|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7766#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1009 fasta sequence
[TGACGATTGCCATGGTTGATCTGATCCACGAGACGGACGACGCGATGGCCGAGGCGGAGCTGCTGCTGGAGCGCAGCCGGGCGATCACCCTGAACGGCCGAGACAAGCGAGGCCGCGCCCTCGTCAGGATCGTCGGCAAGTACTTCCCCGGTAAGCTGAGCTCGGCCTCGCTCGTCAGATCCCCGCAATTCCGATGCTTTTGCCGGCGGAAAAGTGACCCCGTTTCCTTTGTCGCGGCAGCGCGCGCGCTGGGCGGGCGGGCGGAGGCGGCGTTGAGGGGGTACGTGCGGAGGCGCGTGCTCCCGGAGATCGGGGAGCGGGAGTTCGTGGTCGCGTACGTCCACTCCCTCGTCGACCGCGGCGACAACTTCCCCGGCGTCGCAGCGATCCGCGCGGCGTACGAGGCGCTGCCTGCCGCGGCCAAGGAGCGGCTGCGCGCGGTGTACTTCGTGCACCCGGGATTCCAGGCCCGCCTCTTCTTCGCCACCTTGGGGCGATTCCTCTTCAGCTCCGGGTATGTACATACAACGAATCACTCCGTGTGTGCTGCACTACGATTCGTGGGTGAGGCGCTGGTGTTTACCGTGGTTTCCTTGGAATTTTGGATCTTGCAGGCTGTACGAGAAGCTGAGGTACATGAGCAGGCTCGAGTACCTGTGGGAGCACGTGAGCAAGGGGGAGATGGAGGTCCCGGAATGCGCGCGCCGGCATGACGAGGAGCTCGAGCGCCGCCCGCTCATGGACTACGGCATCGAGGCTACTGACCGCCGGTGCATGTTCGACGCCGCGTCCATGGACACCTCGGCGTCCCTGCACTCGCTCCGGTGCATCTCGTAATCGTGGTGGCCGCTCGACTGTAGCATCCGTAGCTGGCCTCGCCCCGGTCCTATATTCGTAGCTAGCGAAGGCACTGCCGCACTGTCGTAGTTTGCAGGCCCTGTTGTTCTTCGTTCCATCTGTACAAAATAGTAGTATTTGTGGAAGTAAAAGAGATAATAAAGAGAAACAG]
[+] EMBL AK060958 [TGACGATTGCCATGGTTGATCTGATCCACGAGACGGACGACGCGATGGCCGAGGCGGAGCTGCTGCTGGAGCGCAGCCGGGCGATCACCCTGAACGGCCGAGACAAGCGAGGCCGCGCCCTCGTCAGGATCGTCGGCAAGTACTTCCCCGGTAAGCTGAGCTCGGCCTCGCTCGTCAGATCCCCGCAATTCCGATGCTTTTGCCGGCGGAAAAGTGACCCCGTTTCCTTTGTCGCGGCAGCGCGCGCGCTGGGCGGGCGGGCGGAGGCGGCGTTGAGGGGGTACGTGCGGAGGCGCGTGCTCCCGGAGATCGGGGAGCGGGAGTTCGTGGTCGCGTACGTCCACTCCCTCGTCGACCGCGGCGACAACTTCCCCGGCGTCGCAGCGATCCGCGCGGCGTACGAGGCGCTGCCTGCCGCGGCCAAGGAGCGGCTGCGCGCGGTGTACTTCGTGCACCCGGGATTCCAGGCCCGCCTCTTCTTCGCCACCTTGGGGCGATTCCTCTTCAGCTCCGGGTATGTACATACAACGAATCACTCCGTGTGTGCTGCACTACGATTCGTGGGTGAGGCGCTGGTGTTTACCGTGGTTTCCTTGGAATTTTGGATCTTGCAGGCTGTACGAGAAGCTGAGGTACATGAGCAGGCTCGAGTACCTGTGGGAGCACGTGAGCAAGGGGGAGATGGAGGTCCCGGAATGCGCGCGCCGGCATGACGAGGAGCTCGAGCGCCGCCCGCTCATGGACTACGGCATCGAGGCTACTGACCGCCGGTGCATGTTCGACGCCGCGTCCATGGACACCTCGGCGTCCCTGCACTCGCTCCGGTGCATCTCGTAATCGTGGTGGCCGCTCGACTGTAGCATCCGTAGCTGGCCTCGCCCCGGTCCTATATTCGTAGCTAGCGAAGGCACTGCCGCACTGTCGTAGTTTGCAGGCCCTGTTGTTCTTCGTTCCATCTGTACAAAATAGTAGTATTTGTGGAAGTAAAAGAGATAATAAAGAGAAACAG]
consensusID : consensus_7766#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 869 fasta sequence
[GCCCCCCCACAAGAATTGGATAAGCTCGATTGACGATTGCCATGGTTGATCTGATCCACGAGACGGACGACGCGATGGCCGAGGCGGAGCTGCTGCTGGAGCGCAGCCGGGCGATCACCCTGAACGGCCGAGACAAGCGAGGCCGCGCCCTCGTCAGGATCGTCGGCAAGTACTTCCCCGCGCGCGCGCTGGGCGGGCGGGCGGAGGCGGCGTTGAGGGGGTACGTGCGGAGGCGCGTGCT-CCCGGAGATCGGGGAGCGGGAGTTCGTGGTCGTGTACGTCCACTCCCTCGTCGACCGCGGCGACAACTTCCCCGGCGTCGCAGCGATCCGCGCGGCGTACGAGGCGCTGCCTGCCGCGGCCAAGGAGCGGCTGCGCGCGGTGTACTTCGTGCACCCGGGATTCCAGGCCCGCCTCTTCTTCGCCACCTTGGGGCGATTCCTCTTCAGCTCCGGGCTGTACGAGAAGCTGAGGTACATGAGCAGGCTCGAGTACCTGTGGGAGCACGTGAGCAAGGGGGAGATGGAGGTCCCGGAATGCGCGCGCCGGCATGACGAGGAGCTCGAGCGCCGCCCGCTCATGGACTACGGCATCGAGGCTACTGACCGCCGGTGCATGTTCGACGCCGCGTCCATGGACACCTCGGCGTCCCTGCACTCGCTCCGGTGCATCTCGTAATCGTGGTGGCCGCTCGACTGTAGCATCCGTAGCTGGCCTCGCCCCGGTCCTATATTCGTAGCTAGCGAAGGCACTGCCGCACTGTCGTAGTTTGCAGGCCCTGTTGTTCTTCGTTCCATCTGTACAAAATAGTAGTATTTGTGGAAGTAAAAGAGATAATAAAGAGAAACAGTTTGAAATGCTTAAAAAAAA]
[+] EMBL AK071867 [GCCCCCCCACAAGAATTGGATAAGCTCGATTGACGATTGCCATGGTTGATCTGATCCACGAGACGGACGACGCGATGGCCGAGGCGGAGCTGCTGCTGGAGCGCAGCCGGGCGATCACCCTGAACGGCCGAGACAAGCGAGGCCGCGCCCTCGTCAGGATCGTCGGCAAGTACTTCCCCGCGCGCGCGCTGGGCGGGCGGGCGGAGGCGGCGTTGAGGGGGTACGTGCGGAGGCGCGTGCT CCCGGAGATCGGGGAGCGGGAGTTCGTGGTCGTGTACGTCCACTCCCTCGTCGACCGCGGCGACAACTTCCCCGGCGTCGCAGCGATCCGCGCGGCGTACGAGGCGCTGCCTGCCGCGGCCAAGGAGCGGCTGCGCGCGGTGTACTTCGTGCACCCGGGATTCCAGGCCCGCCTCTTCTTCGCCACCTTGGGGCGATTCCTCTTCAGCTCCGGGCTGTACGAGAAGCTGAGGTACATGAGCAGGCTCGAGTACCTGTGGGAGCACGTGAGCAAGGGGGAGATGGAGGTCCCGGAATGCGCGCGCCGGCATGACGAGGAGCTCGAGCGCCGCCCGCTCATGGACTACGGCATCGAGGCTACTGACCGCCGGTGCATGTTCGACGCCGCGTCCATGGACACCTCGGCGTCCCTGCACTCGCTCCGGTGCATCTCGTAATCGTGGTGGCCGCTCGACTGTAGCATCCGTAGCTGGCCTCGCCCCGGTCCTATATTCGTAGCTAGCGAAGGCACTGCCGCACTGTCGTAGTTTGCAGGCCCTGTTGTTCTTCGTTCCATCTGTACAAAATAGTAGTATTTGTGGAAGTAAAAGAGATAATAAAGAG ]
[+] EMBL CF324733 [ AAGAATTGGATAAGCTCGATTGACGATTGCCATGGTTGATCTGATCCACGAGACGGACGACGCGATGGCCGAGGCGGAGCTGCTGCTGGAGCGCAGCCGGGCGATCACCCTGAACGGCCGAGACAAGCGAGGCCGCGCCCTCGTCAGGATCGTCGGCAAGTACTTCCCCGCGCGCGCGCTGGGCGGGCGGGCGGAGGCGGCGTTGAGGGGGTACGTGCGGAGGCGCGTGCT CCCGGAGATCGGGGAGCGGGAGTTCGTGGTCGTGTACGTCCACTCCCTCGTCGACCGCGGCGACAACTTCCCCGGCGTCGCAGCGATCCGCGCGGCGTACGAGGCGCTGCCTGCCGCGGCCAAGGAGCGGCTGCGCGCGGTGTACTTCGTGCACCCGGGATTCCAGGCCCGCCTCTTCTTCGCCACCTTGGGGCGATTCC ]
[+] EMBL BE229659 [ cgaGGTTGATCTGATCCACGAGACGGACGACNCGATGGCCGAAGCGGAGCTGCTGCTGGAGCGCA CCGGGCGATCACCCTGAACGGCCGANACAAGCGANGCCGCGCCCTCGTCAGGATCGTCGGCAAGTNCTTCCCCGCGCGCGCNCTGGGCGGGCGGGCGGA ]
[+] EMBL BI804863 [ CGCGTGCTCCCCGGA ATC GGGACCGGGATTTCGT GTCGTGTACGTCCACTCCCTCGTCGACC C GCGACAACTTCCCCGGCGTCGCAGCGATCCGCGCGGCGTACGAGGC CTGCCTGCCGC GCCAAGGA C GCTGCGC CGGTGTACTTCGTGCACCCGGGATTCCA GCCCGCCTCTTCTTCGCCACCTT GGGCGATTCCTCTTCAGCTCCGGGCTGTACGAGAAGCTGAGGTACATGAGCAGGCTCGAGTACCTGTGGGAGCACGTGAGCAAGGGGGAGATGGAGGTCCCGGAATGCGCGCGCCGGCATGACGAGGAGCTCGAGCGCCGCCCGCTCATGGACTACGGCATCGAGGCTACTGACCGCCGGTGCATGTTCGACGCCGCGTCCATGGACACCTCGGCGTCCCTGCACTCGCTCCGGTGCATCTCGTAATCGTGGTGGCCGCTCGACTGTAGCATCCGTAGCTGGCCTCGCCCCGGTCCTATATTCGTAGCTAGCGAAGGCACTGCCGCACTGTCGTAGTTTGCAGGCCCTGTTGTTCTTCGTTCCATCTGTACAAAATAGTAGTATTTGTGGAAGTAAAAGAGATAATAAAGAGAAACAGTTTGAAATGCTTAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7766#0 ------------------------------TGACGATTGCCATGGTTGATCTGATCCACG 30
consensus_7766#1 GCCCCCCCACAAGAATTGGATAAGCTCGATTGACGATTGCCATGGTTGATCTGATCCACG 60
******************************
consensus_7766#0 AGACGGACGACGCGATGGCCGAGGCGGAGCTGCTGCTGGAGCGCAGCCGGGCGATCACCC 90
consensus_7766#1 AGACGGACGACGCGATGGCCGAGGCGGAGCTGCTGCTGGAGCGCAGCCGGGCGATCACCC 120
************************************************************
consensus_7766#0 TGAACGGCCGAGACAAGCGAGGCCGCGCCCTCGTCAGGATCGTCGGCAAGTACTTCCCCG 150
consensus_7766#1 TGAACGGCCGAGACAAGCGAGGCCGCGCCCTCGTCAGGATCGTCGGCAAGTACTTCCCCG 180
************************************************************
consensus_7766#0 GTAAGCTGAGCTCGGCCTCGCTCGTCAGATCCCCGCAATTCCGATGCTTTTGCCGGCGGA 210
consensus_7766#1 ------------------------------------------------------------
consensus_7766#0 AAAGTGACCCCGTTTCCTTTGTCGCGGCAGCGCGCGCGCTGGGCGGGCGGGCGGAGGCGG 270
consensus_7766#1 ------------------------------CGCGCGCGCTGGGCGGGCGGGCGGAGGCGG 210
******************************
consensus_7766#0 CGTTGAGGGGGTACGTGCGGAGGCGCGTGCTCCCGGAGATCGGGGAGCGGGAGTTCGTGG 330
consensus_7766#1 CGTTGAGGGGGTACGTGCGGAGGCGCGTGCTCCCGGAGATCGGGGAGCGGGAGTTCGTGG 270
************************************************************
consensus_7766#0 TCGCGTACGTCCACTCCCTCGTCGACCGCGGCGACAACTTCCCCGGCGTCGCAGCGATCC 390
consensus_7766#1 TCGTGTACGTCCACTCCCTCGTCGACCGCGGCGACAACTTCCCCGGCGTCGCAGCGATCC 330
*** ********************************************************
consensus_7766#0 GCGCGGCGTACGAGGCGCTGCCTGCCGCGGCCAAGGAGCGGCTGCGCGCGGTGTACTTCG 450
consensus_7766#1 GCGCGGCGTACGAGGCGCTGCCTGCCGCGGCCAAGGAGCGGCTGCGCGCGGTGTACTTCG 390
************************************************************
consensus_7766#0 TGCACCCGGGATTCCAGGCCCGCCTCTTCTTCGCCACCTTGGGGCGATTCCTCTTCAGCT 510
consensus_7766#1 TGCACCCGGGATTCCAGGCCCGCCTCTTCTTCGCCACCTTGGGGCGATTCCTCTTCAGCT 450
************************************************************
consensus_7766#0 CCGGGTATGTACATACAACGAATCACTCCGTGTGTGCTGCACTACGATTCGTGGGTGAGG 570
consensus_7766#1 CCGGG------------------------------------------------------- 455
*****
consensus_7766#0 CGCTGGTGTTTACCGTGGTTTCCTTGGAATTTTGGATCTTGCAGGCTGTACGAGAAGCTG 630
consensus_7766#1 ---------------------------------------------CTGTACGAGAAGCTG 470
***************
consensus_7766#0 AGGTACATGAGCAGGCTCGAGTACCTGTGGGAGCACGTGAGCAAGGGGGAGATGGAGGTC 690
consensus_7766#1 AGGTACATGAGCAGGCTCGAGTACCTGTGGGAGCACGTGAGCAAGGGGGAGATGGAGGTC 530
************************************************************
consensus_7766#0 CCGGAATGCGCGCGCCGGCATGACGAGGAGCTCGAGCGCCGCCCGCTCATGGACTACGGC 750
consensus_7766#1 CCGGAATGCGCGCGCCGGCATGACGAGGAGCTCGAGCGCCGCCCGCTCATGGACTACGGC 590
************************************************************
consensus_7766#0 ATCGAGGCTACTGACCGCCGGTGCATGTTCGACGCCGCGTCCATGGACACCTCGGCGTCC 810
consensus_7766#1 ATCGAGGCTACTGACCGCCGGTGCATGTTCGACGCCGCGTCCATGGACACCTCGGCGTCC 650
************************************************************
consensus_7766#0 CTGCACTCGCTCCGGTGCATCTCGTAATCGTGGTGGCCGCTCGACTGTAGCATCCGTAGC 870
consensus_7766#1 CTGCACTCGCTCCGGTGCATCTCGTAATCGTGGTGGCCGCTCGACTGTAGCATCCGTAGC 710
************************************************************
consensus_7766#0 TGGCCTCGCCCCGGTCCTATATTCGTAGCTAGCGAAGGCACTGCCGCACTGTCGTAGTTT 930
consensus_7766#1 TGGCCTCGCCCCGGTCCTATATTCGTAGCTAGCGAAGGCACTGCCGCACTGTCGTAGTTT 770
************************************************************
consensus_7766#0 GCAGGCCCTGTTGTTCTTCGTTCCATCTGTACAAAATAGTAGTATTTGTGGAAGTAAAAG 990
consensus_7766#1 GCAGGCCCTGTTGTTCTTCGTTCCATCTGTACAAAATAGTAGTATTTGTGGAAGTAAAAG 830
************************************************************
consensus_7766#0 AGATAATAAAGAGAAACAG-------------------- 1009
consensus_7766#1 AGATAATAAAGAGAAACAGTTTGAAATGCTTAAAAAAAA 869
*******************
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||