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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7768#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence
[CTGCTGTTCGACCANTCGGCGTCCGTCCTTCGTTCGCCGCCGTGCCGCCCAACGACGAGCGGCACTGGCGCTTNCCGTGGCGAGGCAGCCGGTGACGGTGTACATCGACGCGAGCGCGCAGGAGTTCCAGTTCTACAAGGGCGGCGTGTACAAGGGCCCCTGCAACCCCGGGAGTGTGAACCACGCCGTCACCATCGTCGGCTACTGCGAGAACTTCGGCGGGGAAAAGTACTGGATCGCCAAGAACTCGTGGAGCAACGACTGGGGCGAGCAGGGCTACGTGTACCTGGCCAAGGACGTGTGGTGGCCCCAGGGCACCTGTGGCCTCGCCACCTCCCCATTCTACCCCACGGTTTAATCCGCGTTCGTGTGCCCGGCTTTGCTTAAGTATACAGTGCTAGTGTCTAATCTGTCCGTGGATGAAGGCTCGGACGGCTGAGATTGATGGACTGTTGATAGTTTCTACCACCTGTTGTGAGAGTGTAATCATGAAAGACAATAAATCAATAATACAAATTCATTCCGCTTTGATTAAAAAAAAAAAAAAAAA]
[+] EMBL AU032203 [CTGCTGTTCGACCANTCGGCGTCCGTCCTTCGTTCGCCGCCGTGCCGCCCAACGACGAGCGGCACTGGCGCTTNCCGTGGCGAGGCAGCCGGTGACGGTGTACATCGACGCGAGCGCGCAGGAGTTCCAGTTCTACAAGGGCGGCGTGTACAAGGGCCCCTGCAACCCCGGGAGTGTGAACCACGCCGTCACCATCGTCGGCTACTGCGAGAACTTCGGCGGGGAAAAGTACTGGATCGCCAAGAACTCGTGGAGCAACGACTGGGGCGAGCAGGGCTACGTGTACCTGGCCAAGGACGTGTGGTGGCCCCAGGGCACCTGTGGCCTCGCCACCTCCCCATTCTACCCCACGGTTTAATCCGCGTTCGTGTGCCCGGCTTTGCTTAAGTATACAGTGCTAGTGTCTAATCTGTCCGTGGATGAAGGCTCGGACGGCTGAGATTGATGGACTGTTGATAGTTTCTACCACCTGTTGTGAGAGTGTAATCATGAAAGACAATAAATCAATAATACAAATTCATTCCGCTTTGATTAAAAAAAAAAAAAAAAA]
consensusID : consensus_7768#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 507 fasta sequence
[CGTTCCGCCTAACGNCGACGGCAGTTGGNGCTTGCCGTTACGAGNCAGCCGGTGACGGTGTACATCGACGCG-AGAGCGCAGGAGTTCCAG-TTCTACAAGGGCGGCGTGTACAAGGGCCCCTGCAACCCCGGGAGTGTGAACCACNC-CGTCACCATCGTCGGCTA-TNCGAGAACTTCGGCGGGGAAAAGTAC-TGGAT-CGCCAAGAACTCGTGGAGCAACGACT-GGGGTGAGCAGGGCTACGTGTACCTGGCCAAGGACGTGTGGTGGCCGCAGGGTACCTGTGGCCTCGCCACCTCCCCATTCTACCCCACGGTTTAATCCGCGTTCGTGTGCCCGGCTGGCTTTTCTTAAGTATATACAGTGCTAGTGTCTATCTGTCCATGGATGAAGACACGGACGGCTGAGATTGATGGATAGATGCATCCGTTGCTAGTTTTCTACCAGTTGTGAGAATGCAATCATGCAAGATAATAAACTAATAATATTTTCTCCGATTTTTTNAAAAAAA]
[+] EMBL AU031835 [CGTTCCGCCTAACGNCGACGGCAGTTGGNGCTTGCCGTTACGAGNCAGCCGGTGACGGTGTACATCGACGCG AGAGCGCAGGAGTTCCAG TTCTACAAGGGCGGCGTGTACAAGGGCCCCTGCAACCCCGGGAGTGTGAACCACNC CGTCACCATCGTCGGCTA TNCGAGAACTTCNGCGGGGAAAAGTAC TGGAT CGCCAAGAACTCGTGGAGCAACGACT GGGGTGAGCAGGGCTACGTGTNCCTGGCCAAGGACGTGTGGTGGCCGCAGGGTACCTGTGGCCTCGCCACCTCCCCATTCTNCCCCACGGTTTAATCCGCGTTCGTGTGCCCGGCTGGCTTTTCTTAAGTATATACAGTGCTAGTGTCTATCTGTCCATGGATGAAGACNCGGACGGCTGAGATTGATGGATAGATGCATCCGTTGCTNGTTTTCTACCAGTTGTGAGAATGCAATCATGCAAGATAATAAACTNATNATATTTTCTCCGATTTTTTNAAAAAAA]
[+] EMBL AU031813 [ GTACATCGACGCGAAGAGCGNAGGAGTTCCAGTTTCTACAAGGGCGGCGTGTACAAGGGCCCCTGCAACCCCGGGAGTNTGAACCACGCNCGTCACCATCGTCGGCTACTGCGAGAACTTCGGCGGGGAAAAGTAC TGGAT CGCCAAGAACTCGTGGAGCAACGACT GGGGTGAGCAGGGCTACGTGTACCTGGCCAAGGACGTGTGGTGGCCGCAGGGTACCTGTGGCCTCGCCACCTCCCCATTCTACCCCACGGTTTAATCCGCGTTCGTGTGCCCGGCTGGCTTTTCTTAAGTATATACAGTGCTAGTGTCTATCTGTCCATGGATGAAGACACGGACGGCTGAGATTGATGGATAGATGCATCCGTTGCTAGTTTTCTACCAGTTGTGAGAATGCAATCATGCAAGATAATAAACTAATAATATTTTCTCCGATTTTATCAAAAAAA]
[+] EMBL AU095479 [ GAACTTCGGCGGGGAAAAGTACTTGGATCCGCCAAGAACTCGTGGAGCAACGACTNGGGGTGAGCAGGGCTACGTGTACCTGGCCAAGGACGTGTGGTGGCCGCAGGGTACCTGTGGCCTCGCCACCTCCCCATTCTACCCCACGGTTTAATCCGCGTTCGTGTGCCCGGCTGGCTTTTCTTAAGTATATACAGTGCTAGTGTCTATCTGTCCATGGATGAAGACACGGACGGCTGAGATTGATGGATAGATGCATCCGTTGCTAGTTTTCTACCAGTTGTGAGAATGCAATCATGCAAGATAATAAACTAATAATATTTTCTCCaaaa ]
consensusID : consensus_7768#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence
[GCGCTCAACCTGGTGGCGTCCCGCGGCGGCATCACGTCGGAGGAGAAGTACCCGTACACGGGCGTCCAGGGCAGCTGCGACGTGGGCAAGCTGCTGTTCGACCACTCGGCGTCCGTCTCCGGCTTCGCGCCGTGCCGCCCAACGACGAGCGGCAGTGGCGCTTGCCGTGGCGAGGCAGCCGGTGACGGTGTACATCGACGCGAGCGCGCAGGAGTTCCAGTTCTACAAGGGCGGCGTGTACAAGGGCCCCTGCAACCCCGGGAGTGTGAACCACGTCGTCAACATCGTCGGCTACTNCGAGAACTTTCGGCGGGGAAAAGTACTTGGATCGCCAAGAACTCGTGGAGCAACGACTTNGGGCGAGAAGGGTTACGTGTANCTGGCCAAGGACGTTTTGTNGGCCCAAGGNACTTTGGCCTNGGCAACTTCCATTTTACC]
[+] EMBL AU083497 [GCGCTCAACCTGGTGGCGTCCCGCGGCGGCATCACGTCGGAGGAGAAGTACCCGTACACGGGCGTCCAGGGCAGCTGCGACGTGGGCAAGCTGCTGTTCGACCACTCGGCGTCCGTCTCCGGCTTCGCGCCGTGCCGCCCAACGACGAGCGGCAGTGGCGCTTGCCGTGGCGAGGCAGCCGGTGACGGTGTACATCGACGCGAGCGCGCAGGAGTTCCAGTTCTACAAGGGCGGCGTGTACAAGGGCCCCTGCAACCCCGGGAGTGTGAACCACGTCGTCAACATCGTCGGCTACTNCGAGAACTTTCGGCGGGGAAAAGTACTTGGATCGCCAAGAACTCGTGGAGCAACGACTTNGGGCGAGAAGGGTTACGTGTANCTGGCCAAGGACGTTTTGTNGGCCCAAGGNACTTTGGCCTNGGCAACTTCCATTTTACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7768#0 ------------------------------------------------------------
consensus_7768#1 ------------------------------------------------------------
consensus_7768#2 GCGCTCAACCTGGTGGCGTCCCGCGGCGGCATCACGTCGGAGGAGAAGTACCCGTACACG 60
consensus_7768#0 ------------------------------CTGCTGTTCGACCANTCGGCGTCCGTCCTT 30
consensus_7768#1 ------------------------------------------------------------
consensus_7768#2 GGCGTCCAGGGCAGCTGCGACGTGGGCAAGCTGCTGTTCGACCACTCGGCGTCCGTCTCC 120
consensus_7768#0 CGTTCGCCGCCGTGCCGCCCAACGACGAGCGGCACTGGCGCTTNCCGTGGCGAGGCAGCC 90
consensus_7768#1 ----------CGTTCCGCCTAACGNCGACGGCAGTTGGNGCTTGCCGTTACGAGNCAGCC 50
consensus_7768#2 GGCTTCGCGCCGTGCCGCCCAACGACGAGCGGCAGTGGCGCTTGCCGTGGCGAGGCAGCC 180
*** ***** **** *** * *** **** **** **** *****
consensus_7768#0 GGTGACGGTGTACATCGACGCGAGCGCGCAGGAGTTCCAGTTCTACAAGGGCGGCGTGTA 150
consensus_7768#1 GGTGACGGTGTACATCGACGCGAGAGCGCAGGAGTTCCAGTTCTACAAGGGCGGCGTGTA 110
consensus_7768#2 GGTGACGGTGTACATCGACGCGAGCGCGCAGGAGTTCCAGTTCTACAAGGGCGGCGTGTA 240
************************ ***********************************
consensus_7768#0 CAAGGGCCCCTGCAACCCCGGGAGTGTGAACCACGCCGTCACCATCGTCGGCTACTGCGA 210
consensus_7768#1 CAAGGGCCCCTGCAACCCCGGGAGTGTGAACCACNCCGTCACCATCGTCGGCTA-TNCGA 169
consensus_7768#2 CAAGGGCCCCTGCAACCCCGGGAGTGTGAACCACGTCGTCAACATCGTCGGCTACTNCGA 300
********************************** ***** ************ * ***
consensus_7768#0 GAACTT-CGGCGGGGAAAAGTACT-GGATCGCCAAGAACTCGTGGAGCAACGACT-GGGG 267
consensus_7768#1 GAACTT-CGGCGGGGAAAAGTACT-GGATCGCCAAGAACTCGTGGAGCAACGACT-GGGG 226
consensus_7768#2 GAACTTTCGGCGGGGAAAAGTACTTGGATCGCCAAGAACTCGTGGAGCAACGACTTNGGG 360
****** ***************** ****************************** ***
consensus_7768#0 CGAGCAGGGCTACGTGTACCTGGCCAAGGACGTGTGGTGGCCCCAGGGCACCTGTGGCCT 327
consensus_7768#1 TGAGCAGGGCTACGTGTACCTGGCCAAGGACGTGTGGTGGCCGCAGGGTACCTGTGGCCT 286
consensus_7768#2 CGAGAAGGGTTACGTGTANCTGGCCAAGGACGTTTTGTNGGCCCAAGGNACTT-TGGCCT 419
*** **** ******** ************** * ** * * ** ** ** * ******
consensus_7768#0 CGCCACCTCCCCATTCTACCCCACGGTTTAATCCGCGTTCGTGTGCCCGGCT----TTGC 383
consensus_7768#1 CGCCACCTCCCCATTCTACCCCACGGTTTAATCCGCGTTCGTGTGCCCGGCTGGCTTTTC 346
consensus_7768#2 NGGCAACTTCC-ATTTTACC---------------------------------------- 438
* ** ** ** *** ****
consensus_7768#0 TTAAGTATA--CAGTGCTAGTGTCTAATCTGTCCGTGGATGAAGGCTCGGACGGCTGAGA 441
consensus_7768#1 TTAAGTATATACAGTGCTAGTGTCTA-TCTGTCCATGGATGAAGACACGGACGGCTGAGA 405
consensus_7768#2 ------------------------------------------------------------
consensus_7768#0 TTGATGGA---------CTGTTGATAGTTTCTACCACCTGTTGTGAGAGTGTAATCATGA 492
consensus_7768#1 TTGATGGATAGATGCATCCGTTGCTAGTTTT--CTACCAGTTGTGAGAATGCAATCATGC 463
consensus_7768#2 ------------------------------------------------------------
consensus_7768#0 AAGACAATAAATCAATAATACAAATTCATTCCGCTTTGATTAAAAAAAAAAAAAAAAA 550
consensus_7768#1 AAGATAATAAACTAATAAT----ATTTTCTCCGATTTTTTNAAAAAAA---------- 507
consensus_7768#2 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||