These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7764#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 897 fasta sequence [ATTTTCAACGCTGTTGCTGCTACAGTAATCCCATCTCGACGAGTGTGTGCACACGCGTTGGGAGAGTAGGCCTCCGAAACCACGCGTTGGGAGAGTAGGCCTCCAAAACTACGCGTTGCTGCGACGTTTGCACGGACGGGCGTGCGATCAGGTTTTTGGGTAGCGCAAGGCGCGACTACTCACTGTTCGTCAACATCTACTTCACCTTCACCAATATGTCAAACACTGGAGACAACGGCAACACTGGATACAAGGAGAAGGAGGCTCCCGTCAATACCAACGGAGGCAATACTGCCTCAAACTCCAGCGGATGACCATTCTTGGGGTGGAGTTCTACTTCAGCGACAGCAACCTCCCGCGCGATAAGTTCCTGAGGGAGACGGTCGAGCAGCGCGAAGATGGATGTAAATGATCTCTCGCGCAGTACATTTTCCACGCGGATTGCTTTTCTCCGGCGCGATGATTGAGTGCTGAACTTAGCGTCTTTTTTTCTTCTTCTCATTTTGTTGGAAATGTGCAGTGGTAAGCTTGGCTTTGATATGCTCTTTCGCGCGGATGAAGTCGCACCTCGGGCTGGACGCCGCCGTGAAGCCCGAAACTGTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTACGTCGTTCCCAGATGCTTCGTATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAGCTGTTGAAGGCAGATGAAATCATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCATTGCCTTACAATGTAGAGCTGGAAGATGTCCAATCTTTCTTTGCGCAATATGCAAAGGTAAATAGTGTCAGGCTACCACGCCATATCGCAAACAAAAAACACTTCTGTGGCACTGCCTTAGTTGAATTTTCAGAAGAC] [+] EMBL CB632932 [ATTTTCAACGCTGTTGCTGCTACAGTAATCCCATCTCGACGAGTGTGTGCACACGCGTTGGGAGAGTAGGCCTCCGAAACCACGCGTTGGGAGAGTAGGCCTCCAAAACTACGCGTTGCTGCGACGTTTGCACGGACGGGCGTGCGATCAGGTTTTTGGGTAGCGCAAGGCGCGACTACTCACTGTTCGTCAACATCTACTTCACCTTCACCAATATGTCAAACACTGGAGACAACGGCAACACTGGATACAAGGAGAAGGAGGCTCCCGTCAATACCAACGGAGGCAATACTGCCTCAAACTCCAGCGGATGACCATTCTTGGGGTGGAGTTCTACTTCAGCGACAGCAACCTCCCGCGCGATAAGTTCCTGAGGGAGACGGTCGAGCAGCGCGAAGATGGATGTAAATGATCTCTCGCGCAGTACATTTTCCACGCGGATTGCTTTTCTCCGGCGCGATGATTGAGTGCTGAACTTAGCGTCTTTTTTTCTTCTTCTCATTTTGTTGGAAATGTGCAGTGGTAAGCTTGGCTTTGATATGCTCTTTCGCGCGGATGAAGTCGCACCTCGGGCTGGACGCCGCCGTGAAGCCCGAAACTGTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTACGTCGTTCCCAGATGCTTCGTATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAGCTGTTGAAGGCAGATGAAATCATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCATTGCCTTACAATGTAGAGCTGGAAGATGTCC ] [+] EMBL CA752966 [ CCGTGAAGCCCGAAACTGTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTACGTCGTTCCCAGATGCTTCGTATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAGCTGTTGAAGGCAGATGAAATCATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCATTGCCTTACAATGTAAAGCTGGAAGATGTCCAATCTTTCTTTGCGCAATATGCAAAGGTAAATAGTGTCAGGCTACCACGCCATATCGCAAACAAAAAACACTTCTGTGGCACTGCCTTAGTTGAATTTTCAGAAGAC] consensusID : consensus_7764#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 778 fasta sequence [TCTCATGAGCCTTGAAATTTGGTGGGGATTGTTAGATTTAATTGGGTAATTAATCCATTTAAATCAATTAAATCAAATAAATTCCAAGGCTCATTATGCTAGGAATTCATGTGAATTCATTTTTCTATGGGATATCAATGGGATGAAGAGTTTTGAGAATTAATCCATTTGATTAAGGAATTGGTAACTTATATCAATTAATCCTAATTGATGGATGGTTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTGCTCTATTCCTCTTCCTATTCCATTGGTAACTTACATCAATTACTCTTAATTGATTGTTGGTTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTGCTCCATTCCTCTTCCTATTCCATGACTCTTACTCTTCATCTTCCATTCCTCTTATAAAATGAGAATGGATTTGATTTCCCGCGAGAAAAAAGAAGACACACTTTCATCCATTTTCCAAAGCTGTTGTTGCTACGGTAATCCCATCCCGACGAGTGTGTGCACACGCGTTGGGAGAGTAGGCCTCCGAAACCACGCGTTGCTGCGACGTTTGCACAGACGGGCAGGCGATCAAGTTTTTGGGGAGCGCAAGGCGCGACTACTCACTGTTCGTCAACATCTACTTCATCTTCACCAACATGTCGAACACTGGAGACAAGGAGAAGGAGACTCCTGTCAACACCAACGGAGGCAATACTGCCTCAAACTCCAGCGGAGGACAATTCTTAGGGTATAA] [-] EMBL CB632064 [TCTCATGAGCCTTGAAATTTGGTGGGGATTGTTAGATTTAATTGGGTAATTAATCCATTTAAATCAATTAAATCAAATAAATTCCAAGGCTCATTATGCTAGGAATTCATGTGAATTCATTTTTCTATGGGATATCAATGGGATGAAGAGTTTTGAGAATTAATCCATTTGATTAAGGAATTGGTAACTTATATCAATTAATCCTAATTGATGGATGGTTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTGCTCTATTCCTCTTCCTATTCCATTGGTAACTTACATCAATTACTCTTAATTGATTGTTGGTTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTGCTCCATTCCTCTTCCTATTCCATGACTCTTACTCTTCATCTTCCATTCCTCTTATAAAATGAGAATGGATTTGATTTCCCGCGAGAAAAAAGAAGACACACTTTCATCCATTTTCCAAAGCTGTTGTTGCTACGGTAATCCCATCCCGACGAGTGTGTGCACACGCGTTGGGAGAGTAGGCCTCCGAAACCACGCGTTGCTGCGACGTTTGCACAGACGGGCAGGCGATCAAGTTTTTGGGGAGCGCAAGGCGCGACTACTCACTGTTCGTCAACATCTACTTCATCTTCACCAACATGTCGAACACTGGAGACAAGGAGAAGGAGACTCCTGTCAACACCAACGGAGGCAATACTGCCTCAAACTCCAGCGGAGGACAATTCTTAGGGTATAA] [+] EMBL OSC103641 [ ccgGACAATTAGTTGCTCTATTCCTCTTCCTATTCCATTGGTAACTTACATCAATTACTCTTAATTGATTGTTGGTTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTGCTCCATTCCTCTTCCTATTCCATGACTCTTACTCTTCATCTTCCATTTCTCTTATAAAATGAGAATGGATTTGATCTCCCGCGAG AAGAAGAAGACACACTTTCATCCATTTTAAAAAGCTGTTGCTGCTACGGTAATCCCATC ] consensusID : consensus_7764#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence [CGACANAACCTCCCGCGCGATAAGTTCCTGAGGGAGNCGGTCGAGCAGCGCGAAGATGGATTGGTAAGCTTGGCTTTNATATGCTCTTTCGCGCGGAAGAAGTCGCACCTCGGGCTGGACGCCGCCGTGAAGCCCGAAACTNTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTACGTCGTTCCCAGATGCTTCGTATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAGCTGTTGAAGGCAGATGAAATCATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCATTGCCTTACAAATGTAAAAGCTGGAAGATGTCCAATCCTTTCTTTGCGGCAATATGCAAAAGGTAAATAGTGTCAGGCTACCACGCCATATCTTAAAACAAAA] [+] EMBL OSC385 [CGACANAACCTCCCGCGCGATAAGTTCCTGAGGGAGNCGGTCGAGCAGCGCGAAGATGGATTGGTAAGCTTGGCTTTNATATGCTCTTTCGCGCGGAAGAAGTCGCACCTCGGGCTGGACGCCGCCGTGAAGCCCGAAACTNTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTACGTCGTTCCCAGATGCTTCGTATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAGCTGTTGAAGGCAGATGAAATCATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCATTGCCTTACAAATGTAAAAGCTGGAAGATGTCCAATCCTTTCTTTGCGGCAATATGCAAAAGGTAAATAGTGTCAGGCTACCACGCCATATCTTAAAACAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7764#0 ATTTTCAACGCTGTTGCTGCTACAGTAATCCCATCTCGACGAGTGTGTGCACACGCGTTG 60 consensus_7764#2 ------------------------------------------------------------ consensus_7764#1 ------------------------------------------------------------ consensus_7764#0 GGAGAGTAGGCCTCCGAAACCACGCGTTGGGAGAGTAGGCCTCCAAAACTACGCGTTGCT 120 consensus_7764#2 ------------------------------------------------------------ consensus_7764#1 -----------------------------TCTCATGAGCCTTGAAATTTGGTGGGGATTG 31 consensus_7764#0 GCGACGTTTGCACGGACGGGCGTGCGATCAGGTTTTTGGGTAGCGCAAGGCGCGACTACT 180 consensus_7764#2 ------------------------------------------------------------ consensus_7764#1 TTAGATTTAATTGGGTAATTAATCCATTTAAATCAATTAAATCAAATAAATTCCAAGGCT 91 consensus_7764#0 CACTGTTCGTCAACATCTACTTCACCTTCACCAATATGTCAAACACTGGAGACAACGGCA 240 consensus_7764#2 ------------------------------------------------------------ consensus_7764#1 CATTATGCTAGGAATTCATGTGAATTCATTTTTCTATGGGATATCAATGGGATGAAGAGT 151 consensus_7764#0 ACACTGGATACAAGGAGAAGGAGGCTCCCGTCAATACCAACGGAGGCAATACTGCCTCAA 300 consensus_7764#2 ------------------------------------------------------------ consensus_7764#1 TTTGAGAATTAATCCATTTGATTAAGGAATTGGTAACTTATATCAATTAATCCTAATTGA 211 consensus_7764#0 ACTCCAGCGGATGACCATTCTTGGGGTGGAGTTCTACTTCAGCGACAGCAACCTCCCGCG 360 consensus_7764#2 ------------------------------------------------------------ consensus_7764#1 TGGATGGTTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTG 271 consensus_7764#0 CGATAAGTTCCTGAGGGAGACGGTCGAGCAGCGCGAAGATGGATGTAAATGATCTCTCGC 420 consensus_7764#2 ------------------------------------------------------------ consensus_7764#1 CTCTATTCCTCTTCCTATTCCATTGGTAACTTACATCAATTACTCTTAATTGATTGTTGG 331 consensus_7764#0 GCAGTACATTTTCCACGCGGATTGCTTTTCTCCGGCGCGATGATTGAGTGCTGAACTTAG 480 consensus_7764#2 -------------------------------------CGAC-ANAACCTCCCGCGCGATA 22 consensus_7764#1 TTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTGCTCCATT 391 ** * * * consensus_7764#0 CGT--CTTTTTTTCT-TCTTCTCATTTTGTTGGAAATGTGCAG-TGGTAAGCTTGGCTTT 536 consensus_7764#2 AGT--TCCTGAGGGA-GNCGGTCGAGCAGC-GCGAAGATGGAT-TGGTAAGCTTGGCTTT 77 consensus_7764#1 CCTCTTCCTATTCCATGACTCTTACTCTTCATCTTCCATTCCTCTTATAAAATGAGAATG 451 * * * * * *** * * * consensus_7764#0 GATATGCTCTTTCGCGCGGAT---GAAGTCGCACCTCGGGCTGGACGCC---GCCGTGAA 590 consensus_7764#2 NATATGCTCTTTCGCGCGGAA---GAAGTCGCACCTCGGGCTGGACGCC---GCCGTGAA 131 consensus_7764#1 GATTTGATTTCCCGCGAGAAAAAAGAAGACACACTTTCATCCATTTTCCAAAGCTGTTGT 511 ** ** * * **** * * **** * *** * * ** ** ** consensus_7764#0 GCCCGAAACTGTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTACGTCGTTCCCA 650 consensus_7764#2 GCCCGAAACTNTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTACGTCGTTCCCA 191 consensus_7764#1 TGCTACGGTAATCCCATCCCGACGAGTGTGTGCACACGCGTTGGGA--GAGTAGGCCTCC 569 * * *** **** *** ** ** ** * * * consensus_7764#0 GATGCTTCGTATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAGCTGTTGAAGGC 710 consensus_7764#2 GATGCTTCGTATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAGCTGTTGAAGGC 251 consensus_7764#1 GAAACCACGCGTTGCTGCG-ACGTTTGCACAGACGGGCAGGCGATCAAGTTTTTGGGGAG 628 ** * ** * * * * * * * * ** * ** * ** * *** * consensus_7764#0 AGATGAAATCATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCATTGCCTTAC-- 768 consensus_7764#2 AGATGAAATCATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCATTGCCTTAC-- 309 consensus_7764#1 CGCAAGGCGCGACTACTCACTG--TTCGTCAACATCTACTTCATCTTCACCAACATGTCG 686 * * * * * ** ** *** * ** * ** ** * * consensus_7764#0 AA-TGTAGA-GCTGGAAGATGTCCAATC-TTTCTTTGCG-CAATATGCAAA-GGTAAATA 823 consensus_7764#2 AAATGTAAAAGCTGGAAGATGTCCAATCCTTTCTTTGCGGCAATATGCAAAAGGTAAATA 369 consensus_7764#1 AACACTGGAGACAAGGAGAAGGAGACTCCTGTCAACACCAACGGAGGCAATACTGCCTCA 746 ** * * * * *** * * ** * ** * * **** * consensus_7764#0 GTGTCAGGCTACCACGCCATATCGCAAACAAAAAACACTTCTGTGGCACTGCCTTAGTTG 883 consensus_7764#2 GTGTCAGGCTACCACGCCATATCTTAAAACAAAA-------------------------- 403 consensus_7764#1 AACTCCAGCGG--AGGACAATTCTTAGGGTATAA-------------------------- 778 ** ** * * ** ** * * ** consensus_7764#0 AATTTTCAGAAGAC 897 consensus_7764#2 -------------- consensus_7764#1 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||