cluster # 7763

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Oryza sativa
cluster # 7763 cluster # 7763 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7763#0 length = 908 sequences # 4

consensus_7763#1 length = 294 sequences # 1

consensusID : consensus_7763#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 908
fasta sequence

                              [CTCACCACCAATCTCTCCTCGCCCACCTCTCCCATCTCGGCCACCACCACCGATCGCCCCTCGCGTGCATGTCGCAGCCGGAGTAGCATCGCATGCGTGCAATGCCGTCTCCTCCTCCTCATGGCCCCATGTCGCTGATGGCCAGCCGGTGCTACTGCTGTTCGTCGCCGCCTTCGCCGTCGCCGAAGCAGCGGAGAGACGCCGAGAGCAAGCAGCAGCAGCAGCAGCACATCCGCGGAGCGCGGCTGGCGGTGACGACGAGGAGGGCGCTGCTGGCCGCCGCCATCGTCGTCGTGGGCTCCGGCACGGCGGGGCGCGCCAGGGCGACGGAGGAAGGCGGCGGCGGCGAGGGGGAGGGGGTGGTCGGGGCGATCAAATCGATATTTGACCCGAACGAGAGGACCAAGTCGGGGAAGGTGTTGCCCAAGGCGTACCTGAAGGCGGCGAGGGAGGTGGTGCGGACGCTCCGGGAGTCGCTGGGGGAGGACGACGGCGGCGACGTGGCCAAGTTCCGGCGAGGCGCCGACGCCGCCAAGGAGTCCATCCGGGAGTTCCTCGGCGGCTGGCGAGGCCAGCAAGCCGTCGCTGCTGAGGAGTCATACGTTGCGCTGGAGAAGGCCATCAGATCACTGGCGGAGTTCTACTCCAAGGCAGGGCCATTCGCCTCGCTGCCCAAAGATGTCAAGGACAAGATCCTCGCCAACCTCAACACTGCAGACGCCTTTCTGTAGAGATTTATTTTCTTCTGTCAG-AAAAAAAAAGTACTATCTGCCAACAATCAACGAGTGATAATTGCATTGTAGCCAGCCTTCACTTTGCCTGCGAAAAGATCATTGGCAAAGACAGAAAAGAGCAGATAGAACATATGATTACAAGTAAATGCTTTCCAGAGTGATTAAAAAAAAAAG]

[+] EMBL AK058795             [CTCACCACCAATCTCTCCTCGCCCACCTCTCCCATCTCGGCCACCACCACCGATCGCCCCTCGCGTGCATGTCGCAGCCGGAGTAGCATCGCATGCGTGCAATGCCGTCTCCTCCTCCTCATGGCCCCATGTCGCTGATGGCCAGCCGGTGCTACTGCTGTTCGTCGCCGCCTTCGCCGTCGCCGAAGCAGCGGAGAGACGCCGAGAGCAAGCAGCAGCAGCAGCAGCACATCCGCGGAGCGCGGCTGGCGGTGACGACGAGGAGGGCGCTGCTGGCCGCCGCCATCGTCGTCGTGGGCTCCGGCACGGCGGGGCGCGCCAGGGCGACGGAGGAAGGCGGCGGCGGCGAGGGGGAGGGGGTGGTCGGGGCGATCAAATCGATATTTGACCCGAACGAGAGGACCAAGTCGGGGAAGGTGTTGCCCAAGGCGTACCTGAAGGCGGCGAGGGAGGTGGTGCGGACGCTCCGGGAGTCGCTGGGGGAGGACGACGGCGGCGACGTGGCCAAGTTCCGGCGAGGCGCCGACGCCGCCAAGGAGTCCATCCGGGAGTTCCTCGGCGGCTGGCGAGGCCAGCAAGCCGTCGCTGCTGAGGAGTCATACGTTGCGCTGGAGAAGGCCATCAGATCACTGGCGGAGTTCTACTCCAAGGCAGGGCCATTCGCCTCGCTGCCCAAAGATGTCAAGGACAAGATCCTCGCCAACCTCAACACTGCAGACGCCTTTCTGTAGAGATTTATTTTCTTCTGTCAG AAAAAAAAAGTACTAACTGCCAACAATCAACGAGTGATAATTGCATTGTAGCCAGCCTTCACTTTGCCTGCGAAAAGATCATTGGCAAAGACAGAAAAGAGCAGATAGAACATAT                                         ]
[+] EMBL AU174596             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGTGGTGCGGACGCTCCGGGAGTCGCTGGGGGAGGACGACGGCGGCGACGTGGCCAAGTTCCGGCGAGGCGCCGACGCCGCCAAGGAGTCCATCCGGGAGTTCCTCGGCGGCTGGCGAGGCCAGCAAGCCGTCGCTGCTGAGGAGTCATACGTTGCGCTGGAGAAGGCCATCAGATCACTGGCGGAGTTNTACTCCAAGGCAGGGCCATTCGCCTCGCTGCCCAAAGATGTCAAGGACAAGATCCTCGCCAACCTCAACACTGCAGACGCCTTTCTGTAGAGATTTATTTTCTTCTGTCAG AAAAAAAAAGTACTATCTGCCAACAATCAACGAGTGATAATTGCATTGTAGCCAGCCTTCACTTTGCCTGCGAAAAGATCATTGGCAAAGACAGAAAAGAGCAGATAGAACATATGATTACAAGTAAATGCTTTCCAGAGTGATTAAAAAAAAAA ]
[-] EMBL CF324787             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CAGATCACTGGCGGAGTTCTACTCCAAGGCAGGGCCATTCGCCTCGCTGCCCAAAGATGTCAAGGACAAGATCCTCGCCAACCTCAACACTGCAGACGCCTTTCTGTAGAGATTTATTTTCTTCTGTCAG AAAAAAAAAGTACTATCTGCCAACAATCAACGAGTGATAATTGCATTGTAGCCAGCCTTCACTTTGCCTGCGAAAAGATCATTGGCAAAGACAGAAAAGAGCAGATA                                                 ]
[+] EMBL CB684977             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    taaAAGGCAGGGCCATTCGCCTCGCTGCCCAAAGATGTCAAGGACAAGATCCTCGCCAACCTCAACACTGCAGACGCCTTTCTGTAGAGATTTATTTTCTTCTGTCAGAAAAAAAAAAGTACTATCTGCCAACAATCAACGAGTGATAATTGCATTGTAGCCAGCCTTCACTTTGCCTGCGAAAAGATCATTGGCAAAGACAGAAAAGAGCAGATAGAACATATGATTACAAGTAAATGCTTTCCAGAGTGATTATAAccttgcg]




>consensus_7763#0
CTCACCACCAATCTCTCCTCGCCCACCTCTCCCATCTCGGCCACCACCACCGATCGCCCC
TCGCGTGCATGTCGCAGCCGGAGTAGCATCGCATGCGTGCAATGCCGTCTCCTCCTCCTC
ATGGCCCCATGTCGCTGATGGCCAGCCGGTGCTACTGCTGTTCGTCGCCGCCTTCGCCGT
CGCCGAAGCAGCGGAGAGACGCCGAGAGCAAGCAGCAGCAGCAGCAGCACATCCGCGGAG
CGCGGCTGGCGGTGACGACGAGGAGGGCGCTGCTGGCCGCCGCCATCGTCGTCGTGGGCT
CCGGCACGGCGGGGCGCGCCAGGGCGACGGAGGAAGGCGGCGGCGGCGAGGGGGAGGGGG
TGGTCGGGGCGATCAAATCGATATTTGACCCGAACGAGAGGACCAAGTCGGGGAAGGTGT
TGCCCAAGGCGTACCTGAAGGCGGCGAGGGAGGTGGTGCGGACGCTCCGGGAGTCGCTGG
GGGAGGACGACGGCGGCGACGTGGCCAAGTTCCGGCGAGGCGCCGACGCCGCCAAGGAGT
CCATCCGGGAGTTCCTCGGCGGCTGGCGAGGCCAGCAAGCCGTCGCTGCTGAGGAGTCAT
ACGTTGCGCTGGAGAAGGCCATCAGATCACTGGCGGAGTTCTACTCCAAGGCAGGGCCAT
TCGCCTCGCTGCCCAAAGATGTCAAGGACAAGATCCTCGCCAACCTCAACACTGCAGACG
CCTTTCTGTAGAGATTTATTTTCTTCTGTCAGAAAAAAAAAGTACTATCTGCCAACAATC
AACGAGTGATAATTGCATTGTAGCCAGCCTTCACTTTGCCTGCGAAAAGATCATTGGCAA
AGACAGAAAAGAGCAGATAGAACATATGATTACAAGTAAATGCTTTCCAGAGTGATTAAA
AAAAAAAG

consensusID : consensus_7763#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 294
fasta sequence

                              [GAGTTACCTTTTGCGCTGGAGAAGGCCATCATATCACTGGCGGAGTTCTACTCCAAGGCAGGGGCATTCTCCTCGCTGCCCAAAGATGTCAAGGACAAGATCCTCGCCAACCTCAACACTGCAGACGCCTTTCTGTAGAGATTTATTTTCTTCTGTCAGAAAAAAAAAGTACTATCTGCCAACAATCAACGAGTGATAATTGCATTGTAGCCAGCCTTCACTTTGCCTGCGAAAAGATCATTGGCAAAGACAGAAAAGAGCAGATAGAACATATGATTACAAGTAAATGCTTTC]

[+] EMBL CB679941             [GAGTTACCTTTTGCGCTGGAGAAGGCCATCATATCACTGGCGGAGTTCTACTCCAAGGCAGGGGCATTCTCCTCGCTGCCCAAAGATGTCAAGGACAAGATCCTCGCCAACCTCAACACTGCAGACGCCTTTCTGTAGAGATTTATTTTCTTCTGTCAGAAAAAAAAAGTACTATCTGCCAACAATCAACGAGTGATAATTGCATTGTAGCCAGCCTTCACTTTGCCTGCGAAAAGATCATTGGCAAAGACAGAAAAGAGCAGATAGAACATATGATTACAAGTAAATGCTTTC]




>consensus_7763#1
GAGTTACCTTTTGCGCTGGAGAAGGCCATCATATCACTGGCGGAGTTCTACTCCAAGGCA
GGGGCATTCTCCTCGCTGCCCAAAGATGTCAAGGACAAGATCCTCGCCAACCTCAACACT
GCAGACGCCTTTCTGTAGAGATTTATTTTCTTCTGTCAGAAAAAAAAAGTACTATCTGCC
AACAATCAACGAGTGATAATTGCATTGTAGCCAGCCTTCACTTTGCCTGCGAAAAGATCA
TTGGCAAAGACAGAAAAGAGCAGATAGAACATATGATTACAAGTAAATGCTTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7763#0      CTCACCACCAATCTCTCCTCGCCCACCTCTCCCATCTCGGCCACCACCACCGATCGCCCC 60
consensus_7763#1      ------------------------------------------------------------
                                                                                  

consensus_7763#0      TCGCGTGCATGTCGCAGCCGGAGTAGCATCGCATGCGTGCAATGCCGTCTCCTCCTCCTC 120
consensus_7763#1      ------------------------------------------------------------
                                                                                  

consensus_7763#0      ATGGCCCCATGTCGCTGATGGCCAGCCGGTGCTACTGCTGTTCGTCGCCGCCTTCGCCGT 180
consensus_7763#1      ------------------------------------------------------------
                                                                                  

consensus_7763#0      CGCCGAAGCAGCGGAGAGACGCCGAGAGCAAGCAGCAGCAGCAGCAGCACATCCGCGGAG 240
consensus_7763#1      ------------------------------------------------------------
                                                                                  

consensus_7763#0      CGCGGCTGGCGGTGACGACGAGGAGGGCGCTGCTGGCCGCCGCCATCGTCGTCGTGGGCT 300
consensus_7763#1      ------------------------------------------------------------
                                                                                  

consensus_7763#0      CCGGCACGGCGGGGCGCGCCAGGGCGACGGAGGAAGGCGGCGGCGGCGAGGGGGAGGGGG 360
consensus_7763#1      ------------------------------------------------------------
                                                                                  

consensus_7763#0      TGGTCGGGGCGATCAAATCGATATTTGACCCGAACGAGAGGACCAAGTCGGGGAAGGTGT 420
consensus_7763#1      ------------------------------------------------------------
                                                                                  

consensus_7763#0      TGCCCAAGGCGTACCTGAAGGCGGCGAGGGAGGTGGTGCGGACGCTCCGGGAGTCGCTGG 480
consensus_7763#1      ------------------------------------------------------------
                                                                                  

consensus_7763#0      GGGAGGACGACGGCGGCGACGTGGCCAAGTTCCGGCGAGGCGCCGACGCCGCCAAGGAGT 540
consensus_7763#1      ------------------------------------------------------------
                                                                                  

consensus_7763#0      CCATCCGGGAGTTCCTCGGCGGCTGGCGAGGCCAGCAAGCCGTCGCTGCTGAGGAGTCAT 600
consensus_7763#1      -----------------------------------------------------GAGTTAC 7
                                                                           **** * 

consensus_7763#0      ACGTTGCGCTGGAGAAGGCCATCAGATCACTGGCGGAGTTCTACTCCAAGGCAGGGCCAT 660
consensus_7763#1      CTTTTGCGCTGGAGAAGGCCATCATATCACTGGCGGAGTTCTACTCCAAGGCAGGGGCAT 67
                         ********************* ******************************* ***

consensus_7763#0      TCGCCTCGCTGCCCAAAGATGTCAAGGACAAGATCCTCGCCAACCTCAACACTGCAGACG 720
consensus_7763#1      TCTCCTCGCTGCCCAAAGATGTCAAGGACAAGATCCTCGCCAACCTCAACACTGCAGACG 127
                      ** *********************************************************

consensus_7763#0      CCTTTCTGTAGAGATTTATTTTCTTCTGTCAGAAAAAAAAAGTACTATCTGCCAACAATC 780
consensus_7763#1      CCTTTCTGTAGAGATTTATTTTCTTCTGTCAGAAAAAAAAAGTACTATCTGCCAACAATC 187
                      ************************************************************

consensus_7763#0      AACGAGTGATAATTGCATTGTAGCCAGCCTTCACTTTGCCTGCGAAAAGATCATTGGCAA 840
consensus_7763#1      AACGAGTGATAATTGCATTGTAGCCAGCCTTCACTTTGCCTGCGAAAAGATCATTGGCAA 247
                      ************************************************************

consensus_7763#0      AGACAGAAAAGAGCAGATAGAACATATGATTACAAGTAAATGCTTTCCAGAGTGATTAAA 900
consensus_7763#1      AGACAGAAAAGAGCAGATAGAACATATGATTACAAGTAAATGCTTTC------------- 294
                      ***********************************************             

consensus_7763#0      AAAAAAAG 908
consensus_7763#1      --------