These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7768#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [CTGCTGTTCGACCANTCGGCGTCCGTCCTTCGTTCGCCGCCGTGCCGCCCAACGACGAGCGGCACTGGCGCTTNCCGTGGCGAGGCAGCCGGTGACGGTGTACATCGACGCGAGCGCGCAGGAGTTCCAGTTCTACAAGGGCGGCGTGTACAAGGGCCCCTGCAACCCCGGGAGTGTGAACCACGCCGTCACCATCGTCGGCTACTGCGAGAACTTCGGCGGGGAAAAGTACTGGATCGCCAAGAACTCGTGGAGCAACGACTGGGGCGAGCAGGGCTACGTGTACCTGGCCAAGGACGTGTGGTGGCCCCAGGGCACCTGTGGCCTCGCCACCTCCCCATTCTACCCCACGGTTTAATCCGCGTTCGTGTGCCCGGCTTTGCTTAAGTATACAGTGCTAGTGTCTAATCTGTCCGTGGATGAAGGCTCGGACGGCTGAGATTGATGGACTGTTGATAGTTTCTACCACCTGTTGTGAGAGTGTAATCATGAAAGACAATAAATCAATAATACAAATTCATTCCGCTTTGATTAAAAAAAAAAAAAAAAA] [+] EMBL AU032203 [CTGCTGTTCGACCANTCGGCGTCCGTCCTTCGTTCGCCGCCGTGCCGCCCAACGACGAGCGGCACTGGCGCTTNCCGTGGCGAGGCAGCCGGTGACGGTGTACATCGACGCGAGCGCGCAGGAGTTCCAGTTCTACAAGGGCGGCGTGTACAAGGGCCCCTGCAACCCCGGGAGTGTGAACCACGCCGTCACCATCGTCGGCTACTGCGAGAACTTCGGCGGGGAAAAGTACTGGATCGCCAAGAACTCGTGGAGCAACGACTGGGGCGAGCAGGGCTACGTGTACCTGGCCAAGGACGTGTGGTGGCCCCAGGGCACCTGTGGCCTCGCCACCTCCCCATTCTACCCCACGGTTTAATCCGCGTTCGTGTGCCCGGCTTTGCTTAAGTATACAGTGCTAGTGTCTAATCTGTCCGTGGATGAAGGCTCGGACGGCTGAGATTGATGGACTGTTGATAGTTTCTACCACCTGTTGTGAGAGTGTAATCATGAAAGACAATAAATCAATAATACAAATTCATTCCGCTTTGATTAAAAAAAAAAAAAAAAA] consensusID : consensus_7768#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 507 fasta sequence [CGTTCCGCCTAACGNCGACGGCAGTTGGNGCTTGCCGTTACGAGNCAGCCGGTGACGGTGTACATCGACGCG-AGAGCGCAGGAGTTCCAG-TTCTACAAGGGCGGCGTGTACAAGGGCCCCTGCAACCCCGGGAGTGTGAACCACNC-CGTCACCATCGTCGGCTA-TNCGAGAACTTCGGCGGGGAAAAGTAC-TGGAT-CGCCAAGAACTCGTGGAGCAACGACT-GGGGTGAGCAGGGCTACGTGTACCTGGCCAAGGACGTGTGGTGGCCGCAGGGTACCTGTGGCCTCGCCACCTCCCCATTCTACCCCACGGTTTAATCCGCGTTCGTGTGCCCGGCTGGCTTTTCTTAAGTATATACAGTGCTAGTGTCTATCTGTCCATGGATGAAGACACGGACGGCTGAGATTGATGGATAGATGCATCCGTTGCTAGTTTTCTACCAGTTGTGAGAATGCAATCATGCAAGATAATAAACTAATAATATTTTCTCCGATTTTTTNAAAAAAA] [+] EMBL AU031835 [CGTTCCGCCTAACGNCGACGGCAGTTGGNGCTTGCCGTTACGAGNCAGCCGGTGACGGTGTACATCGACGCG AGAGCGCAGGAGTTCCAG TTCTACAAGGGCGGCGTGTACAAGGGCCCCTGCAACCCCGGGAGTGTGAACCACNC CGTCACCATCGTCGGCTA TNCGAGAACTTCNGCGGGGAAAAGTAC TGGAT CGCCAAGAACTCGTGGAGCAACGACT GGGGTGAGCAGGGCTACGTGTNCCTGGCCAAGGACGTGTGGTGGCCGCAGGGTACCTGTGGCCTCGCCACCTCCCCATTCTNCCCCACGGTTTAATCCGCGTTCGTGTGCCCGGCTGGCTTTTCTTAAGTATATACAGTGCTAGTGTCTATCTGTCCATGGATGAAGACNCGGACGGCTGAGATTGATGGATAGATGCATCCGTTGCTNGTTTTCTACCAGTTGTGAGAATGCAATCATGCAAGATAATAAACTNATNATATTTTCTCCGATTTTTTNAAAAAAA] [+] EMBL AU031813 [ GTACATCGACGCGAAGAGCGNAGGAGTTCCAGTTTCTACAAGGGCGGCGTGTACAAGGGCCCCTGCAACCCCGGGAGTNTGAACCACGCNCGTCACCATCGTCGGCTACTGCGAGAACTTCGGCGGGGAAAAGTAC TGGAT CGCCAAGAACTCGTGGAGCAACGACT GGGGTGAGCAGGGCTACGTGTACCTGGCCAAGGACGTGTGGTGGCCGCAGGGTACCTGTGGCCTCGCCACCTCCCCATTCTACCCCACGGTTTAATCCGCGTTCGTGTGCCCGGCTGGCTTTTCTTAAGTATATACAGTGCTAGTGTCTATCTGTCCATGGATGAAGACACGGACGGCTGAGATTGATGGATAGATGCATCCGTTGCTAGTTTTCTACCAGTTGTGAGAATGCAATCATGCAAGATAATAAACTAATAATATTTTCTCCGATTTTATCAAAAAAA] [+] EMBL AU095479 [ GAACTTCGGCGGGGAAAAGTACTTGGATCCGCCAAGAACTCGTGGAGCAACGACTNGGGGTGAGCAGGGCTACGTGTACCTGGCCAAGGACGTGTGGTGGCCGCAGGGTACCTGTGGCCTCGCCACCTCCCCATTCTACCCCACGGTTTAATCCGCGTTCGTGTGCCCGGCTGGCTTTTCTTAAGTATATACAGTGCTAGTGTCTATCTGTCCATGGATGAAGACACGGACGGCTGAGATTGATGGATAGATGCATCCGTTGCTAGTTTTCTACCAGTTGTGAGAATGCAATCATGCAAGATAATAAACTAATAATATTTTCTCCaaaa ] consensusID : consensus_7768#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [GCGCTCAACCTGGTGGCGTCCCGCGGCGGCATCACGTCGGAGGAGAAGTACCCGTACACGGGCGTCCAGGGCAGCTGCGACGTGGGCAAGCTGCTGTTCGACCACTCGGCGTCCGTCTCCGGCTTCGCGCCGTGCCGCCCAACGACGAGCGGCAGTGGCGCTTGCCGTGGCGAGGCAGCCGGTGACGGTGTACATCGACGCGAGCGCGCAGGAGTTCCAGTTCTACAAGGGCGGCGTGTACAAGGGCCCCTGCAACCCCGGGAGTGTGAACCACGTCGTCAACATCGTCGGCTACTNCGAGAACTTTCGGCGGGGAAAAGTACTTGGATCGCCAAGAACTCGTGGAGCAACGACTTNGGGCGAGAAGGGTTACGTGTANCTGGCCAAGGACGTTTTGTNGGCCCAAGGNACTTTGGCCTNGGCAACTTCCATTTTACC] [+] EMBL AU083497 [GCGCTCAACCTGGTGGCGTCCCGCGGCGGCATCACGTCGGAGGAGAAGTACCCGTACACGGGCGTCCAGGGCAGCTGCGACGTGGGCAAGCTGCTGTTCGACCACTCGGCGTCCGTCTCCGGCTTCGCGCCGTGCCGCCCAACGACGAGCGGCAGTGGCGCTTGCCGTGGCGAGGCAGCCGGTGACGGTGTACATCGACGCGAGCGCGCAGGAGTTCCAGTTCTACAAGGGCGGCGTGTACAAGGGCCCCTGCAACCCCGGGAGTGTGAACCACGTCGTCAACATCGTCGGCTACTNCGAGAACTTTCGGCGGGGAAAAGTACTTGGATCGCCAAGAACTCGTGGAGCAACGACTTNGGGCGAGAAGGGTTACGTGTANCTGGCCAAGGACGTTTTGTNGGCCCAAGGNACTTTGGCCTNGGCAACTTCCATTTTACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7768#0 ------------------------------------------------------------ consensus_7768#1 ------------------------------------------------------------ consensus_7768#2 GCGCTCAACCTGGTGGCGTCCCGCGGCGGCATCACGTCGGAGGAGAAGTACCCGTACACG 60 consensus_7768#0 ------------------------------CTGCTGTTCGACCANTCGGCGTCCGTCCTT 30 consensus_7768#1 ------------------------------------------------------------ consensus_7768#2 GGCGTCCAGGGCAGCTGCGACGTGGGCAAGCTGCTGTTCGACCACTCGGCGTCCGTCTCC 120 consensus_7768#0 CGTTCGCCGCCGTGCCGCCCAACGACGAGCGGCACTGGCGCTTNCCGTGGCGAGGCAGCC 90 consensus_7768#1 ----------CGTTCCGCCTAACGNCGACGGCAGTTGGNGCTTGCCGTTACGAGNCAGCC 50 consensus_7768#2 GGCTTCGCGCCGTGCCGCCCAACGACGAGCGGCAGTGGCGCTTGCCGTGGCGAGGCAGCC 180 *** ***** **** *** * *** **** **** **** ***** consensus_7768#0 GGTGACGGTGTACATCGACGCGAGCGCGCAGGAGTTCCAGTTCTACAAGGGCGGCGTGTA 150 consensus_7768#1 GGTGACGGTGTACATCGACGCGAGAGCGCAGGAGTTCCAGTTCTACAAGGGCGGCGTGTA 110 consensus_7768#2 GGTGACGGTGTACATCGACGCGAGCGCGCAGGAGTTCCAGTTCTACAAGGGCGGCGTGTA 240 ************************ *********************************** consensus_7768#0 CAAGGGCCCCTGCAACCCCGGGAGTGTGAACCACGCCGTCACCATCGTCGGCTACTGCGA 210 consensus_7768#1 CAAGGGCCCCTGCAACCCCGGGAGTGTGAACCACNCCGTCACCATCGTCGGCTA-TNCGA 169 consensus_7768#2 CAAGGGCCCCTGCAACCCCGGGAGTGTGAACCACGTCGTCAACATCGTCGGCTACTNCGA 300 ********************************** ***** ************ * *** consensus_7768#0 GAACTT-CGGCGGGGAAAAGTACT-GGATCGCCAAGAACTCGTGGAGCAACGACT-GGGG 267 consensus_7768#1 GAACTT-CGGCGGGGAAAAGTACT-GGATCGCCAAGAACTCGTGGAGCAACGACT-GGGG 226 consensus_7768#2 GAACTTTCGGCGGGGAAAAGTACTTGGATCGCCAAGAACTCGTGGAGCAACGACTTNGGG 360 ****** ***************** ****************************** *** consensus_7768#0 CGAGCAGGGCTACGTGTACCTGGCCAAGGACGTGTGGTGGCCCCAGGGCACCTGTGGCCT 327 consensus_7768#1 TGAGCAGGGCTACGTGTACCTGGCCAAGGACGTGTGGTGGCCGCAGGGTACCTGTGGCCT 286 consensus_7768#2 CGAGAAGGGTTACGTGTANCTGGCCAAGGACGTTTTGTNGGCCCAAGGNACTT-TGGCCT 419 *** **** ******** ************** * ** * * ** ** ** * ****** consensus_7768#0 CGCCACCTCCCCATTCTACCCCACGGTTTAATCCGCGTTCGTGTGCCCGGCT----TTGC 383 consensus_7768#1 CGCCACCTCCCCATTCTACCCCACGGTTTAATCCGCGTTCGTGTGCCCGGCTGGCTTTTC 346 consensus_7768#2 NGGCAACTTCC-ATTTTACC---------------------------------------- 438 * ** ** ** *** **** consensus_7768#0 TTAAGTATA--CAGTGCTAGTGTCTAATCTGTCCGTGGATGAAGGCTCGGACGGCTGAGA 441 consensus_7768#1 TTAAGTATATACAGTGCTAGTGTCTA-TCTGTCCATGGATGAAGACACGGACGGCTGAGA 405 consensus_7768#2 ------------------------------------------------------------ consensus_7768#0 TTGATGGA---------CTGTTGATAGTTTCTACCACCTGTTGTGAGAGTGTAATCATGA 492 consensus_7768#1 TTGATGGATAGATGCATCCGTTGCTAGTTTT--CTACCAGTTGTGAGAATGCAATCATGC 463 consensus_7768#2 ------------------------------------------------------------ consensus_7768#0 AAGACAATAAATCAATAATACAAATTCATTCCGCTTTGATTAAAAAAAAAAAAAAAAA 550 consensus_7768#1 AAGATAATAAACTAATAAT----ATTTTCTCCGATTTTTTNAAAAAAA---------- 507 consensus_7768#2 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||