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Oryza sativa
cluster # 7764 cluster # 7764       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7764#0 length = 897 sequences # 2  
consensus_7764#1 length = 778 sequences # 2  
consensus_7764#2 length = 403 sequences # 1  

consensusID : consensus_7764#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 897
fasta sequence
                              [ATTTTCAACGCTGTTGCTGCTACAGTAATCCCATCTCGACGAGTGTGTGCACACGCGTTGGGAGAGTAGGCCTCCGAAACCACGCGTTGGGAGAGTAGGCCTCCAAAACTACGCGTTGCTGCGACGTTTGCACGGACGGGCGTGCGATCAGGTTTTTGGGTAGCGCAAGGCGCGACTACTCACTGTTCGTCAACATCTACTTCACCTTCACCAATATGTCAAACACTGGAGACAACGGCAACACTGGATACAAGGAGAAGGAGGCTCCCGTCAATACCAACGGAGGCAATACTGCCTCAAACTCCAGCGGATGACCATTCTTGGGGTGGAGTTCTACTTCAGCGACAGCAACCTCCCGCGCGATAAGTTCCTGAGGGAGACGGTCGAGCAGCGCGAAGATGGATGTAAATGATCTCTCGCGCAGTACATTTTCCACGCGGATTGCTTTTCTCCGGCGCGATGATTGAGTGCTGAACTTAGCGTCTTTTTTTCTTCTTCTCATTTTGTTGGAAATGTGCAGTGGTAAGCTTGGCTTTGATATGCTCTTTCGCGCGGATGAAGTCGCACCTCGGGCTGGACGCCGCCGTGAAGCCCGAAACTGTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTACGTCGTTCCCAGATGCTTCGTATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAGCTGTTGAAGGCAGATGAAATCATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCATTGCCTTACAATGTAGAGCTGGAAGATGTCCAATCTTTCTTTGCGCAATATGCAAAGGTAAATAGTGTCAGGCTACCACGCCATATCGCAAACAAAAAACACTTCTGTGGCACTGCCTTAGTTGAATTTTCAGAAGAC]

[+] EMBL CB632932             [ATTTTCAACGCTGTTGCTGCTACAGTAATCCCATCTCGACGAGTGTGTGCACACGCGTTGGGAGAGTAGGCCTCCGAAACCACGCGTTGGGAGAGTAGGCCTCCAAAACTACGCGTTGCTGCGACGTTTGCACGGACGGGCGTGCGATCAGGTTTTTGGGTAGCGCAAGGCGCGACTACTCACTGTTCGTCAACATCTACTTCACCTTCACCAATATGTCAAACACTGGAGACAACGGCAACACTGGATACAAGGAGAAGGAGGCTCCCGTCAATACCAACGGAGGCAATACTGCCTCAAACTCCAGCGGATGACCATTCTTGGGGTGGAGTTCTACTTCAGCGACAGCAACCTCCCGCGCGATAAGTTCCTGAGGGAGACGGTCGAGCAGCGCGAAGATGGATGTAAATGATCTCTCGCGCAGTACATTTTCCACGCGGATTGCTTTTCTCCGGCGCGATGATTGAGTGCTGAACTTAGCGTCTTTTTTTCTTCTTCTCATTTTGTTGGAAATGTGCAGTGGTAAGCTTGGCTTTGATATGCTCTTTCGCGCGGATGAAGTCGCACCTCGGGCTGGACGCCGCCGTGAAGCCCGAAACTGTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTACGTCGTTCCCAGATGCTTCGTATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAGCTGTTGAAGGCAGATGAAATCATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCATTGCCTTACAATGTAGAGCTGGAAGATGTCC                                                                                                           ]
[+] EMBL CA752966             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCGTGAAGCCCGAAACTGTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTACGTCGTTCCCAGATGCTTCGTATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAGCTGTTGAAGGCAGATGAAATCATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCATTGCCTTACAATGTAAAGCTGGAAGATGTCCAATCTTTCTTTGCGCAATATGCAAAGGTAAATAGTGTCAGGCTACCACGCCATATCGCAAACAAAAAACACTTCTGTGGCACTGCCTTAGTTGAATTTTCAGAAGAC]


>consensus_7764#0 ATTTTCAACGCTGTTGCTGCTACAGTAATCCCATCTCGACGAGTGTGTGCACACGCGTTG GGAGAGTAGGCCTCCGAAACCACGCGTTGGGAGAGTAGGCCTCCAAAACTACGCGTTGCT GCGACGTTTGCACGGACGGGCGTGCGATCAGGTTTTTGGGTAGCGCAAGGCGCGACTACT CACTGTTCGTCAACATCTACTTCACCTTCACCAATATGTCAAACACTGGAGACAACGGCA ACACTGGATACAAGGAGAAGGAGGCTCCCGTCAATACCAACGGAGGCAATACTGCCTCAA ACTCCAGCGGATGACCATTCTTGGGGTGGAGTTCTACTTCAGCGACAGCAACCTCCCGCG CGATAAGTTCCTGAGGGAGACGGTCGAGCAGCGCGAAGATGGATGTAAATGATCTCTCGC GCAGTACATTTTCCACGCGGATTGCTTTTCTCCGGCGCGATGATTGAGTGCTGAACTTAG CGTCTTTTTTTCTTCTTCTCATTTTGTTGGAAATGTGCAGTGGTAAGCTTGGCTTTGATA TGCTCTTTCGCGCGGATGAAGTCGCACCTCGGGCTGGACGCCGCCGTGAAGCCCGAAACT GTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTACGTCGTTCCCAGATGCTTCGT ATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAGCTGTTGAAGGCAGATGAAATC ATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCATTGCCTTACAATGTAGAGCTG GAAGATGTCCAATCTTTCTTTGCGCAATATGCAAAGGTAAATAGTGTCAGGCTACCACGC CATATCGCAAACAAAAAACACTTCTGTGGCACTGCCTTAGTTGAATTTTCAGAAGAC



consensusID : consensus_7764#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 778
fasta sequence
                              [TCTCATGAGCCTTGAAATTTGGTGGGGATTGTTAGATTTAATTGGGTAATTAATCCATTTAAATCAATTAAATCAAATAAATTCCAAGGCTCATTATGCTAGGAATTCATGTGAATTCATTTTTCTATGGGATATCAATGGGATGAAGAGTTTTGAGAATTAATCCATTTGATTAAGGAATTGGTAACTTATATCAATTAATCCTAATTGATGGATGGTTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTGCTCTATTCCTCTTCCTATTCCATTGGTAACTTACATCAATTACTCTTAATTGATTGTTGGTTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTGCTCCATTCCTCTTCCTATTCCATGACTCTTACTCTTCATCTTCCATTCCTCTTATAAAATGAGAATGGATTTGATTTCCCGCGAGAAAAAAGAAGACACACTTTCATCCATTTTCCAAAGCTGTTGTTGCTACGGTAATCCCATCCCGACGAGTGTGTGCACACGCGTTGGGAGAGTAGGCCTCCGAAACCACGCGTTGCTGCGACGTTTGCACAGACGGGCAGGCGATCAAGTTTTTGGGGAGCGCAAGGCGCGACTACTCACTGTTCGTCAACATCTACTTCATCTTCACCAACATGTCGAACACTGGAGACAAGGAGAAGGAGACTCCTGTCAACACCAACGGAGGCAATACTGCCTCAAACTCCAGCGGAGGACAATTCTTAGGGTATAA]

[-] EMBL CB632064             [TCTCATGAGCCTTGAAATTTGGTGGGGATTGTTAGATTTAATTGGGTAATTAATCCATTTAAATCAATTAAATCAAATAAATTCCAAGGCTCATTATGCTAGGAATTCATGTGAATTCATTTTTCTATGGGATATCAATGGGATGAAGAGTTTTGAGAATTAATCCATTTGATTAAGGAATTGGTAACTTATATCAATTAATCCTAATTGATGGATGGTTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTGCTCTATTCCTCTTCCTATTCCATTGGTAACTTACATCAATTACTCTTAATTGATTGTTGGTTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTGCTCCATTCCTCTTCCTATTCCATGACTCTTACTCTTCATCTTCCATTCCTCTTATAAAATGAGAATGGATTTGATTTCCCGCGAGAAAAAAGAAGACACACTTTCATCCATTTTCCAAAGCTGTTGTTGCTACGGTAATCCCATCCCGACGAGTGTGTGCACACGCGTTGGGAGAGTAGGCCTCCGAAACCACGCGTTGCTGCGACGTTTGCACAGACGGGCAGGCGATCAAGTTTTTGGGGAGCGCAAGGCGCGACTACTCACTGTTCGTCAACATCTACTTCATCTTCACCAACATGTCGAACACTGGAGACAAGGAGAAGGAGACTCCTGTCAACACCAACGGAGGCAATACTGCCTCAAACTCCAGCGGAGGACAATTCTTAGGGTATAA]
[+] EMBL OSC103641            [                                                                                                                                                                                                                                                                ccgGACAATTAGTTGCTCTATTCCTCTTCCTATTCCATTGGTAACTTACATCAATTACTCTTAATTGATTGTTGGTTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTGCTCCATTCCTCTTCCTATTCCATGACTCTTACTCTTCATCTTCCATTTCTCTTATAAAATGAGAATGGATTTGATCTCCCGCGAG AAGAAGAAGACACACTTTCATCCATTTTAAAAAGCTGTTGCTGCTACGGTAATCCCATC                                                                                                                                                                                                                                                         ]


>consensus_7764#1 TCTCATGAGCCTTGAAATTTGGTGGGGATTGTTAGATTTAATTGGGTAATTAATCCATTT AAATCAATTAAATCAAATAAATTCCAAGGCTCATTATGCTAGGAATTCATGTGAATTCAT TTTTCTATGGGATATCAATGGGATGAAGAGTTTTGAGAATTAATCCATTTGATTAAGGAA TTGGTAACTTATATCAATTAATCCTAATTGATGGATGGTTGATGGTTGTGTAGTGGAGGA TGGTTCATGGCTAGTTGATGACAATTAGTTGCTCTATTCCTCTTCCTATTCCATTGGTAA CTTACATCAATTACTCTTAATTGATTGTTGGTTGATGGTTGTGTAGTGGAGGATGGTTCA TGGCTAGTTGATGACAATTAGTTGCTCCATTCCTCTTCCTATTCCATGACTCTTACTCTT CATCTTCCATTCCTCTTATAAAATGAGAATGGATTTGATTTCCCGCGAGAAAAAAGAAGA CACACTTTCATCCATTTTCCAAAGCTGTTGTTGCTACGGTAATCCCATCCCGACGAGTGT GTGCACACGCGTTGGGAGAGTAGGCCTCCGAAACCACGCGTTGCTGCGACGTTTGCACAG ACGGGCAGGCGATCAAGTTTTTGGGGAGCGCAAGGCGCGACTACTCACTGTTCGTCAACA TCTACTTCATCTTCACCAACATGTCGAACACTGGAGACAAGGAGAAGGAGACTCCTGTCA ACACCAACGGAGGCAATACTGCCTCAAACTCCAGCGGAGGACAATTCTTAGGGTATAA



consensusID : consensus_7764#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence
                              [CGACANAACCTCCCGCGCGATAAGTTCCTGAGGGAGNCGGTCGAGCAGCGCGAAGATGGATTGGTAAGCTTGGCTTTNATATGCTCTTTCGCGCGGAAGAAGTCGCACCTCGGGCTGGACGCCGCCGTGAAGCCCGAAACTNTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTACGTCGTTCCCAGATGCTTCGTATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAGCTGTTGAAGGCAGATGAAATCATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCATTGCCTTACAAATGTAAAAGCTGGAAGATGTCCAATCCTTTCTTTGCGGCAATATGCAAAAGGTAAATAGTGTCAGGCTACCACGCCATATCTTAAAACAAAA]

[+] EMBL OSC385               [CGACANAACCTCCCGCGCGATAAGTTCCTGAGGGAGNCGGTCGAGCAGCGCGAAGATGGATTGGTAAGCTTGGCTTTNATATGCTCTTTCGCGCGGAAGAAGTCGCACCTCGGGCTGGACGCCGCCGTGAAGCCCGAAACTNTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTACGTCGTTCCCAGATGCTTCGTATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAGCTGTTGAAGGCAGATGAAATCATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCATTGCCTTACAAATGTAAAAGCTGGAAGATGTCCAATCCTTTCTTTGCGGCAATATGCAAAAGGTAAATAGTGTCAGGCTACCACGCCATATCTTAAAACAAAA]


>consensus_7764#2 CGACANAACCTCCCGCGCGATAAGTTCCTGAGGGAGNCGGTCGAGCAGCGCGAAGATGGA TTGGTAAGCTTGGCTTTNATATGCTCTTTCGCGCGGAAGAAGTCGCACCTCGGGCTGGAC GCCGCCGTGAAGCCCGAAACTNTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTA CGTCGTTCCCAGATGCTTCGTATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAG CTGTTGAAGGCAGATGAAATCATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCA TTGCCTTACAAATGTAAAAGCTGGAAGATGTCCAATCCTTTCTTTGCGGCAATATGCAAA AGGTAAATAGTGTCAGGCTACCACGCCATATCTTAAAACAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7764#0      ATTTTCAACGCTGTTGCTGCTACAGTAATCCCATCTCGACGAGTGTGTGCACACGCGTTG 60
consensus_7764#2      ------------------------------------------------------------
consensus_7764#1      ------------------------------------------------------------
                                                                                  

consensus_7764#0      GGAGAGTAGGCCTCCGAAACCACGCGTTGGGAGAGTAGGCCTCCAAAACTACGCGTTGCT 120
consensus_7764#2      ------------------------------------------------------------
consensus_7764#1      -----------------------------TCTCATGAGCCTTGAAATTTGGTGGGGATTG 31
                                                                                  

consensus_7764#0      GCGACGTTTGCACGGACGGGCGTGCGATCAGGTTTTTGGGTAGCGCAAGGCGCGACTACT 180
consensus_7764#2      ------------------------------------------------------------
consensus_7764#1      TTAGATTTAATTGGGTAATTAATCCATTTAAATCAATTAAATCAAATAAATTCCAAGGCT 91
                                                                                  

consensus_7764#0      CACTGTTCGTCAACATCTACTTCACCTTCACCAATATGTCAAACACTGGAGACAACGGCA 240
consensus_7764#2      ------------------------------------------------------------
consensus_7764#1      CATTATGCTAGGAATTCATGTGAATTCATTTTTCTATGGGATATCAATGGGATGAAGAGT 151
                                                                                  

consensus_7764#0      ACACTGGATACAAGGAGAAGGAGGCTCCCGTCAATACCAACGGAGGCAATACTGCCTCAA 300
consensus_7764#2      ------------------------------------------------------------
consensus_7764#1      TTTGAGAATTAATCCATTTGATTAAGGAATTGGTAACTTATATCAATTAATCCTAATTGA 211
                                                                                  

consensus_7764#0      ACTCCAGCGGATGACCATTCTTGGGGTGGAGTTCTACTTCAGCGACAGCAACCTCCCGCG 360
consensus_7764#2      ------------------------------------------------------------
consensus_7764#1      TGGATGGTTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTG 271
                                                                                  

consensus_7764#0      CGATAAGTTCCTGAGGGAGACGGTCGAGCAGCGCGAAGATGGATGTAAATGATCTCTCGC 420
consensus_7764#2      ------------------------------------------------------------
consensus_7764#1      CTCTATTCCTCTTCCTATTCCATTGGTAACTTACATCAATTACTCTTAATTGATTGTTGG 331
                                                                                  

consensus_7764#0      GCAGTACATTTTCCACGCGGATTGCTTTTCTCCGGCGCGATGATTGAGTGCTGAACTTAG 480
consensus_7764#2      -------------------------------------CGAC-ANAACCTCCCGCGCGATA 22
consensus_7764#1      TTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTGCTCCATT 391
                                                            **  *         *  *    

consensus_7764#0      CGT--CTTTTTTTCT-TCTTCTCATTTTGTTGGAAATGTGCAG-TGGTAAGCTTGGCTTT 536
consensus_7764#2      AGT--TCCTGAGGGA-GNCGGTCGAGCAGC-GCGAAGATGGAT-TGGTAAGCTTGGCTTT 77
consensus_7764#1      CCTCTTCCTATTCCATGACTCTTACTCTTCATCTTCCATTCCTCTTATAAAATGAGAATG 451
                        *     *            *                *     *  ***  *  *  * 

consensus_7764#0      GATATGCTCTTTCGCGCGGAT---GAAGTCGCACCTCGGGCTGGACGCC---GCCGTGAA 590
consensus_7764#2      NATATGCTCTTTCGCGCGGAA---GAAGTCGCACCTCGGGCTGGACGCC---GCCGTGAA 131
consensus_7764#1      GATTTGATTTCCCGCGAGAAAAAAGAAGACACACTTTCATCCATTTTCCAAAGCTGTTGT 511
                       ** ** * *  **** * *    **** * *** *    *      **   ** **   

consensus_7764#0      GCCCGAAACTGTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTACGTCGTTCCCA 650
consensus_7764#2      GCCCGAAACTNTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTACGTCGTTCCCA 191
consensus_7764#1      TGCTACGGTAATCCCATCCCGACGAGTGTGTGCACACGCGTTGGGA--GAGTAGGCCTCC 569
                        *        * ***        ****   ***   **   **      ** *  * * 

consensus_7764#0      GATGCTTCGTATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAGCTGTTGAAGGC 710
consensus_7764#2      GATGCTTCGTATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAGCTGTTGAAGGC 251
consensus_7764#1      GAAACCACGCGTTGCTGCG-ACGTTTGCACAGACGGGCAGGCGATCAAGTTTTTGGGGAG 628
                      **  *  **  *  * * * * *     *  *  ** *  ** *   ** * ***  *  

consensus_7764#0      AGATGAAATCATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCATTGCCTTAC-- 768
consensus_7764#2      AGATGAAATCATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCATTGCCTTAC-- 309
consensus_7764#1      CGCAAGGCGCGACTACTCACTG--TTCGTCAACATCTACTTCATCTTCACCAACATGTCG 686
                       *       *  * *   * **   **    ***  * ** * **  **    * *    

consensus_7764#0      AA-TGTAGA-GCTGGAAGATGTCCAATC-TTTCTTTGCG-CAATATGCAAA-GGTAAATA 823
consensus_7764#2      AAATGTAAAAGCTGGAAGATGTCCAATCCTTTCTTTGCGGCAATATGCAAAAGGTAAATA 369
consensus_7764#1      AACACTGGAGACAAGGAGAAGGAGACTCCTGTCAACACCAACGGAGGCAATACTGCCTCA 746
                      **   *  *  *  * *** *   * ** * **    *      * ****         *

consensus_7764#0      GTGTCAGGCTACCACGCCATATCGCAAACAAAAAACACTTCTGTGGCACTGCCTTAGTTG 883
consensus_7764#2      GTGTCAGGCTACCACGCCATATCTTAAAACAAAA-------------------------- 403
consensus_7764#1      AACTCCAGCGG--AGGACAATTCTTAGGGTATAA-------------------------- 778
                         **  **    * * **  **  *    * **                          

consensus_7764#0      AATTTTCAGAAGAC 897
consensus_7764#2      --------------
consensus_7764#1      --------------
                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)