These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7746#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 807 fasta sequence [ACGAGCTGCCTCCTGCCAGTCGATCATGGCGGCCGCATCCTTCTGTTCCAAACGATCTCTCCCATGCCTACTGCTCATATTAGCCGTCTTCTTCCTCGGTTGCTCGTCGCCGGCGACGGCCCGCCGCGTCACCGAGGGCGAACCGGCGACGACGACGACGATGGTGGAGAGGTTCCGGCGGTGGAAGGCGGAGTACAACCGGTCGTACGCCACGGCGGGGGAGGAGCGCCGCCGGCTCCGGGTGTACGCGCGCAACGTGCGGTACATCGAGGCGACGAACGCGGCGGCGGGGCTCGCGTACGAGCTCGGCGAGACGGCCTACACCGACCTCACCAACGACGAGTTCATCGCCATGTACACCGCGCCGCCGCCGCTGCGGTCGTCAGACGGCGACGACGACGACGCGGCGACGACGATCATCACCACGCGCGCCGGGCCGGTGGACGAACACAACCTGCAGCCGGAGGTGTACTTCAACGAGTCCGCCGGCGCGCCGGCGAGCGTTGACTGGCGGGCGAGCGGCGCCGTGACGGAGGTGAAGGACCAAGGGCGATGTGGATCGTGCTGGGCGTTCTCGACGGTGGCGGT-GGTGGAGGGGATACAGAAGATCAAGAAGGGGAAGCTGGTGTCACTGTCGGAGCAGGAGCTGGTCGACTGCGACACGCTCGACAGCGGCTGCGACGGCGGCGTCAGCTACCGGGCGCTGGAGTGGATCACCGCCAACGGCGGCATCACCACCCGCGACGACTACCCCTACACGGCCGCCGCCTCCGCCGCCTGCGACCGCGCCAAGCTGGGGCCACACGC] [+] EMBL CB645294 [ACGAGCTGCCTCCTGCCAGTCGATCATGGCGGCCGCATCCTTCTGTTCCAAACGATCTCTCCCATGCCTACTGCTCATATTAGCCGTCTTCTTCCTCGGTTGCTCGTCGCCGGCGACGGCCCGCCGCGTCACCGAGGGCGAACCGGCGACGACGACGACGATGGTGGAGAGGTTCCGGCGGTGGAAGGCGGAGTACAACCGGTCGTACGCCACGGCGGGGGAGGAGCGCCGCCGGCTCCGGGTGTACGCGCGCAACGTGCGGTACATCGAGGCGACGAACGCGGCGGCGGGGCTCGCGTACGAGCTCGGCGAGACGGCCTACACCGACCTCACCAACGACGAGTTCATCGCCATGTACACCGCGCCGCCGCCGCTGCGGTCGTCAGACGGCGACGACGACGACGCGGCGACGACGATCATCACCACGCGCGCCGGGCCGGTGGACGAACACAACCTGCAGCCGGAGGTGTACTTCAACGAGTCCGCCGGCGCGCCGGCGAGCGTTGACTGGCGGGCGAGCGGCGCCGTGACGGAGGTGAAGGACCAAGGGCGATGTGGATCGTGCTGGGCGTTCTCGACGGTGGCGGT GGTGGAGGGGATACAGAAGATCAAGAAGGGGAAGCTGGTGTCACTGTCGGAGCAGGAGCTGGTCGACTGCGACACGCTCGACAGCGGCTGCGACGGCGGCGTCAGCTACCGGGCGCTGGAGTGGATCACCGCCAACGGCGGCATCACCACCCGCGACGACTACCCCTACACGGCCGCCGCCTCCGCCGCCTGCGACCGCGCCAAGCTGGGGCCACACGC] [+] EMBL CB645335 [ACGCGCTGCCTCCTGCCAGTCGATCATGGCGGCCGCATCCTTCTGTTCCAAACGATCTCTCCCATGCCTACTGCTCATATTAGCCGTCTTCTTCCTCGGTTGCTCGTCGCCGGCGACGGCCCGCCGCGTCACCGAGGGCGAACCGGCGACGACGACGACGATGGTGGAGAGGTTCCGGCGGTGGAAGGCGGAGTACAACCGGTCGTACGCCACGGCGGGGGAGGAGCGCCGCCGGCTCCGGGTGTACGCGCGCAACGTGCGGTACATCGAGGCGACGAACGCGGCGGCGGGGCTCGCGTACGAGCTCGGCGAGACGGCCTACACCGACCTCACCAACGACGAGTTCATCGCCATGTACACCGCGCCGCCGCCGCTGCGGTCGTCAGACGGCGACGACGACGACGCGGCGACGACGATCATCACCACGCGCGCCGGGCCGGTGGACGAACACAACCTGCAGCCGGAGGTGTACTTCAACGAGTCCGCCGGCGCGCCGGCGAGCGTTGACTGGCGGGCGAGCGGCGCCGTGACGGAGGTGAAGGACCAAGGGCGATGTGGATCGTGCTGGGCGTTCTCGACGGTGGCGGT GGTGGAGGGGATACAGAAGATCAAGAAGGGGAA ] [+] EMBL CA754531 [ ATCCTTCTGTTCCAAACGATCTCTCCCATGCCTACTGCTCATATTAGCCGTCTTCTTCCTCGGTTGCTCGTCGCCGGCGACGGCCCGCCGCGTCACCGAGGGCGAACCGGCGACGACGACGACGATGGTGGAGAGGTTCCGGCGGTGGAAGGCGGAGTACAACCGGTCGTACGCCACGGCGGGGGAGGAGCGCCGCCGGCTCCGGGTGTACGCGCGCAACGTGCGGTACATCGAGGCGACGAACGCGGCGGCGGGGCTCGCGTACGAGCTCGGCGAGACGGCCTACACCGACCTCACCAACGACGAGTTCATCGCCATGTACACCGCGCCGCCGCCGCTGCGGTCGTCAGACGGCGACGACGACGACGCGGCGACGACGATCATCACCACGCGCGCCGGGCCGGTGGACGAACACAACCTGCAGCCGGAGGTGTACTTCAACGAGTCCGCCGGCGCGCCGGCGAGCGTTGACTGGCGGGCGAGCGGCGCCGTGACGGAGGTGAAGGACCCAGGGCGATGTGGATCGTGCTGGGCGTTCTCCACGGT GCGGTGGGTGGAGGGGATACAGAAGATCAAGAAGGGGAAGCTGGTGTCACTGTCGGAGCA GAGCT ] consensusID : consensus_7746#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 760 fasta sequence [TCATGGCTGCCGCATCCTTCTGTTCCAAACGATCTCTCCCATGCCTACTGCTCATATTAGCCGTCTTCTTCCTCGGTTGCTCGTCGCCGGCGACGGCCCGCCGC---GTCACCGA--G-GGCGAACCGGCGACGACGACGACGATGGTGGAGAGGTTCCGGCGGTGGAAGGCGGAGTACAACCGGTCGTACGCCACGGCGGGGGAGGAGCGCCGCCGGCTCCGGGTGTACGCGCGCAACGTGCGGTACATCGAGGCGACGAACGCGGCGGCGGGGCTCGCGTACGAGCTCGGCGAGACGGCCTACACCGACCTCACCAACGACGAGTTCATCGCCATGTACACCGCGCCGCCGCCGCTGCGGTCGTCAGACGGCGACGACGACGACGCGGCGACGACGATCATCACCACGCGCGCCGGGCCGGTGGACGAACACAACCTGCAGCCGGAGGTGTACTTCAACGAGTCCGCCGGCGCGCCGGCGAGCGTTGACTGGCGGGCGAGCGGCGCCGTGACGGAGGTGAAGGACCAAGGGCGATGTGGTACGCACTACTCCAGCTAGCTAACACGTCAACCTCTCAATTATTTCATTTTTTAGATAATAATAAACTCTCAATTATTTGTGACCTCTCTGTAAACACATGGCTCGCTACTAACCACATGTGCCCCCTGTCTCTTTCATTATGCGACCCAAATGCATAATAATAATACTCCCTTTCTCTCTGTTTTTTCATAAAGTTTTATTTTTCGTTTAATTCGAATCTAGCA] [+] EMBL CB650322 [TCATGGCTGCCGCATCCTTCTGTTCCAAACGATCTCTCCCATGCCTACTGCTCATATTAGCCGTCTTCTTCCTCGGTTGCTCGTCGCCGGCGACGGCCCGCCGC GTCACCGA G GGCGAACCGGCGACGACGACGACGATGGTGGAGAGGTTCCGGCGGTGGAAGGCGGAGTACAACCGGTCGTACGCCACGGCGGGGGAGGAGCGCCGCCGGCTCCGGGTGTACGCGCGCAACGTGCGGTACATCGAGGCGACGAACGCGGCGGCGGGGCTCGCGTACGAGCTCGGCGAGACGGCCTACACCGACCTCACCAACGACGAGTTCATCGCCATGTACACCGCGCCGCCGCCGCTGCGGTCGTCAGACGGCGACGACGACGACGCGGCGACGACGATCATCACCACGCGCGCCGGGCCGGTGGACGAACACAACCTGCAGCCGGAGGTGTACTTCAACGAGTCCGCCGGCGCGCCGGCGAGCGTTGACTGGCGGGCGAGCGGCGCCGTGACGGAGGTGAAGGACCAAGGGCGATGTGGTACGCACTACTCCAGCTAGCTAACACGTCAACCTCTCAATTATTTCATTTTTTAGATAATAATAAACTCTCAATTATTTGTGACCTCTCTGTAAACACATGGCTCGCTACTAACCACATGTGCCCCCTGTCTCTTTCATTATGCGACCCAAATGCATAATAATAATACTCCCTTTCTCTCTGTTTTTTCATAAAGTTTTATTTTTCGTTTAATTCGAATCTAGCA] [-] EMBL BI810472 [ TGTTCCAAACGATCTCTCCCATGCCTACTGCTCGTACTAGCCGTCTTCTTCCTCGGTTGCTCGTCGTCGGCGACGGCCCGTCGCGTTGTCACCGACGGCGGCGAACCGG CGACGACGACGATGGTGGAGAGGTTCCAGCGGTGGAAGGCGGAGTACAACCGGTCGTACGCCACGCCCGGGGAGGAGCGCCGCCGGCTCCGGGTGTACGCGCGCAACGTGCGGTACATCGAGGCGACGAACGCGGCGGCGGGGCTCGCGTACGAGCTCGGCGAGACGGCCTACACCGACCTCACCAACGACGAGTTCATTGCCATGTACACCGCGCCGCCGCCGCTGCGGTCGTCAGACGGCGACGACGACGACGCGGCGACGACGATCATCACCACGCGCGCCGGGCCGGTGGACGAACACAACCTGCAGCCGGAGGTGTACTTCAACGAGTCCG CGGCGCGCCGGCGAGCGTTGACTGGCGGGCGAGCGGCGCCGTGACGGAGGTGAAGGACCAAGGGCGATGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7746#0 ACGAGCTGCCTCCTGCCAGTCGATCATGGCGGCCGCATCCTTCTGTTCCAAACGATCTCT 60 consensus_7746#1 -----------------------TCATGGCTGCCGCATCCTTCTGTTCCAAACGATCTCT 37 ******* ***************************** consensus_7746#0 CCCATGCCTACTGCTCATATTAGCCGTCTTCTTCCTCGGTTGCTCGTCGCCGGCGACGGC 120 consensus_7746#1 CCCATGCCTACTGCTCATATTAGCCGTCTTCTTCCTCGGTTGCTCGTCGCCGGCGACGGC 97 ************************************************************ consensus_7746#0 CCGCCGCGTCACCGAGGGCGAACCGGCGACGACGACGACGATGGTGGAGAGGTTCCGGCG 180 consensus_7746#1 CCGCCGCGTCACCGAGGGCGAACCGGCGACGACGACGACGATGGTGGAGAGGTTCCGGCG 157 ************************************************************ consensus_7746#0 GTGGAAGGCGGAGTACAACCGGTCGTACGCCACGGCGGGGGAGGAGCGCCGCCGGCTCCG 240 consensus_7746#1 GTGGAAGGCGGAGTACAACCGGTCGTACGCCACGGCGGGGGAGGAGCGCCGCCGGCTCCG 217 ************************************************************ consensus_7746#0 GGTGTACGCGCGCAACGTGCGGTACATCGAGGCGACGAACGCGGCGGCGGGGCTCGCGTA 300 consensus_7746#1 GGTGTACGCGCGCAACGTGCGGTACATCGAGGCGACGAACGCGGCGGCGGGGCTCGCGTA 277 ************************************************************ consensus_7746#0 CGAGCTCGGCGAGACGGCCTACACCGACCTCACCAACGACGAGTTCATCGCCATGTACAC 360 consensus_7746#1 CGAGCTCGGCGAGACGGCCTACACCGACCTCACCAACGACGAGTTCATCGCCATGTACAC 337 ************************************************************ consensus_7746#0 CGCGCCGCCGCCGCTGCGGTCGTCAGACGGCGACGACGACGACGCGGCGACGACGATCAT 420 consensus_7746#1 CGCGCCGCCGCCGCTGCGGTCGTCAGACGGCGACGACGACGACGCGGCGACGACGATCAT 397 ************************************************************ consensus_7746#0 CACCACGCGCGCCGGGCCGGTGGACGAACACAACCTGCAGCCGGAGGTGTACTTCAACGA 480 consensus_7746#1 CACCACGCGCGCCGGGCCGGTGGACGAACACAACCTGCAGCCGGAGGTGTACTTCAACGA 457 ************************************************************ consensus_7746#0 GTCCGCCGGCGCGCCGGCGAGCGTTGACTGGCGGGCGAGCGGCGCCGTGACGGAGGTGAA 540 consensus_7746#1 GTCCGCCGGCGCGCCGGCGAGCGTTGACTGGCGGGCGAGCGGCGCCGTGACGGAGGTGAA 517 ************************************************************ consensus_7746#0 GGACCAAGGGCGATGTGGATCGTGCTGGGC--GTTCTCGACGGTGGCGGTGGTGGAGGGG 598 consensus_7746#1 GGACCAAGGGCGATGTGGTACGCACTACTCCAGCTAGCTAACACGTCAACCTCTCAATTA 577 ****************** ** ** * * * * * * * * consensus_7746#0 ATACAGAAGATCAAGAAGGGGAAGCTGGTGTCACTGTCGGAGCAGGAGCTGGTCGACTGC 658 consensus_7746#1 TTTCATTTTTTAGATAATAATAAACT--CTCAATTATTTGTGACCTCTCTGTAAACACAT 635 * ** * * ** ** ** * * * * * *** consensus_7746#0 GACACGCTCGACAGCGGCTGCGACGGCGGCGTCAGCTACCGGGCG-CTGGAGTGGATCAC 717 consensus_7746#1 GGCTCGCTACTAACCACATGTGCCCCCTGTCTCTTTCATTATGCGACCCAAATGCAT--- 692 * * **** * * ** * * * * ** * *** * * ** ** consensus_7746#0 CGCCAACGGCGGCATCACCACCCGCGACGACTACCCCTACACGGCCGCCGCCTCCGCCGC 777 consensus_7746#1 ----AATAATAATACTCCCTTTCTCTCTGTTT--TTTCATAAAGTTTTATTTTTCGTTTA 746 ** * ** * * * * * * * * ** consensus_7746#0 CTGCGACCGCGCCAAGCTGGGGCCACACGC 807 consensus_7746#1 ATTCGAATCTAGCA---------------- 760 * *** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||