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Oryza sativa
cluster # 7772 cluster # 7772       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7772#0 length = 1513 sequences # 3  
consensus_7772#1 length = 522 sequences # 2  

consensusID : consensus_7772#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1513
fasta sequence
                              [TGGACACCGCCGCGGCGGCGGAGAGCGCAAACCCCCGCCACCCCCCTCGCCGCCCGCCGTAAAACCCTAAAACCATGGCCGCCGCGGCGGAGGCCGTCCTCTTCCTCCTCCACCACCACCTCGCCTTCTTCGGGCTACGCATCTCGCCCTCCGTCTCCGTCCCCTCGCCCCGCCGCCGCTCCGCCGGAGAGGTGGCGCTGCTCGCCGTCGTCGTCGTCGCCGCGCTCCTCACCGCCACCACCCATGCCGCGTCCGCAACCATCGAGTCGCGCCCCGCCGACGCCCTGCGGTCGGAGGTCGACGAGCTCAGGCTCAGGGTTCTGCATTTGGAATCTTTGTTGGAGGAAAACACAAAAACTTTGAAGAGTAAAGCAAACAATTTGGAAGAGAACAGCAATCTTATTGGAACTATGGAACATGATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACCCAGAAAGCAATGTGAAAGCTTTGGAAGATGAGGTGCAGCTCCTCTGGAGAGTGGTCAGAAAGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCTGAGAAAAGGGTTGAATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAACAATGGATCCAAATTCGGCAACTTGAACAGGCATTTGTGTTGACGAAGATGATGACATCAAAAGTTCATCAAAGAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTAGTCCTTAAGTATTTCAGGAATCTTCATGGCACTTTTCTTATGGGGGTATCATACACAAAGTCCTGCTTTTCTCATACATATAAACATGGCAGGAGTTTCATACAAGCAATGAACAGACCCTACCATGAGGTATCACGGTTCTGTAAGGCAATATGTGG-CCAGCATATT-CGCGATGTTGATAAG-CCTAATGTCTTCTTCTTGGGTGGATCCATCTCCCGATCATGTATTTCTGCACCTTATAAACAACTCAAGATTTTCATGTTATTGGCTCAAAATTTTCATCATAAGGTCCAGATATTTCTCCAGGATGCAATGAGATCCAATAGTTACAGTAGAGGTTTCGCAACTGAGA-TAATTACGTTCTGCTTGGCATATTTTGTTGTTATATCTCCAATGTGGATTCTGTGGTTCCTCTATTCAACGCGATTTGGCTCAAAGAAATGACCAGTTG-CCATAAAACAAGAGTTGCATATACTGTTTTCATGTTTTTACATTTTACAAGTATAGAAGAGTTGCATGAGATGGTGGAAAATGCGTATAATTATATCTTGTAATTTATATCGAGCACATTGTATCACATTCCCCATGGAACCTCCCCTTTGCGGGGTGGTGTATTTATACCCCTAGCTCGCTCGCATTCTTCAGGGACTTGGATGGATAAATTTGTCTACTGATTTAGGCAGTCCTAGGTCTTCAAAGAAGAAGCATTTTTTTTTGATCGTTCAAAAATGCATCTTCCTTAAAAA]

[+] EMBL AK102077             [TGGACACCGCCGCGGCGGCGGAGAGCGCAAACCCCCGCCACCCCCCTCGCCGCCCGCCGTAAAACCCTAAAACCATGGCCGCCGCGGCGGAGGCCGTCCTCTTCCTCCTCCACCACCACCTCGCCTTCTTCGGGCTACGCATCTCGCCCTCCGTCTCCGTCCCCTCGCCCCGCCGCCGCTCCGCCGGAGAGGTGGCGCTGCTCGCCGTCGTCGTCGTCGCCGCGCTCCTCACCGCCACCACCCATGCCGCGTCCGCAACCATCGAGTCGCGCCCCGCCGACGCCCTGCGGTCGGAGGTCGACGAGCTCAGGCTCAGGGTTCTGCATTTGGAATCTTTGTTGGAGGAAAACACAAAAACTTTGAAGAGTAAAGCAAACAATTTGGAAGAGAACAGCAATCTTATTGGAACTATGGAACATGATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACCCAGAAAGCAATGTGAAAGCTTTGGAAGATGAGGTGCAGCTCCTCTGGAGAGTGGTCAGAAAGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCTGAGAAAAGGGTTGAATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAACAATGGATCCAAATTCGGCAACTTGAACAGGCATTTGTGTTGACGAAGATGATGACATCAAAAGTTCATCAAAGAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTAGTCCTTAAGTATTTCAGGAATCTTCATGGCACTTTTCTTATGGGGGTATCATACACAAAGTCCTGCTTTTCTCATACATATAAACATGGCAGGAGTTTCATACAAGCAATGAACAGACCCTACCATGAGGTATCACGGTTCTGTAAGGCAATATGTGG CCAGCATATT CGCGATGTTGATAAG CCTAATGTCTTCTTCTTGGGTGGATCCATCTCCCGATCATGTATTTCTGCACCTTATAAACAACTCAAGATTTTCATGTTATTGGCTCAAAATTTTCATCATAAGGTCCAGATATTTCTCCAGGATGCAATGAGATCCAATAGTTACAGTAGAGGTTTCGCAACTGAGA TAATTACGTTCTGCTTGGCATATTTTGTTGTTATATCTCCAATGTGGATTCTGTGGTTCCTCTATTCAACGCGATTTGGCTCAAAGGAATGACCAGTTG CCATAAAACAAGAGTTGCATATACTGTTTTCATGTTTTTACATTTTACAAGTATAGAAGAGTTGCATGAGATGGTGGAAAATGCGTATAATTATATCTTGTAATTTATATCGAGCACATTGTATCACATTCCCCATGGAACCTCCCCTTTGCGGGGTGGTGTAT                                                                                                                                   ]
[+] EMBL C98634               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TATGTGGCCCAGCNTATTCCGCGATGTTGATAAGCCCTAATGTCTTCTTCTTGGGTGGATCCATCTCCCGATCATGTATTTCTGCACCTTATAAACAACTCAAGATTTTCATGTTATTGGCTCAAAATTTTCANCATAAGGTCCAGATATTTCTCCAGGATGCAATGAGATCCAATAGTTACAGTAGAGGTTTCGCAACTGAGA TAATTACGTTCTGCTTGGCATATTTTGTTGTTATATCTCCAATGTGGATTCTGTGGTTCCTCTATTCAACGCGATTTGGCTCAAAGAAATGACCAGTTG CCATAAAACAAGAGTTGCATATACTGTTTTCATGTTTTTACATTTTACAAGTATAGAAGAGTTGCATGAGATGGTGGAAAATGCGTATAATTATATCTTGTAATTTATATCGAGCACATTGTATCACATTCCCCATGGAACCTCCCCTTTGCGGGGTGGTGTATTTATACCCCTAGCTCGCTCGCATTCTTCAGGGACTTGGATGGATAAATTTGTCTACTGATTTAGGCAGTCCTAGGTCTTCAAAGAAGAAGCATTTTTTTTTGATCGTTCAAAAATGCATCTTCCTTAAAAA]
[+] EMBL C98603               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ACTCNNGATTTTCATGTTATTGGCTCAAAATTTTCATCATAAGGTCCAGATATTTCTCCAGGATGCAATGAGATCCAATAGTTACAGTAGAGGTTTCGCAACTGAGATTAATTACGTTCTGCTTGGCATATTTTGTTGTTATATCTCCAATGTGGATTCTGTGGTTCCTCTATTCAACGCGATTTGGCTCAAAGAAATGACCAGTTGCCCATAAAACAAGAGTTGCATATACTGTTTTCATGTTTTTACATTTTACAAGTATAGAAGAGTTGCATGAGATGGTGGAAAATGCGTATAATTATATCTTGTAATTTATATCGAGCACATTGTATCACATTCCCCATGGAACCTCCCCTTTGCGGGGTGGTGTATTTATACCCCTAGCTCGCTCGCATTCTTCAGGGACTTGGATGGATAAATTTGTCTACTGATTTAGGCAGTCCTAGGTCTTCAAAGAAGAAGCATTTTTTTTTGATCGTTCAAAAATGCATCTTCCTTAAAAA]


>consensus_7772#0 TGGACACCGCCGCGGCGGCGGAGAGCGCAAACCCCCGCCACCCCCCTCGCCGCCCGCCGT AAAACCCTAAAACCATGGCCGCCGCGGCGGAGGCCGTCCTCTTCCTCCTCCACCACCACC TCGCCTTCTTCGGGCTACGCATCTCGCCCTCCGTCTCCGTCCCCTCGCCCCGCCGCCGCT CCGCCGGAGAGGTGGCGCTGCTCGCCGTCGTCGTCGTCGCCGCGCTCCTCACCGCCACCA CCCATGCCGCGTCCGCAACCATCGAGTCGCGCCCCGCCGACGCCCTGCGGTCGGAGGTCG ACGAGCTCAGGCTCAGGGTTCTGCATTTGGAATCTTTGTTGGAGGAAAACACAAAAACTT TGAAGAGTAAAGCAAACAATTTGGAAGAGAACAGCAATCTTATTGGAACTATGGAACATG ATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACC CAGAAAGCAATGTGAAAGCTTTGGAAGATGAGGTGCAGCTCCTCTGGAGAGTGGTCAGAA AGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCTGAGAAAAGGGTTG AATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAACAATGGATCCAAA TTCGGCAACTTGAACAGGCATTTGTGTTGACGAAGATGATGACATCAAAAGTTCATCAAA GAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTAGTCCTTAAGTATT TCAGGAATCTTCATGGCACTTTTCTTATGGGGGTATCATACACAAAGTCCTGCTTTTCTC ATACATATAAACATGGCAGGAGTTTCATACAAGCAATGAACAGACCCTACCATGAGGTAT CACGGTTCTGTAAGGCAATATGTGGCCAGCATATTCGCGATGTTGATAAGCCTAATGTCT TCTTCTTGGGTGGATCCATCTCCCGATCATGTATTTCTGCACCTTATAAACAACTCAAGA TTTTCATGTTATTGGCTCAAAATTTTCATCATAAGGTCCAGATATTTCTCCAGGATGCAA TGAGATCCAATAGTTACAGTAGAGGTTTCGCAACTGAGATAATTACGTTCTGCTTGGCAT ATTTTGTTGTTATATCTCCAATGTGGATTCTGTGGTTCCTCTATTCAACGCGATTTGGCT CAAAGAAATGACCAGTTGCCATAAAACAAGAGTTGCATATACTGTTTTCATGTTTTTACA TTTTACAAGTATAGAAGAGTTGCATGAGATGGTGGAAAATGCGTATAATTATATCTTGTA ATTTATATCGAGCACATTGTATCACATTCCCCATGGAACCTCCCCTTTGCGGGGTGGTGT ATTTATACCCCTAGCTCGCTCGCATTCTTCAGGGACTTGGATGGATAAATTTGTCTACTG ATTTAGGCAGTCCTAGGTCTTCAAAGAAGAAGCATTTTTTTTTGATCGTTCAAAAATGCA TCTTCCTTAAAAA



consensusID : consensus_7772#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 522
fasta sequence
                              [CTTATTGGAACTATGGAACATGATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACCCAGAAAGCAATGTGAAAGCTTTGGAAGATGAGTGTTCCTGTGCAGGTGCAGCTCCTCTGGAGAGTGGTCAGAAAGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCTGAGAAAAGGGTTGAATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAACAATGGATCCAAATTCGGCAACTTGAACAGGCATTTGTGTTGACGAAGATGATGACATCAAAAGTTCATCAAAGAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTAGTCCTTAAGTATTTCAGGAATCTTCATGGCAC-TTTTCTTATGGGGGTATCATACACAAAGTCCTGCTTTTCTCATACATATAAACATGGCAGGAGTTTCATACAAGCAATGGAACAGACCCTACCATGAGGTATCACGGT]

[+] EMBL AU165342             [CTTATTGGAACTATGGAACATGATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACCCAGAAAGCAATGTGAAAGCTTTGGAAGATGAGTGTTCCTGTGCAGGTGCAGCTCCTCTGGAGAGTGGTCAGAAAGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCTGAGAAAAGGGTTGAATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAACAATGGATCCAAATTCGGCAACTTGAACAGGCATTTGTGTTGACGAAGATGATGACATCAAAAGTTCATCAAAGAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTAGTCCTTAAGTATTTCAGGAATCTTCATGGCAC TTTTCTTATGGGGGTATCATACACAAAGTCCTGCTTTTCTCATACATATAAACATGGCAGGAGTTTCATACAAGCAATGGAACAGACCCTACCATGAGGTATCACGGT]
[+] EMBL AU162173             [CTTATTGGAACTATGGAACATGATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACCCAGAAAGCAATGTGAAAGCTTTGGAAGATGAGTGTTCCTGTGCAGGTGCAGCTCCTCTGGAGAGTGGTCAGAAAGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCTGAGAAAAGGGTTGAATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAACAATGGATCCAAATTCGGCAACTTGAACAGGCATTTTTTTTGACGAAGATGATGACATCAAAAGTTCATCAAAGAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTAGTCCTTAAGTATTTCAGGAATCTTCATGGCACTTTTTCTTATGGGGGTATCATACACA                                                                                   ]


>consensus_7772#1 CTTATTGGAACTATGGAACATGATATTGAGATTTTAATGAACAAATATGAGAGTACCAAG AAATCTCAAAGCAAATCCTACCCAGAAAGCAATGTGAAAGCTTTGGAAGATGAGTGTTCC TGTGCAGGTGCAGCTCCTCTGGAGAGTGGTCAGAAAGATGAATGAGAATGCTGACTCAAT AGAATCCCTAGCAAATGGTGCTGAGAAAAGGGTTGAATCTCTGAGTTCAGAAGTCAAAAA GATGGAAGGTGTAATTGCAGAACAATGGATCCAAATTCGGCAACTTGAACAGGCATTTGT GTTGACGAAGATGATGACATCAAAAGTTCATCAAAGAAGCAGGTTATCCGAGACTGCTTA TAAATGGCCTGGAAAAGATTTAGTCCTTAAGTATTTCAGGAATCTTCATGGCACTTTTCT TATGGGGGTATCATACACAAAGTCCTGCTTTTCTCATACATATAAACATGGCAGGAGTTT CATACAAGCAATGGAACAGACCCTACCATGAGGTATCACGGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7772#0      TGGACACCGCCGCGGCGGCGGAGAGCGCAAACCCCCGCCACCCCCCTCGCCGCCCGCCGT 60
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      AAAACCCTAAAACCATGGCCGCCGCGGCGGAGGCCGTCCTCTTCCTCCTCCACCACCACC 120
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      TCGCCTTCTTCGGGCTACGCATCTCGCCCTCCGTCTCCGTCCCCTCGCCCCGCCGCCGCT 180
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      CCGCCGGAGAGGTGGCGCTGCTCGCCGTCGTCGTCGTCGCCGCGCTCCTCACCGCCACCA 240
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      CCCATGCCGCGTCCGCAACCATCGAGTCGCGCCCCGCCGACGCCCTGCGGTCGGAGGTCG 300
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      ACGAGCTCAGGCTCAGGGTTCTGCATTTGGAATCTTTGTTGGAGGAAAACACAAAAACTT 360
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      TGAAGAGTAAAGCAAACAATTTGGAAGAGAACAGCAATCTTATTGGAACTATGGAACATG 420
consensus_7772#1      --------------------------------------CTTATTGGAACTATGGAACATG 22
                                                            **********************

consensus_7772#0      ATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACC 480
consensus_7772#1      ATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACC 82
                      ************************************************************

consensus_7772#0      CAGAAAGCAATGTGAAAGCTTTGGAAGATGAG-------------GTGCAGCTCCTCTGG 527
consensus_7772#1      CAGAAAGCAATGTGAAAGCTTTGGAAGATGAGTGTTCCTGTGCAGGTGCAGCTCCTCTGG 142
                      ********************************             ***************

consensus_7772#0      AGAGTGGTCAGAAAGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCT 587
consensus_7772#1      AGAGTGGTCAGAAAGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCT 202
                      ************************************************************

consensus_7772#0      GAGAAAAGGGTTGAATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAA 647
consensus_7772#1      GAGAAAAGGGTTGAATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAA 262
                      ************************************************************

consensus_7772#0      CAATGGATCCAAATTCGGCAACTTGAACAGGCATTTGTGTTGACGAAGATGATGACATCA 707
consensus_7772#1      CAATGGATCCAAATTCGGCAACTTGAACAGGCATTTGTGTTGACGAAGATGATGACATCA 322
                      ************************************************************

consensus_7772#0      AAAGTTCATCAAAGAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTA 767
consensus_7772#1      AAAGTTCATCAAAGAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTA 382
                      ************************************************************

consensus_7772#0      GTCCTTAAGTATTTCAGGAATCTTCATGGCACTTTTCTTATGGGGGTATCATACACAAAG 827
consensus_7772#1      GTCCTTAAGTATTTCAGGAATCTTCATGGCACTTTTCTTATGGGGGTATCATACACAAAG 442
                      ************************************************************

consensus_7772#0      TCCTGCTTTTCTCATACATATAAACATGGCAGGAGTTTCATACAAGCAATG-AACAGACC 886
consensus_7772#1      TCCTGCTTTTCTCATACATATAAACATGGCAGGAGTTTCATACAAGCAATGGAACAGACC 502
                      *************************************************** ********

consensus_7772#0      CTACCATGAGGTATCACGGTTCTGTAAGGCAATATGTGGCCAGCATATTCGCGATGTTGA 946
consensus_7772#1      CTACCATGAGGTATCACGGT---------------------------------------- 522
                      ********************                                        

consensus_7772#0      TAAGCCTAATGTCTTCTTCTTGGGTGGATCCATCTCCCGATCATGTATTTCTGCACCTTA 1006
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      TAAACAACTCAAGATTTTCATGTTATTGGCTCAAAATTTTCATCATAAGGTCCAGATATT 1066
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      TCTCCAGGATGCAATGAGATCCAATAGTTACAGTAGAGGTTTCGCAACTGAGATAATTAC 1126
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      GTTCTGCTTGGCATATTTTGTTGTTATATCTCCAATGTGGATTCTGTGGTTCCTCTATTC 1186
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      AACGCGATTTGGCTCAAAGAAATGACCAGTTGCCATAAAACAAGAGTTGCATATACTGTT 1246
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      TTCATGTTTTTACATTTTACAAGTATAGAAGAGTTGCATGAGATGGTGGAAAATGCGTAT 1306
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      AATTATATCTTGTAATTTATATCGAGCACATTGTATCACATTCCCCATGGAACCTCCCCT 1366
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      TTGCGGGGTGGTGTATTTATACCCCTAGCTCGCTCGCATTCTTCAGGGACTTGGATGGAT 1426
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      AAATTTGTCTACTGATTTAGGCAGTCCTAGGTCTTCAAAGAAGAAGCATTTTTTTTTGAT 1486
consensus_7772#1      ------------------------------------------------------------
                                                                                  

consensus_7772#0      CGTTCAAAAATGCATCTTCCTTAAAAA 1513
consensus_7772#1      ---------------------------
                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)