|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7765#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1742 fasta sequence
[CCCACACAGACTGCTCCGAGCTCTCCATTCCCGCGACCCATTGACCCATCGGGATCCTGGAGCGCGCCAATGGCGGCGGCCGCCGTGCTCCTGGCCGCCATCCTACTGGCGCTGTCCCCTCTCCCCATGTCCCTCTCCGCCGGCGGCGGCGGCGGAGGTGACACTGGCACGGCCGAGGCGGCCGCGGACCGAATCACGGCCCTGCCGGGGCAGCCACGGGTCAACTTCTCCATGTACTCCGGGTACGTCACCGTCGACGCGGCCGCCGGGCGCGCGCTCTTCTACTGGCTCATCGAGGCCGCCGACCCGGCGTCCGCGCCGCTCGTGCTCTGGCTCAACGGCGGGCCCGGGTGCTCCTCCGTTGGGTACGGCGCGTCCGAGGAGCTCGGCGCGTTCCGGATCAACCCCGACGGGAGGTCGCTCTACTTGAACCCCTACCCCTGGAACAGAGTGGCCAACATGCTGTTCTTGGACTCCCCCGCCGGCGTCGGCTACTCCTACTCCAACACCACCTCCGATCTGTTCACTGCTGGTGATAACAAGACAGCTCATGATTCATATGCTTTCTTGGTGAATTGGTTGGAACGGTTTCCGCAGTACAAGTACCGTGATTTCTACATCGCAGGCGAGAGCTATGGAGGGCACTATGTCCCTCAGTTGTCTCAGCTAGTGTACCGGAATAACAAAGACGTTGAAAAGCCTATCCTAAACTTTAAAGGCTTTATGGTTGGAAATGCGGTAATCGATGATTACCATGACTACGTTGGCACATTTGAGTACTGGTGGACACACGGGCTGATATCTGATGATACATATCAGAAGCTGCAGGTGGCCTGTGATTTTGAATCATCTGCTCACGCATCAGAAGCATGTAACAAGATTTATGAAGTGGCTGAGGCTGAACAAGGGAACATTGATGCATACAGCATCTATACGCCTACCTGTAAAAAAACTTCATTTCTCAAACGCAGGTTAATAAGGGGTAACTCGCCATGGTTGCCTAGAGGATATGATCCCTGCACTGAAAAGTACTCTACGAAGTACTACAACCTACCAGAAGTGCAAAAAGCATTTCATGCCAATGTCACTGGAATACCGTATGCCTGGACCACCTGCAGTGATGACTTGTTTTATTATTGGAAAGATTCACCAAGGTCCATGCTTCCTATTTACCGTGAGCTGATTGCGGCTGGTCTAAGAATATGGGTTTTCAGCGGCG-A-CGCTGATTCTGTAGT-CCCCCTCACTGCGACAAGATACTCCATTGATGCACTCTATCTACCTACTGTCACTAACTGGTATCCTTGGTATGATGATGAGGAGGTTGCTGGTTGGTGTCAAGTGTATCAAGGTTTGACACTGGTGACGATCCGAGGAGCAGGGCATGAAGTTCCTCTCCATCGTCCACGGCAAGCCTTAAAACTCTTTGAGCATTTCCTACAAGATAAGCCCATGCCTCAACCTGTACATAGCATTCAATCCTTTTAGAATTTTCTTCCATTTAAAGTGGAAGATCATGCCACGAGGCCATGATGTTGTATAATTTGAAGTCTGTCTCCCACATTTTCTGATGAACAGATGAAATCTGTTCAAATGACAGCTGGC----CATCATTCTTAATTTATTCAACTATATGTTCCTAGTGACTTCAGAAATAATGCCCATCCTGTTGAATATTTCCTTTTCGGTTTATGTATACCACAAGACCAAGATGGAAATATAGTTTTTCATTTTATGAAAAAAAAAAA]
[+] EMBL AK071183 [CCCACACAGACTGCTCCGAGCTCTCCATTCCCGCGACCCATTGACCCATCGGGATCCTGGAGCGCGCCAATGGCGGCGGCCGCCGTGCTCCTGGCCGCCATCCTACTGGCGCTGTCCCCTCTCCCCATGTCCCTCTCCGCCGGCGGCGGCGGCGGAGGTGACACTGGCACGGCCGAGGCGGCCGCGGACCGAATCACGGCCCTGCCGGGGCAGCCACGGGTCAACTTCTCCATGTACTCCGGGTACGTCACCGTCGACGCGGCCGCCGGGCGCGCGCTCTTCTACTGGCTCATCGAGGCCGCCGACCCGGCGTCCGCGCCGCTCGTGCTCTGGCTCAACGGCGGGCCCGGGTGCTCCTCCGTTGGGTACGGCGCGTCCGAGGAGCTCGGCGCGTTCCGGATCAACCCCGACGGGAGGTCGCTCTACTTGAACCCCTACCCCTGGAACAGAGTGGCCAACATGCTGTTCTTGGACTCCCCCGCCGGCGTCGGCTACTCCTACTCCAACACCACCTCCGATCTGTTCACTGCTGGTGATAACAAGACAGCTCATGATTCATATGCTTTCTTGGTGAATTGGTTGGAACGGTTTCCGCAGTACAAGTACCGTGATTTCTACATCGCAGGCGAGAGCTATGGAGGGCACTATGTCCCTCAGTTGTCTCAGCTAGTGTACCGGAATAACAAAGACGTTGAAAAGCCTATCCTAAACTTTAAAGGCTTTATGGTTGGAAATGCGGTAATCGATGATTACCATGACTACGTTGGCACATTTGAGTACTGGTGGACACACGGGCTGATATCTGATGATACATATCAGAAGCTGCAGGTGGCCTGTGATTTTGAATCATCTGCTCACGCATCAGAAGCATGTAACAAGATTTATGAAGTGGCTGAGGCTGAACAAGGGAACATTGATGCATACAGCATCTATACGCCTACCTGTAAAAAAACTTCATTTCTCAAACGCAGGTTAATAAGGGGTAACTCGCCATGGTTGCCTAGAGGATATGATCCCTGCACTGAAAAGTACTCTACGAAGTACTACAACCTACCAGAAGTGCAAAAAGCATTTCATGCCAATGTCACTGGAATACCGTATGCCTGGACCACCTGCAGTGATGACTTGTTTTATTATTGGAAAGATTCACCAAGGTCCATGCTTCCTATTTACCGTGAGCTGATTGCGGCTGGTCTAAGAATATGGGTTTTCAGCGGCG A CGCTGATTCTGTAGT CCCCCTCACTGCGACAAGATACTCCATTGATGCACTCTATCTACCTACTGTCACTAACTGGTATCCTTGGTATGATGATGAGGAGGTTGCTGGTTGGTGTCAAGTGTATCAAGGTTTGACACTGGTGACGATCCGAGGAGCAGGGCATGAAGTTCCTCTCCATCGTCCACGGCAAGCCTTAAAACTCTTTGAGCATTTCCTACAAGATAAGCCCATGCCTCAACCTGTACATAGCATTCAATCCTTTTAGAATTTTCTTCCATTTAAAGTGGAAGATCATGCCACGAGGCCATGATGTTGTATAATTTGAAGTCTGTCTCCCACATTTTCTGATGAACAGATGAAATCTGTTCAAATGACAGCTGGC CATCATTCTTAATTTATTCAACTATATGTTCCTAGTGACTTCAGAAATAATGCCCATCCTGTTGAATATTTCCTTTTCGGTTTATGTATACCACAAGACCAAGATGGAAATATAGTTTTTCATTTTATG ]
[+] EMBL CB000687 [ TCACTGCTGGTGATAACAAGACAGCTCATGATTCATATGCTTTCTTGGTGAATTGGTTGGAACGGTTTCCGCAGTACAAGTACCGTGATTTCTACATCGCAGGCGAGAGCTATGGAGGGCACTATGTCCCTCAGTTGTCTCAGCTAGTGTACCGGAATAACAAAGACGTTGAAAAGCCTATCCTAAACTTTAAAGGCTTTATGGTTGGAAATGCGGTAATCGATGATTACCATGACTACGTTGGCACATTTGAGTACTGGTGGACACACGGGCTGATATCTGATGATACATATCAGAAGCTGCAGGTGGCCTGTGATTTTGAATCATCTGCTCACGCATCAGAAGCATGTAACAAGATTTATGAAGTGGCTGAGGCTGAACAAGGGAACATTGATGCATACAGCATCTATACGCCTACCTGTAAAAAAACTTCATTTCTCAAACGCAGGTTAATAAGGGGTAACTCGCCATGGTTGCCTAGAGGATATGATCCCTGCACTGAAAAGTACTCTACGAAGTACTACAACCTACCAGAAGTGCAAAAAGCATTTCATGCCAATGTCACTGGAATACCGTATGCCTGGACCACCTGCAGTGATGACTTGTTTTATTATTGGAAAGATTCACCAAGGTCCATGCTTCCTATTTACCGTGAGCTGATT ]
[+] EMBL CB000535 [ TCACTGCTGGTGATAACAAGACAGCTCATGATTCATATGCCCTCTTGGTGAATTGGTTGGAACGGTTTCCGCAGTACAAGTACCGTGATTTCTACATCGCAGGCGAGAGCTATGGAGGGCACTATGTCCCTCAGTTGTCTCAGCTAGTGTACCGGAATAACAAAGACGTTGAAAAGCCTATCCTAAACTTTAAAGGCTTTATGGTTGGAAATGCGGTAATCGATGATTACCATGACTACGTTGGCACATTTGAGTACTGGTGGACACACGGGCTGATATCTGATGATACATATCAGAAGCTGCAGGTGGCCTGTGATTTTGAATCATCTGCTCACGCATCAGAAGCATGTAACAAGATTTATGAAGTGGCTGAGGCTGAACAAGGGAACATTGATGCATACAGCATCTATACGCCTACCTGTAAAAAAACTTCATTTCTCAAACGCAGGTTAATAAGGGGTAACTCGCCATGGTTGCCTAGAGGATATGATCCCTGCACTGAAAAGTACTCTA ]
[-] EMBL CA763218 [ AATGTCCCGCGAATACCGTATGCTTGGGCGCCCTGCAATGATGGCTTGTTTT TTATTGGAAAGGTTCCCCAAGGTCCATGCTTCCTATTTACCGTGAGCTGATTGCGGCTGGTTTAAGAATATGGGTTTTCA AGGCGCAGCGCTGATTCTGTAGTCCCCCCTCGCTGCGACAAGATACTCCATTGATGCCCTCTATTTACCTACTGTCACTAACTGGTATCCTTGGTATAATGATGAGGAGGTTGCTGGTTGGTGTCAAGTGTATCAAGGTTTGACCCTGGTGACGATCCGAGGAGCGGGGCATGAAGTTCCTTTCCATCGTCCACGGCAAGCCTTAAAACTCTTTGAGCATTTCCTACAAGATAAGCCCATGCCTCAGCCTTTACATAGCATTCAATCCTTTTAGAATTTTCTTCCAGTTAAAGTGGAAGATCATGCCCCGAGGCCATCATGTTGTATAATTTGAAGTCTGTCTCCCACATTTTTTGATGAACAGATGAAATCTGTTCAAATGACAGCTGGCCCCTCATCATTCTTAATTTATTCAACTATATGTTCCTAGTGACTTCAGAAATAATGCCCATCCTGTTGAATATTTCCTTTTCGGTTTATGTATACCCCAAGACCAAGATGGAAATATAGTTTTTCCTTTTATGAAAAAAAAAAA]
consensusID : consensus_7765#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence
[GGCTGCAGGTTGGAACGGTTTCCGCAGTACAAGTACCGTGATTTCTACATCGCAGGCGAGAGCTATGGAGGGCACTATGTCCCTCAGTTGTCTCAGCTAGTGTACCGGAATAACAAAGACGTTGAAAAGCCTATCCTAAACTTTAAAGGCTTTATGAAGCTGCAGGTGGCCTGTGATTTTGAATCATCTGCGCACGCATCAGAAGCATGTAACAAGATTTATGAAG]
[+] EMBL CA752967 [GGCTGCAGGTTGGAACGGTTTCCGCAGTACAAGTACCGTGATTTCTACATCGCAGGCGAGAGCTATGGAGGGCACTATGTCCCTCAGTTGTCTCAGCTAGTGTACCGGAATAACAAAGACGTTGAAAAGCCTATCCTAAACTTTAAAGGCTTTATGAAGCTGCAGGTGGCCTGTGATTTTGAATCATCTGCGCACGCATCAGAAGCATGTAACAAGATTTATGAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7765#0 CCCACACAGACTGCTCCGAGCTCTCCATTCCCGCGACCCATTGACCCATCGGGATCCTGG 60
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 AGCGCGCCAATGGCGGCGGCCGCCGTGCTCCTGGCCGCCATCCTACTGGCGCTGTCCCCT 120
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 CTCCCCATGTCCCTCTCCGCCGGCGGCGGCGGCGGAGGTGACACTGGCACGGCCGAGGCG 180
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 GCCGCGGACCGAATCACGGCCCTGCCGGGGCAGCCACGGGTCAACTTCTCCATGTACTCC 240
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 GGGTACGTCACCGTCGACGCGGCCGCCGGGCGCGCGCTCTTCTACTGGCTCATCGAGGCC 300
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 GCCGACCCGGCGTCCGCGCCGCTCGTGCTCTGGCTCAACGGCGGGCCCGGGTGCTCCTCC 360
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 GTTGGGTACGGCGCGTCCGAGGAGCTCGGCGCGTTCCGGATCAACCCCGACGGGAGGTCG 420
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 CTCTACTTGAACCCCTACCCCTGGAACAGAGTGGCCAACATGCTGTTCTTGGACTCCCCC 480
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 GCCGGCGTCGGCTACTCCTACTCCAACACCACCTCCGATCTGTTCACTGCTGGTGATAAC 540
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 AAGACAGCTCATGATTCATATGCTTTCTTGGTGAATTGGTTGGAACGGTTTCCGCAGTAC 600
consensus_7765#1 ------------------------------GGCTGCAGGTTGGAACGGTTTCCGCAGTAC 30
* ***********************
consensus_7765#0 AAGTACCGTGATTTCTACATCGCAGGCGAGAGCTATGGAGGGCACTATGTCCCTCAGTTG 660
consensus_7765#1 AAGTACCGTGATTTCTACATCGCAGGCGAGAGCTATGGAGGGCACTATGTCCCTCAGTTG 90
************************************************************
consensus_7765#0 TCTCAGCTAGTGTACCGGAATAACAAAGACGTTGAAAAGCCTATCCTAAACTTTAAAGGC 720
consensus_7765#1 TCTCAGCTAGTGTACCGGAATAACAAAGACGTTGAAAAGCCTATCCTAAACTTTAAAGGC 150
************************************************************
consensus_7765#0 TTTATGGTTGGAAATGCGGTAATCGATGATTACCATGACTACGTTGGCACATTTGAGTAC 780
consensus_7765#1 TTTATG------------------------------------------------------ 156
******
consensus_7765#0 TGGTGGACACACGGGCTGATATCTGATGATACATATCAGAAGCTGCAGGTGGCCTGTGAT 840
consensus_7765#1 ---------------------------------------AAGCTGCAGGTGGCCTGTGAT 177
*********************
consensus_7765#0 TTTGAATCATCTGCTCACGCATCAGAAGCATGTAACAAGATTTATGAAGTGGCTGAGGCT 900
consensus_7765#1 TTTGAATCATCTGCGCACGCATCAGAAGCATGTAACAAGATTTATGAAG----------- 226
************** **********************************
consensus_7765#0 GAACAAGGGAACATTGATGCATACAGCATCTATACGCCTACCTGTAAAAAAACTTCATTT 960
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 CTCAAACGCAGGTTAATAAGGGGTAACTCGCCATGGTTGCCTAGAGGATATGATCCCTGC 1020
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 ACTGAAAAGTACTCTACGAAGTACTACAACCTACCAGAAGTGCAAAAAGCATTTCATGCC 1080
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 AATGTCACTGGAATACCGTATGCCTGGACCACCTGCAGTGATGACTTGTTTTATTATTGG 1140
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 AAAGATTCACCAAGGTCCATGCTTCCTATTTACCGTGAGCTGATTGCGGCTGGTCTAAGA 1200
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 ATATGGGTTTTCAGCGGCGACGCTGATTCTGTAGTCCCCCTCACTGCGACAAGATACTCC 1260
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 ATTGATGCACTCTATCTACCTACTGTCACTAACTGGTATCCTTGGTATGATGATGAGGAG 1320
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 GTTGCTGGTTGGTGTCAAGTGTATCAAGGTTTGACACTGGTGACGATCCGAGGAGCAGGG 1380
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 CATGAAGTTCCTCTCCATCGTCCACGGCAAGCCTTAAAACTCTTTGAGCATTTCCTACAA 1440
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 GATAAGCCCATGCCTCAACCTGTACATAGCATTCAATCCTTTTAGAATTTTCTTCCATTT 1500
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 AAAGTGGAAGATCATGCCACGAGGCCATGATGTTGTATAATTTGAAGTCTGTCTCCCACA 1560
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 TTTTCTGATGAACAGATGAAATCTGTTCAAATGACAGCTGGCCATCATTCTTAATTTATT 1620
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 CAACTATATGTTCCTAGTGACTTCAGAAATAATGCCCATCCTGTTGAATATTTCCTTTTC 1680
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 GGTTTATGTATACCACAAGACCAAGATGGAAATATAGTTTTTCATTTTATGAAAAAAAAA 1740
consensus_7765#1 ------------------------------------------------------------
consensus_7765#0 AA 1742
consensus_7765#1 --
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||