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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7760#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1268 fasta sequence
[GCATCACAACCATCTAAAGCAAACTTGTTTCATTATCATTTTTTTCAGTCACTTTCTACTGACTGCTATTGTACACATGTCCCAGAAAAACTAGGGAAATTTTAAACAAATGGTTCATAACATATGTATATAAAGCAACAGGAAAACCACTACCACATATCCCAGAAGAACAAGCTAATGGTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGAAGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACATCCACATTTCAAATTT--GCCAGTTCTGGCATAATATAACCAATTTACTGGAGTTATTATGTTGAGCTAAACATTCACGCCTTCAGATTGTGCTGGACTATCTGACTTGTTTTTTGCACTTTGTGTTGCTACATCACCCTCACTGTCAGGAAAAACTTCTGGCTGCAGTGAAGGTGCAATCTTGTTAACTTGAAGCCATGTTGCTTCCCACAAACTGTTCTCTTCACTGGTGCTTGTCTTTGATAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGCTCT-GGGATAACCTCTTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGCTTCTCTATCATGTCAAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATGTCATTAAGTGACTGCAAGAACACTTTGCATAGAAGTTTTACAGCATGCAAGAGGGACACCTCCATGTTTCTGAAATCCTTCGGTGAGTAATTTTGTGCAATCTCCAGTAATTCATCAAGCAACTGGAAAATAATATCAAATGACATCAACCATGCTGAAGATGGCACTGATATCCCATCAACTACTAAGCATCTGTGCAATGATAATAGCGCATGATTCCTTACTTCCTCCCTCTGGTCTGTGCACACCTTCCGTAGTGCCTGCACTAGTCGCAGCCACATCTCAGCAATTCCTTCCAATATCCTGTCAGCCTCCCCACCAGCTTCCTTAACCTCACGTGACCAGCGTGTAAGACAATTCACTGATTCTGCCATAAGGTTCAAAGCATGGATAGATCTTTCTGCAGAGCCAAGCCGAGACTCTGCAAACTGCCTTGAGGCCTCCACAGAAAGGACAAAGTTAGCAGGGGAGAGGTGTGCTCCCTCAGACAGATAAAAACTAGGGCTTCAAAACCAACGTCAGAAGCATCTGGATGACGAGCAGTGATGCAGAGTAATGAAAG]
[+] EMBL CB684235 [GCATCACAACCATCTAAAGCAAACTTGTTTCATTATCATTTTTTTCAGTCACTTTCTACTGACTGCTATTGTACACATGTCCCAGAAAAACTAGGGAAATTTTAAACAAATGGTTCATAACATATGTATATAAAGCAACAGGAAAACCACTACCACATATCCCAGAAGAACAAGCTAATGGTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGAAGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACATCCACATTTCAAATTTTAGGAAGTTCTGGCATAATATAACCAATTTACTGGAGTTATTATGTTGAGCTAAACATTCACGCCTTCAGATTGTGCTGGACTATCTGACTTGTTTTTTGCACTTTGTGTTGCTACATCACCCTCACTGTCAGGAAAAACTTCTGGCTGCAGTGAAGGTGCAATCTTGTTAACTTGAAGCCATGTTGCTTCCCACAAACTGTTCTCTTCACTGGTGCTTGTCTTTGATAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGCTCT GGGATAACCTCTTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGCTTCTCTATCATGTCAAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATGTCATTAAGTGACTGCAAGAACACTTTGCATAGAAGTTTTACAGCATGCAAGAGGGACACCTCCATGTTTCTGAAATCCTTCGGTGAGTAATTTTGTGCAATCTCCAGTAATTCATCA ]
[-] EMBL CA752726 [ TAAAGCAAACTTGTTTCATTATCATTTTTTTCAGTCACTTTCTACTGACTGCTATTGTACACATGTCCCAGAAAAACTAGGGAAATTTTAAACAAATGGTTCATAACATATGTATATAAAGCAACAGGAAAACCACTACCACATATCCCAGAAGAACAAGCTAATGGTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGAAGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACATCCACATTTCAAATTT CCAGTTCTGGCATAATATAACCAATTTACT ]
[-] EMBL CA752722 [ TAAAGCAAACTTGTTTCATTATCATTTTTTTCAGTCACTTTCTACTGACTGCTATTGTACACATGTCCCAGAAAAACTAGGGAAATTTTAAACAAATGGTTCATAACATATGTATATAAAGCAACAGGAAAACCACTACCACATATCCCAGAAGAACAAGCTAATGGTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGAAGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACATCCACATTTCAAA TT CCCAGTTCTGGCATAATAT ]
[-] EMBL CA765057 [ CTTGTTANC TGAAGCCATG TGCTTCCCACAANCTGTTCTCTTCACTGGTGCTTGTCTTTGATAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGCTCTGGGGATANCCTCTTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGCTTCTCTATCATGTCAAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATGTCATTAAGTGNCTGCATGAACACTTTGCATAGAAGTTTTACAGCATGCAAGAGGGACACCTCCATGTTTCTGAAATCCTTCGGTGAGTAATTTTGTGCAATCTCCAGTAATTCATCAAGCAACTGGAAAATAATATCAAATGACATCAACCATGCTGAAGATGGCACTGATATCCCATCAACTACTAAGCATCTGTGCAATGATAATAGCGCATGATTCCTTACTTCCTCCCTCTGGTCTGTGCACACCTTCCGTAGTGCCTGCACTAGTCGCAGCCACATCTCAGCAATTCCTTCCAATATCCTGTCAGCCTCCCCACCAGCTTCCTTAACCTCACGTGACCAGCGTGTAAGACAATTCACTGATTCTGCCATAAGGTTCAAAGCATGGATAGATCTTTCTGCAGAGCCAAGCCGAGACTCTGCAAACTGCCTTGAGGCCTCCACAGAAAGGACAAAGTTAGCAGGGGAGAGGTGTGCTCCCTCAGACAGATAAAAACTAGGGCTTCAAAACCAACGTCAGAAGCATCTGGATGACGAGCAGTGATGCAGAGTAATGAAAG]
consensusID : consensus_7760#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence
[TCTTTTTTTTTGGTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGAAGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACATCCACATTTCAAATTTTAGGAAGTTCTGGCATAATATAACCAATTTACTGGAGTTATTATGTTGAGCTAAACATTCACGCCTTCAGATTGTGCTGGACTATCTGACTTGTTTTTTGCACTTTGTGTTGCTACATCACCCTCACTGTCAGGAAAAACTTCTGGCTGCAGTGAAGGTGCAATCTTGTTAACTTGAAGCCATGTTGCTTCCCACAAACTGTTCTCTTCACTGGTGCTTGTCTTTGATAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGCTCTGGGATAACCTCTTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGCTTCTCTATCATGTCAAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATGTCATTAAGTGACTGCAAGAACACT]
[+] EMBL CB674602 [TCTTTTTTTTTGGTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGAAGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACATCCACATTTCAAATTTTAGGAAGTTCTGGCATAATATAACCAATTTACTGGAGTTATTATGTTGAGCTAAACATTCACGCCTTCAGATTGTGCTGGACTATCTGACTTGTTTTTTGCACTTTGTGTTGCTACATCACCCTCACTGTCAGGAAAAACTTCTGGCTGCAGTGAAGGTGCAATCTTGTTAACTTGAAGCCATGTTGCTTCCCACAAACTGTTCTCTTCACTGGTGCTTGTCTTTGATAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGCTCTGGGATAACCTCTTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGCTTCTCTATCATGTCAAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATGTCATTAAGTGACTGCAAGAACACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7760#0 GCATCACAACCATCTAAAGCAAACTTGTTTCATTATCATTTTTTTCAGTCACTTTCTACT 60
consensus_7760#1 ------------------------------------------------------------
consensus_7760#0 GACTGCTATTGTACACATGTCCCAGAAAAACTAGGGAAATTTTAAACAAATGGTTCATAA 120
consensus_7760#1 ------------------------------------------------------------
consensus_7760#0 CATATGTATATAAAGCAACAGGAAAACCACTACCACATATCCCAGAAGAACAAGCTAATG 180
consensus_7760#1 ------------------------------------------------TCTTTTTTTTTG 12
* **
consensus_7760#0 GTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGA 240
consensus_7760#1 GTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGA 72
************************************************************
consensus_7760#0 AGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACAT 300
consensus_7760#1 AGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACAT 132
************************************************************
consensus_7760#0 CCACATTTCAAATTT--GCCAGTTCTGGCATAATATAACCAATTTACTGGAGTTATTATG 358
consensus_7760#1 CCACATTTCAAATTTTAGGAAGTTCTGGCATAATATAACCAATTTACTGGAGTTATTATG 192
*************** * ****************************************
consensus_7760#0 TTGAGCTAAACATTCACGCCTTCAGATTGTGCTGGACTATCTGACTTGTTTTTTGCACTT 418
consensus_7760#1 TTGAGCTAAACATTCACGCCTTCAGATTGTGCTGGACTATCTGACTTGTTTTTTGCACTT 252
************************************************************
consensus_7760#0 TGTGTTGCTACATCACCCTCACTGTCAGGAAAAACTTCTGGCTGCAGTGAAGGTGCAATC 478
consensus_7760#1 TGTGTTGCTACATCACCCTCACTGTCAGGAAAAACTTCTGGCTGCAGTGAAGGTGCAATC 312
************************************************************
consensus_7760#0 TTGTTAACTTGAAGCCATGTTGCTTCCCACAAACTGTTCTCTTCACTGGTGCTTGTCTTT 538
consensus_7760#1 TTGTTAACTTGAAGCCATGTTGCTTCCCACAAACTGTTCTCTTCACTGGTGCTTGTCTTT 372
************************************************************
consensus_7760#0 GATAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGCTCTGGGATAACC 598
consensus_7760#1 GATAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGCTCTGGGATAACC 432
************************************************************
consensus_7760#0 TCTTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGCTTCTCTATCATG 658
consensus_7760#1 TCTTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGCTTCTCTATCATG 492
************************************************************
consensus_7760#0 TCAAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATGTCATTAAGTGAC 718
consensus_7760#1 TCAAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATGTCATTAAGTGAC 552
************************************************************
consensus_7760#0 TGCAAGAACACTTTGCATAGAAGTTTTACAGCATGCAAGAGGGACACCTCCATGTTTCTG 778
consensus_7760#1 TGCAAGAACACT------------------------------------------------ 564
************
consensus_7760#0 AAATCCTTCGGTGAGTAATTTTGTGCAATCTCCAGTAATTCATCAAGCAACTGGAAAATA 838
consensus_7760#1 ------------------------------------------------------------
consensus_7760#0 ATATCAAATGACATCAACCATGCTGAAGATGGCACTGATATCCCATCAACTACTAAGCAT 898
consensus_7760#1 ------------------------------------------------------------
consensus_7760#0 CTGTGCAATGATAATAGCGCATGATTCCTTACTTCCTCCCTCTGGTCTGTGCACACCTTC 958
consensus_7760#1 ------------------------------------------------------------
consensus_7760#0 CGTAGTGCCTGCACTAGTCGCAGCCACATCTCAGCAATTCCTTCCAATATCCTGTCAGCC 1018
consensus_7760#1 ------------------------------------------------------------
consensus_7760#0 TCCCCACCAGCTTCCTTAACCTCACGTGACCAGCGTGTAAGACAATTCACTGATTCTGCC 1078
consensus_7760#1 ------------------------------------------------------------
consensus_7760#0 ATAAGGTTCAAAGCATGGATAGATCTTTCTGCAGAGCCAAGCCGAGACTCTGCAAACTGC 1138
consensus_7760#1 ------------------------------------------------------------
consensus_7760#0 CTTGAGGCCTCCACAGAAAGGACAAAGTTAGCAGGGGAGAGGTGTGCTCCCTCAGACAGA 1198
consensus_7760#1 ------------------------------------------------------------
consensus_7760#0 TAAAAACTAGGGCTTCAAAACCAACGTCAGAAGCATCTGGATGACGAGCAGTGATGCAGA 1258
consensus_7760#1 ------------------------------------------------------------
consensus_7760#0 GTAATGAAAG 1268
consensus_7760#1 ----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||