGATGGTTGGGCATCCTCAGATGATGATGCAGATGCCATGGAACAAGATGATGATCCAGAAGCTGAAAAGTCAAGACTGAGTTTCAA GGAACA TCGTCGTGCTCACTATGATGAATTCCTCAAGGTGAAGGAGCTGATGCGCTCCGGATCGCTGATTGACGATGAGGCTGATGAGGATGATAGAGGTGCAAAAGGCAGCCAAGCCAAAGCTGTAGGAAAGAAGCCAGCAGGCTGTGACAGCACACCCCCACCGCAAACATGAAGCAATGAAGTTACCGTTCCTTTTTCCCTGTTGTTTGCTAAGCTAGGAAAAGCTCAACATAGCAGAAGCATGTGGTTTGTCTAAATTGTGTGAAGCATGCTTTGCCTGTGTGTTAGATCCTTGTATTCAAAATCAGATGTGCATCCTGTAAACGACGCATGCCATTCATCTTCCCTTTGTGTTTAAGATCTTGATGTACCTAGAATGGCTTTGATTTAGTTTGAGTTGCCTAGCTACATTTACTTGCTGAACGGTGAGCTCCTTTGCATGTTCATTTGAGACTATTTATCAAGAGCTGATACTCAAACCACATA TTGGATAAGGCCAGATATGGCAAGATATGGCCTTGATT]
[+] EMBL CA998252 [GTGAGTGAGGATTTCTCAAACTTCATTTATTTTCCATCACTGGGAGGTGTTGAAGCTTAATCATGAGCTCTCGTCGTGTGAAGTGGAATGAAGACAACCTGTATGAGATTGAATCAAATAAACCTGTTAGGCAGAAGATAACTGAGCCTAAGACACCATATCACCCTATGGTAGATGATGATGGGTCATTGTCACCAACGCGTCCTTTTGACAAGTGTCTGGATGAGACTGTTAATGCTGAAGCTATTTTAACTGCTTTAAATGGTGTGGCTTCTTCAAGCAAAACTGATCCAAAGGATGATGGTTGGGCATCCTCAGATGATGATGCAGATGCCATGGAACAAGATGATGATCCAGAAGCTGAAAAGTCAAGACTGAGTTTCAA GGAACA TCGTCGTGCTCACTATGATGAATTCCTCAAGGTGAAGGAGCTGATGCGCTCCGGATCGCTGATTGACGATGAGGCTGATGAGGATGATAGAGGTGCAAAAGGCAGCCc ]
[+] EMBL BI813763 [ TGAGTTTCAAGGGAACATTCGTCGTGCTCACTATGATGAATTCCTCAAGGTGAAGGA CTGATGCGCTCCGGATCGCTGATTGACGATGAGGCTGATGAGGATGATAGAGGTGCAAAAGGCAGCCAAGCC AAGCTGTAGGAAAGAAGCCAGCAGGCTGTGACAGCACACCCCCACCGCAAACATGAAGC ATGAAGTTACCGTTCCTTTTTCCCTGTTGTTTGCTAAGCTAGGAAAAGCTCAACATAGCAGAAGCATGTGGTTTGTCTAAATTGTGTGAAGCATGCTTTGCCTGTGTGTTAGATCCTTGTATTCAAAATCAGATGTGCATCCTGTAAACGACGCATGCCATTCATCTTCCCTTTGTGTTTAAGATCTTGATGTACCTAGAATGGCTTTGATTTAGTTTGAGTTGCCTAGCTACATTTACTTGCTGAACGGTGAGCTCCTTTGCATGTTCATTTGAGACTATTTATCAAGAGCTGATACTCAAACCACATATTTGGATAAaaaaaaaa ]
consensusID : consensus_7744#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence
[TGATCCAAAGGATGATGGTTGGGCATCCTCAGATGATGATGCAGATGCCATGGAACAAGATGATGATCCAGAAGCTGAAAAGTCAAGACTGAGTTTCAAGGAACATCGTCGTGCTCACTATGATGAATTCCTCAAGGTGAAGGAGCTGATGCGCTCCGGATCGCTGATTGACGATGAGGCTGATGAGGATGATAGAGGTGCAAAAGGCAGCCAAGCCAAAGCTGTAGGAAAGAAGCCAGCAGGCTGTGACAGCACACCCNNCCACCGCAAACATGAAGCAATGAAGTTACCGTTCCTTTTTCCCTGTTGTTTGCTAAGCTAGGAAAAGCTCAACATAGCAGAAGCATGTGGTTTGTCTAAATTGTGTGAAGCATGCTTTGCCTGTGTGTTAGATCCTTGTATTCAAAATCAGATGTGCATCCTGTAAACGACGCATGCCATTCATCTTCCCTTTGTGTTTAAGATCTTGATGTACCTAGAATGGCTTTGATTTAGTTTGAGTTGCCTAGCTACATTTACTTAATGAACGGTGAGCTCCTTTGCATGTTCATTTGAGACTATTTATCAAGAGCTGATACTCAAACCAAAAAAAAAAAAAAAAAACT]
[-] EMBL CF325208 [TGATCCAAAGGATGATGGTTGGGCATCCTCAGATGATGATGCAGATGCCATGGAACAAGATGATGATCCAGAAGCTGAAAAGTCAAGACTGAGTTTCAAGGAACATCGTCGTGCTCACTATGATGAATTCCTCAAGGTGAAGGAGCTGATGCGCTCCGGATCGCTGATTGACGATGAGGCTGATGAGGATGATAGAGGTGCAAAAGGCAGCCAAGCCAAAGCTGTAGGAAAGAAGCCAGCAGGCTGTGACAGCACACCCNNCCACCGCAAACATGAAGCAATGAAGTTACCGTTCCTTTTTCCCTGTTGTTTGCTAAGCTAGGAAAAGCTCAACATAGCAGAAGCATGTGGTTTGTCTAAATTGTGTGAAGCATGCTTTGCCTGTGTGTTAGATCCTTGTATTCAAAATCAGATGTGCATCCTGTAAACGACGCATGCCATTCATCTTCCCTTTGTGTTTAAGATCTTGATGTACCTAGAATGGCTTTGATTTAGTTTGAGTTGCCTAGCTACATTTACTTAATGAACGGTGAGCTCCTTTGCATGTTCATTTGAGACTATTTATCAAGAGCTGATACTCAAACCAAAAAAAAAAAAAAAAAACT]
consensusID : consensus_7744#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence
[CCTGGACTGAAGGAGTAGAAATGAGATTGAATCAAATAAACCTGTTAGGCAGAAGATAACTGAGCCTAAGACACCATATCACCCTATGGTAGATGATGATGGGTCATTGTCACCAACGCGTCCTTTTGACAAGTGTCTGGATGAGACTGTTAATGCTGAAGCTATTTTAACTGCTTTAAATGGTGTGGCTTCTTCAAGCAAAACTGATCCAAAGGATGATGGTTGGGCATCCTCAGATGATGATGCAGATGCCATGGAACAAGATGATGGTTGTGCCTCTTACCCTGTTCCCATTTTCATATATCTACCCTGCATGTAGTAATTTGCTCTTATATTTTCCCTGTTTCAGTTAAATGCATTTGAAGACATCTTGTTTTTGATGGAAAAATTAATTAATTGATTATCAGGAAATTACATGAATATGTCTGAAAAGTCTTGTCATTGGATAAGTAGCGCAAATCTTACTGGAAGTTATAGTATGTTAACATTNTGTAATAGTAAAGCACATACACCGACCAAACCCTTAGCATTGCTCTACTAAAGCAACGTAC]
[+] EMBL CF310880 [CCTGGACTGAAGGAGTAGAAATGAGATTGAATCAAATAAACCTGTTAGGCAGAAGATAACTGAGCCTAAGACACCATATCACCCTATGGTAGATGATGATGGGTCATTGTCACCAACGCGTCCTTTTGACAAGTGTCTGGATGAGACTGTTAATGCTGAAGCTATTTTAACTGCTTTAAATGGTGTGGCTTCTTCAAGCAAAACTGATCCAAAGGATGATGGTTGGGCATCCTCAGATGATGATGCAGATGCCATGGAACAAGATGATGGTTGTGCCTCTTACCCTGTTCCCATTTTCATATATCTACCCTGCATGTAGTAATTTGCTCTTATATTTTCCCTGTTTCAGTTAAATGCATTTGAAGACATCTTGTTTTTGATGGAAAAATTAATTAATTGATTATCAGGAAATTACATGAATATGTCTGAAAAGTCTTGTCATTGGATAAGTAGCGCAAATCTTACTGGAAGTTATAGTATGTTAACATTNTGTAATAGTAAAGCACATACACCGACCAAACCCTTAGCATTGCTCTACTAAAGCAACGTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7744#0 GTGAGTGAGGATTTCTCAAACTTCATTTATTTTCCATCACTGGGAGGTGTTGAAGCTTAA 60
consensus_7744#1 ------------------------------------------------------------
consensus_7744#2 ------------------------------------------------------------
consensus_7744#0 TCATGAGCTCTCGTCGTGTGAAGTGGAATGAAGACAACCTGTATGAGATTGAATCAAATA 120
consensus_7744#1 ------------------------------------------------------------
consensus_7744#2 ------------------------------------------------------------
consensus_7744#0 AACCTGTTAGGCAGAAGATAACTGAGCCTAAGACACCATATCACCCTATGGTAGATGATG 180
consensus_7744#1 ------------------------------------------------------------
consensus_7744#2 ------------------------------------------------------------
consensus_7744#0 ATGGGTCATTGTCACCAACGCGTCCTTTTGACAAGTGTCTGGATGAGACTGTTAATGCTG 240
consensus_7744#1 ------------------------------------------------------------
consensus_7744#2 ------------------------------------------------------------
consensus_7744#0 AAGCTATTTTAACTGCTTTAAATGGTGTGGCTTCTTCAAGCAAAACTGATCCAAAGGATG 300
consensus_7744#1 ----------------------------------------------TGATCCAAAGGATG 14
consensus_7744#2 --------------------------------------------CCTGGACTGAAGGAGT 16
** * *****
consensus_7744#0 ATGGTTGGGCATCCTCAGATGATGATGCAGATGCCATGGAACAAGATGATGATCCAGAAG 360
consensus_7744#1 ATGGTTGGGCATCCTCAGATGATGATGCAGATGCCATGGAACAAGATGATGATCCAGAAG 74
consensus_7744#2 AGAAATGAG----ATTGAATCA-AATAAACCTGTTA-GGCAGAAGATAA-----CTGAGC 65
* ** * * ** * ** * ** * ** * ***** * * **
consensus_7744#0 CTGAAAAGTCAAGACTGAGTTTCAAGGAACATCGTCGTGC-TCACTATGATGAATTCCTC 419
consensus_7744#1 CTGAAAAGTCAAGACTGAGTTTCAAGGAACATCGTCGTGC-TCACTATGATGAATTCCTC 133
consensus_7744#2 CTAAGACACCATATC---ACCCTATGGTAGATGATGATGGGTCATTGTCACCAACGCGTC 122
** * * ** * * ** * ** * ** *** * * * ** * **
consensus_7744#0 AAGGTGAAGGAGCTGATGCGCTCCGGATC-GCTGATTGACGATGAGGCTGATGAGGATGA 478
consensus_7744#1 AAGGTGAAGGAGCTGATGCGCTCCGGATC-GCTGATTGACGATGAGGCTGATGAGGATGA 192
consensus_7744#2 CTTTTGA-----CAAGTG---TCTGGATGAGACTGTTAATGCTGAAGCTATTTTAACTGC 174
*** * ** ** **** * ** * * *** *** * **
consensus_7744#0 TAGAGGTGCAAAAGGCAGCCAAGCCAAAGCTG-TAGGAAAGAAGCCAGCAGGCTGTGACA 537
consensus_7744#1 TAGAGGTGCAAAAGGCAGCCAAGCCAAAGCTG-TAGGAAAGAAGCCAGCAGGCTGTGACA 251
consensus_7744#2 TTTAAATGGTGTGGCTTCTTCAAGCAAAACTGATCCAAAGGATGATGGTTGG--GCATCC 232
* * ** * * **** *** * ** ** * * ** * *
consensus_7744#0 GCACACCCCC--ACCGCAAACATGAAGCAATGAAGTTACCGTTCCTTTTTCCCTGTTGTT 595
consensus_7744#1 GCACACCCNNCCACCGCAAACATGAAGCAATGAAGTTACCGTTCCTTTTTCCCTGTTGTT 311
consensus_7744#2 TCAGATGATGATGCAGATGCCATGGAACAAGATGATGGTTGTGCCTCTTACCCTGTTCCC 292
** * * * **** * *** * ** *** ** *******
consensus_7744#0 TGCTAAGCTAGGAAAAGCTCAACATAGCAGAAGCATGTGGTTTGTCTAAATTGTGTGAAG 655
consensus_7744#1 TGCTAAGCTAGGAAAAGCTCAACATAGCAGAAGCATGTGGTTTGTCTAAATTGTGTGAAG 371
consensus_7744#2 ------ATTTTCATATATCTACCCTGCATGTAGTAATTTGCTCTTATATTTTCCCTGTTT 346
* * * * * * * ** * * * * * ** ** **
consensus_7744#0 CATGCTTTGCCTGTGTGTTAGATCCTTGTATTCAAAATCAGATGTGCATCCTGTAAACGA 715
consensus_7744#1 CATGCTTTGCCTGTGTGTTAGATCCTTGTATTCAAAATCAGATGTGCATCCTGTAAACGA 431
consensus_7744#2 CAG---TTAAATGCATTTGAAGACATCTTGTTTTTGATGGAAAAATTAATTAATTGATTA 403
** ** ** * * * * * * ** ** * * * * *
consensus_7744#0 CGCATGCCATTCATCTTCCCTTTGTGTTTAAGATCTTGATGTACCTAGAATGGCTTTGAT 775
consensus_7744#1 CGCATGCCATTCATCTTCCCTTTGTGTTTAAGATCTTGATGTACCTAGAATGGCTTTGAT 491
consensus_7744#2 T-CAGGAAATT--ACATGAATATGTCTGAAAAGTCTTGTCATTGGATAAGTAGCGCAAAT 460
** * *** * * * *** * ** ***** * * * ** **
consensus_7744#0 TTAGTTTGAGTTGCCTAGCTACATTTACTTGCTG-AACGGTGAGCTCCTTTGCATGTTCA 834
consensus_7744#1 TTAGTTTGAGTTGCCTAGCTACATTTACTTAATG-AACGGTGAGCTCCTTTGCATGTTCA 550
consensus_7744#2 CTTACTGGAAGT-TATAG-TATGTTAACATTNTGTAATAGTAAA-------GCACATACA 511
* * ** * *** ** ** ** * ** ** ** * *** * **
consensus_7744#0 TTTGAGACTATTTATCAAGAGCTGATACTCAAACCACATATTGGATAAGGCCAGATATGG 894
consensus_7744#1 TTTGAGACTATTTATCAAGAGCTGATACTCAAACCAAAAAAAAAAAAAAAAAACT----- 605
consensus_7744#2 CC---GACCAAACCCTTAGCATTGCTCTACTAAAGCAACGTAC----------------- 551
*** * ** ** * * ** *
consensus_7744#0 CAAGATATGGCCTTGATT 912
consensus_7744#1 ------------------
consensus_7744#2 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||