These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7757#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1442 fasta sequence [GCAACACTTGCACTGCAACCAGAAGCCAGCCACTACTCAGTAGGAGATTGGAGCTGAGAGCAGCAGCAGCAGCAGCAGCTAGGAAGATGAAGAGCCTGCAAGGTGAGGTCCACCTGAACATCCCTGCATCCAAGGCATGGGAGATGTTCACCAACAATGAGACCCTGGGCAAGATCAGCCCCGAAATGCTGTCGGGCGCCGAGTACCTTGAAGGAGATGGCAGCCCTGGCAGCCTCAGGATCTTCAAGCTAGGACCTGCACTTCATCACTTTGTCAAGGAATCTGTTCAGAAGGTTGAGAAGGTCGAGACAGGCCGGTCCTTCGGCTATGAAGTGGTCAGCGGTGAGCTGAAGGAGGTCTATGATCCCTACCATGTCACCTTCTCCTTCGCCCCCGTCCCGGGGAAGGAAGGCGAGCAGTGCGTCGCTGGGTGGAAGGCTGAGTTTGAGCCCATCACCCCCACTTCCCCGCCACCAGAGAAGGCCAAGGATGCCGCCCTCGGGTTTCTTAAATTGTTTGAGACTTGCGAAGCCACTAACTAGTAAAATGACAAAAGCTGTTGTCATCTTAATGAAGATAAGTATGAAGAAACCTATGGGTAGGACAGCGTATAGAGTACTAGGCTTGACATGTGTAATACCTGCCTAGTACCTTTCTGGAAGTGTGCTATGCCAAGTGCTATGTAATGTAATAACCCTGTACTAATTACTCTAGACCCAAAAAGGAGTCCATATAAGCTTCTTGTATATGTATGGCTGAAAATGAGATAATGTGTGTGAAGATTCTAGAAAAACAATCACAAATATCTTCATGGTATCAGAGCTTGGTCGCCAGCGACTGCGCCAAGGCTAAACCCTAGCTAGCGGTGGCTGTGGCTGGAGAAGCAGGGCGCACCGGCGGTGTATTGGCGTGTGGTGCTGGAGCTCCCGGCGAGGAAGCGAGCGTGTTGACGGTGGAGGTAGCGGTGGCTGCTGTGGTTGTGCTTGGAGGATTCCGACGTGGAGAGAAGAAGGTTTGGCTAGCAGGGAGCGCCAACGGAGACCGCGTGCACGGAGGGCAAGTTGGCGACGGCGTGTGGAGAGAAGAAGGTGCTGTTGCTTGCTGCCGTGTGAAGGTGCTGCTTGAGAAGGTGCAGCTGCTGCTTGCTGCTTGAGAAAGTGCTGCGGCTGCTGCTCGAGAAGGTGAGGATTTTCTGCTGCTGCTGCTGCTGAGAAGGTGAGGATTTGGTCAGATTGAGGTCTCACAGCAAGAAAAGAAGGGGAAGAGATTAACTTGTGGAGGCAAGAAGAAGGGATATAGCTGCTATTAACTTGCTGTAATAGGGAAAACCAAGGGATTGAATAGGTGATGGGTAAATTGGTAGATATGCTTGCTAAGAAATTTAGCGAGACATCTAATACCAGCCATGCGATTGTTTCTCATGTTGAATCAGTAAAACAATT] [+] EMBL AK103189 [GCAACACTTGCACTGCAACCAGAAGCCAGCCACTACTCAGTAGGAGATTGGAGCTGAGAGCAGCAGCAGCAGCAGCAGCTAGGAAGATGAAGAGCCTGCAAGGTGAGGTCCACCTGAACATCCCTGCATCCAAGGCATGGGAGATGTTCACCAACAATGAGACCCTGGGCAAGATCAGCCCCGAAATGCTGTCGGGCGCCGAGTACCTTGAAGGAGATGGCAGCCCTGGCAGCCTCAGGATCTTCAAGCTAGGACCTGCACTTCATCACTTTGTCAAGGAATCTGTTCAGAAGGTTGAGAAGGTCGAGACAGGCCGGTCCTTCGGCTATGAAGTGGTCAGCGGTGAGCTGAAGGAGGTCTATGATCCCTACCATGTCACCTTCTCCTTCGCCCCCGTCCCGGGGAAGGAAGGCGAGCAGTGCGTCGCTGGGTGGAAGGCTGAGTTTGAGCCCATCACCCCCACTTCCCCGCCACCAGAGAAGGCCAAGGATGCCGCCCTCGGGTTTCTTAAATTGTTTGAGACTTGCGAAGCCACTAACTAGTAAAATGACAAAAGCTGTTGTCATCTTAATGAAGATAAGTATGAAGAAACCTATGGGTAGGACAGCGTATAGAGTACTAGGCTTGACATGTGTAATACCTGCCTAGTACCTTTCTGGAAGTGTGCTATGCCAAGTGCTATGTAATGTAATAACCCTGTACTAATTACTCTAGACCCAAAAAGGAGTCCATATAAGCTTCTTGTATATGTATGGCTGAAAATGAGATAATGTGTG ] [+] EMBL CF305512 [ GTGTAATACCTGCCTAGTACCTTTCTGGAAGTGTGCTATGCCAAGTGCTATGTAATGTAATAACCCTGTACTAATTACTCTAGACCCAAAAAGGAGTCCATATATGCTTCTTGTATATGTATGGCTGAAAATGAGATAATGTGTGTGAAGATTCTAGAAAAACAATCACAAATATCTTCATGGTATCAGAGCTTGGTCGCCAGCGACTGCGCCAAGGCTAAACCCTAGCTAGCGGTGGCTGTGGCTGGAGAAGCAGGGCGCACCGGCGGTGTATTGGCGTGTGGTGCTGGAGCTCCCGGCGAGGAAGCGAGCGTGTTGACGGTGGAGGTAGCGGTGGCTGCTGTGGTTGTGCTTGGAGGATTCCGACGTGGAGAGAAGAAGGTTTGGCTAGCAGGGAGCGCCAACGGAGACCGCGTGCACGGAGGGCAAGTTGGCGACG ] [+] EMBL AK062939 [ GTGTGAAGATTCTAGAAAAACAATCACAAATATCTTCATGGTATCAGAGCTTGGTCGCCAGCGACTGCGCCAAGGCTAAACCCTAGCTAGCGGTGGCTGTGGCTGGAGAAGCAGGGCGCACCGGCGGTGTATTGGCGTGTGGTGCTGGAGCTCCCGGCGAGGAAGCGAGCGTGTTGACGGTGGAGGTAGCGGTGGCTGCTGTGGTTGTGCTTGGAGGATTCCGACGTGGAGAGAAGAAGGTTTGGCTAGCAGGGAGCGCCAACGGAGACCGCGTGCACGGAGGGCAAGTTGGCGACGGCGTGTGGAGAGAAGAAGGTGCTGTTGCTTGCTGCCGTGTGAAGGTGCTGCTTGAGAAGGTGCAGCTGCTGCTTGCTGCTTGAGAAAGTGCTGCGGCTGCTGCTCGAGAAGGTGAGGATTTTCTGCTGCTGCTGCTGCTGAGAAGGTGAGGATTTGGTCAGATTGAGGTCTCACAGCAAGAAAAGAAGGGGAAGAGATTAACTTGTGGAGGCAAGAAGAAGGGATATAGCTGCTATTAACTTGCTGTAATAGGGAAAACCAAGGGATTGAATAGGTGATGGGTAAATTGGTAGATATGCTTGCTAAGAAATTTAGCGAGACATCTAATACCAGCCATGCGATTGTTTCTCATGTTGAATCAGTAAAACAATT] consensusID : consensus_7757#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 781 fasta sequence [AAGCCAGCCACTACTCAGTAGGAGATTGGAGCTGAGAGCAGCAGCAGCAGCAGCAGCTAGGAAGATGAAGAGCCTGCAAGGTGAGGTCCACCTGAACATCCCTGCATCCAAGGCATGGGAGATGTTCACCAACAATGAGACCCTGGGCAAGATCAGCCCCGAAATGCTGTCGGGCGCCGAGTACCTTGAAGGAGATGGCAGCCCTGGCAGCCTCAGGATCTTCAAGCTAGGACCTGCACTTCATCACTTTGTCAAGGAATCTGTTCAGAAGGTTGAGAAGGTCGAGACGGGCCGGTCCTTCGGCTATGAAGTGGTCAGTGGTGAGCTGAAAGAGGTCTACGATCCCTACCATGTCACCTTCTCCTTCGCCCCTGTCCCGGAGAAGGAAGGCGAGCAGTGCGTCGCTGGGTGGAAGGCTGAGTTTGAGCCCATCACCCCCACCTTCCCGTCACCGGAGAAGGCCAAGGATGCCGCCCTCGGGTTTCTCAAATTGTTTGAGACTTGCGAGGCCGCTAACTAGTAAAATGACAAAAACTGTTGTCATCATAATGAAGATAAGTATGAAGAAACCTATGGGTAGGACAGTGTATAGAGTACTAGGGCTTGAC-TGTGTAATATCTG-CTAGTACCTATCTGGAAAGTGT-TGTGTACGCCAAGTGCTATGAAATGTAATAAGCCCGTACTATCTGAATACATATAAAAATTCTGCTTAAAAAAAAGGTTCAGTGGTATGTTAATGAATTGGTTGATTTGTAAAGCTAGACTTTCTCAATATAGAGACT] [+] EMBL BE040547 [AAGCCAGCCACTACTCAGTAGGAGATTGGAGCTGAGAGCAGCAGCAGCAGCAGCAGCTAGGAAGATGAAGAGCCTGCAAGGTGAGGTCCACCTGAACATCCCTGCATCCAAGGCATGGGAGATGTTCACCAACAATGAGACCCTGGGCAAGATCAGCCCCGAAATGCTGTCGGGCGCCGAGTACCTTGAAGGAGATGGCAGCCCTGGCAGCCTCAGGATCTTCAAGCTAGGACCTGCACTTCATCACTTTGTCAAGGAATCTGTTCAGAAGGTTGAGAAGGTCGAGACGGGCCGGTCCTTCGGCTATGAAGTGGTCAGTGGTGAGCTGAAAGAGGTCTACGATCCCTACCATGTCACCTTCTCCTTCGCCCCTGTCCCGGAGAAGGAAGGCGAGCAGTGCGTCGCTGGGTGGAAGGCTGAGTTTGAGCCCATCACCCCCACCTTCCCGTCACCGGAGAAGGCCAAGGATGCCGCCCTCGGGTTTCTCAAATTGTTTGAGACTTGCGAGGCCGCTAACTAGTAAAATGACAAAAACTGTTGTCATCATAATGAAGATAAGTATGAAGAAACCTATGGGTAGGACAGTGTATAGAGTACTAGGGCTTGAC TGTGTAATATCTG CTAGTACCTATCTGGAAAGTGT TGTGTACGCCAAGTGCTATGAAATGTAATAAGCCCGTACTATCTGAATACATATAAAAATTCTGCTTAAAAAAAA ] [+] EMBL BE040440 [ CATCACCGCCACCTGCCCGCCACCGGAGAAGGCCAAGGATGCCGCCCTCGGGTTTCTCAAATTGTTTGAGACTTGCGAGGCCGCTAACTAGTAAAATGACAAAAACTGTGGTCATCATAATGAAGATAAGTATGAAGAAACCTATGGGTAGGACAGTGTATAGAGTGCTA GGCTTGACTTGTGCAATATCTGCCTAGTACCTTTCTGG AAGTGTGTGT TACGCCAAGTGCTATGAAATGTAATAAGCCCGTACTATCTGAATACATATAAAATTCCTGCTTAGTCATGTGGTTCAGTGGTATGTTAATGAATTGGTTGATTTGTAAAGCTAGACTTTCTCAATATAGAGACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7757#0 GCAACACTTGCACTGCAACCAGAAGCCAGCCACTACTCAGTAGGAGATTGGAGCTGAGAG 60 consensus_7757#1 ----------------------AAGCCAGCCACTACTCAGTAGGAGATTGGAGCTGAGAG 38 ************************************** consensus_7757#0 CAGCAGCAGCAGCAGCAGCTAGGAAGATGAAGAGCCTGCAAGGTGAGGTCCACCTGAACA 120 consensus_7757#1 CAGCAGCAGCAGCAGCAGCTAGGAAGATGAAGAGCCTGCAAGGTGAGGTCCACCTGAACA 98 ************************************************************ consensus_7757#0 TCCCTGCATCCAAGGCATGGGAGATGTTCACCAACAATGAGACCCTGGGCAAGATCAGCC 180 consensus_7757#1 TCCCTGCATCCAAGGCATGGGAGATGTTCACCAACAATGAGACCCTGGGCAAGATCAGCC 158 ************************************************************ consensus_7757#0 CCGAAATGCTGTCGGGCGCCGAGTACCTTGAAGGAGATGGCAGCCCTGGCAGCCTCAGGA 240 consensus_7757#1 CCGAAATGCTGTCGGGCGCCGAGTACCTTGAAGGAGATGGCAGCCCTGGCAGCCTCAGGA 218 ************************************************************ consensus_7757#0 TCTTCAAGCTAGGACCTGCACTTCATCACTTTGTCAAGGAATCTGTTCAGAAGGTTGAGA 300 consensus_7757#1 TCTTCAAGCTAGGACCTGCACTTCATCACTTTGTCAAGGAATCTGTTCAGAAGGTTGAGA 278 ************************************************************ consensus_7757#0 AGGTCGAGACAGGCCGGTCCTTCGGCTATGAAGTGGTCAGCGGTGAGCTGAAGGAGGTCT 360 consensus_7757#1 AGGTCGAGACGGGCCGGTCCTTCGGCTATGAAGTGGTCAGTGGTGAGCTGAAAGAGGTCT 338 ********** ***************************** *********** ******* consensus_7757#0 ATGATCCCTACCATGTCACCTTCTCCTTCGCCCCCGTCCCGGGGAAGGAAGGCGAGCAGT 420 consensus_7757#1 ACGATCCCTACCATGTCACCTTCTCCTTCGCCCCTGTCCCGGAGAAGGAAGGCGAGCAGT 398 * ******************************** ******* ***************** consensus_7757#0 GCGTCGCTGGGTGGAAGGCTGAGTTTGAGCCCATCACCCCCACTTCCCCGCCACCAGAGA 480 consensus_7757#1 GCGTCGCTGGGTGGAAGGCTGAGTTTGAGCCCATCACCCCCACCTTCCCGTCACCGGAGA 458 ******************************************* * **** **** **** consensus_7757#0 AGGCCAAGGATGCCGCCCTCGGGTTTCTTAAATTGTTTGAGACTTGCGAAGCCACTAACT 540 consensus_7757#1 AGGCCAAGGATGCCGCCCTCGGGTTTCTCAAATTGTTTGAGACTTGCGAGGCCGCTAACT 518 **************************** ******************** *** ****** consensus_7757#0 AGTAAAATGACAAAAGCTGTTGTCATCTTAATGAAGATAAGTATGAAGAAACCTATGGGT 600 consensus_7757#1 AGTAAAATGACAAAAACTGTTGTCATCATAATGAAGATAAGTATGAAGAAACCTATGGGT 578 *************** *********** ******************************** consensus_7757#0 AGGACAGCGTATAGAGTACTAGG-CTTGACATGTGTAATACCTGCCTAGTACCTTTCTGG 659 consensus_7757#1 AGGACAGTGTATAGAGTACTAGGGCTTGAC-TGTGTAATATCTGC-TAGTACCTATCTGG 636 ******* *************** ****** ********* **** ******** ***** consensus_7757#0 AA-GTGTGCTAT--GCCAAGTGCTATGTAATGTAATAACCCTGTACTAATTACTCTAGAC 716 consensus_7757#1 AAAGTGTTGTGTACGCCAAGTGCTATGAAATGTAATAAGCCCGTACTATCTGAA-TACAT 695 ** **** * * ************* ********** ** ****** * ** * consensus_7757#0 CCAAAAAGGAGTCCATATAAGCTTCTTGTATATGTATGGCTGAAAATGAGATAATGTGTG 776 consensus_7757#1 ATAAAAATTC-TGCTTAAAAAAAAGGTTCAGTGGTATGTTAATGAATTGGTTGATTTGTA 754 ***** * * ** ** * * ***** *** * * ** *** consensus_7757#0 TGA--AGATTCTAGAAAAACAATCACAAATATCTTCATGGTATCAGAGCTTGGTCGCCAG 834 consensus_7757#1 AAGCTAGACTTTCTCAATATAGAGACT--------------------------------- 781 *** * * ** * * ** consensus_7757#0 CGACTGCGCCAAGGCTAAACCCTAGCTAGCGGTGGCTGTGGCTGGAGAAGCAGGGCGCAC 894 consensus_7757#1 ------------------------------------------------------------ consensus_7757#0 CGGCGGTGTATTGGCGTGTGGTGCTGGAGCTCCCGGCGAGGAAGCGAGCGTGTTGACGGT 954 consensus_7757#1 ------------------------------------------------------------ consensus_7757#0 GGAGGTAGCGGTGGCTGCTGTGGTTGTGCTTGGAGGATTCCGACGTGGAGAGAAGAAGGT 1014 consensus_7757#1 ------------------------------------------------------------ consensus_7757#0 TTGGCTAGCAGGGAGCGCCAACGGAGACCGCGTGCACGGAGGGCAAGTTGGCGACGGCGT 1074 consensus_7757#1 ------------------------------------------------------------ consensus_7757#0 GTGGAGAGAAGAAGGTGCTGTTGCTTGCTGCCGTGTGAAGGTGCTGCTTGAGAAGGTGCA 1134 consensus_7757#1 ------------------------------------------------------------ consensus_7757#0 GCTGCTGCTTGCTGCTTGAGAAAGTGCTGCGGCTGCTGCTCGAGAAGGTGAGGATTTTCT 1194 consensus_7757#1 ------------------------------------------------------------ consensus_7757#0 GCTGCTGCTGCTGCTGAGAAGGTGAGGATTTGGTCAGATTGAGGTCTCACAGCAAGAAAA 1254 consensus_7757#1 ------------------------------------------------------------ consensus_7757#0 GAAGGGGAAGAGATTAACTTGTGGAGGCAAGAAGAAGGGATATAGCTGCTATTAACTTGC 1314 consensus_7757#1 ------------------------------------------------------------ consensus_7757#0 TGTAATAGGGAAAACCAAGGGATTGAATAGGTGATGGGTAAATTGGTAGATATGCTTGCT 1374 consensus_7757#1 ------------------------------------------------------------ consensus_7757#0 AAGAAATTTAGCGAGACATCTAATACCAGCCATGCGATTGTTTCTCATGTTGAATCAGTA 1434 consensus_7757#1 ------------------------------------------------------------ consensus_7757#0 AAACAATT 1442 consensus_7757#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||