These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7772#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1513 fasta sequence [TGGACACCGCCGCGGCGGCGGAGAGCGCAAACCCCCGCCACCCCCCTCGCCGCCCGCCGTAAAACCCTAAAACCATGGCCGCCGCGGCGGAGGCCGTCCTCTTCCTCCTCCACCACCACCTCGCCTTCTTCGGGCTACGCATCTCGCCCTCCGTCTCCGTCCCCTCGCCCCGCCGCCGCTCCGCCGGAGAGGTGGCGCTGCTCGCCGTCGTCGTCGTCGCCGCGCTCCTCACCGCCACCACCCATGCCGCGTCCGCAACCATCGAGTCGCGCCCCGCCGACGCCCTGCGGTCGGAGGTCGACGAGCTCAGGCTCAGGGTTCTGCATTTGGAATCTTTGTTGGAGGAAAACACAAAAACTTTGAAGAGTAAAGCAAACAATTTGGAAGAGAACAGCAATCTTATTGGAACTATGGAACATGATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACCCAGAAAGCAATGTGAAAGCTTTGGAAGATGAGGTGCAGCTCCTCTGGAGAGTGGTCAGAAAGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCTGAGAAAAGGGTTGAATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAACAATGGATCCAAATTCGGCAACTTGAACAGGCATTTGTGTTGACGAAGATGATGACATCAAAAGTTCATCAAAGAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTAGTCCTTAAGTATTTCAGGAATCTTCATGGCACTTTTCTTATGGGGGTATCATACACAAAGTCCTGCTTTTCTCATACATATAAACATGGCAGGAGTTTCATACAAGCAATGAACAGACCCTACCATGAGGTATCACGGTTCTGTAAGGCAATATGTGG-CCAGCATATT-CGCGATGTTGATAAG-CCTAATGTCTTCTTCTTGGGTGGATCCATCTCCCGATCATGTATTTCTGCACCTTATAAACAACTCAAGATTTTCATGTTATTGGCTCAAAATTTTCATCATAAGGTCCAGATATTTCTCCAGGATGCAATGAGATCCAATAGTTACAGTAGAGGTTTCGCAACTGAGA-TAATTACGTTCTGCTTGGCATATTTTGTTGTTATATCTCCAATGTGGATTCTGTGGTTCCTCTATTCAACGCGATTTGGCTCAAAGAAATGACCAGTTG-CCATAAAACAAGAGTTGCATATACTGTTTTCATGTTTTTACATTTTACAAGTATAGAAGAGTTGCATGAGATGGTGGAAAATGCGTATAATTATATCTTGTAATTTATATCGAGCACATTGTATCACATTCCCCATGGAACCTCCCCTTTGCGGGGTGGTGTATTTATACCCCTAGCTCGCTCGCATTCTTCAGGGACTTGGATGGATAAATTTGTCTACTGATTTAGGCAGTCCTAGGTCTTCAAAGAAGAAGCATTTTTTTTTGATCGTTCAAAAATGCATCTTCCTTAAAAA] [+] EMBL AK102077 [TGGACACCGCCGCGGCGGCGGAGAGCGCAAACCCCCGCCACCCCCCTCGCCGCCCGCCGTAAAACCCTAAAACCATGGCCGCCGCGGCGGAGGCCGTCCTCTTCCTCCTCCACCACCACCTCGCCTTCTTCGGGCTACGCATCTCGCCCTCCGTCTCCGTCCCCTCGCCCCGCCGCCGCTCCGCCGGAGAGGTGGCGCTGCTCGCCGTCGTCGTCGTCGCCGCGCTCCTCACCGCCACCACCCATGCCGCGTCCGCAACCATCGAGTCGCGCCCCGCCGACGCCCTGCGGTCGGAGGTCGACGAGCTCAGGCTCAGGGTTCTGCATTTGGAATCTTTGTTGGAGGAAAACACAAAAACTTTGAAGAGTAAAGCAAACAATTTGGAAGAGAACAGCAATCTTATTGGAACTATGGAACATGATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACCCAGAAAGCAATGTGAAAGCTTTGGAAGATGAGGTGCAGCTCCTCTGGAGAGTGGTCAGAAAGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCTGAGAAAAGGGTTGAATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAACAATGGATCCAAATTCGGCAACTTGAACAGGCATTTGTGTTGACGAAGATGATGACATCAAAAGTTCATCAAAGAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTAGTCCTTAAGTATTTCAGGAATCTTCATGGCACTTTTCTTATGGGGGTATCATACACAAAGTCCTGCTTTTCTCATACATATAAACATGGCAGGAGTTTCATACAAGCAATGAACAGACCCTACCATGAGGTATCACGGTTCTGTAAGGCAATATGTGG CCAGCATATT CGCGATGTTGATAAG CCTAATGTCTTCTTCTTGGGTGGATCCATCTCCCGATCATGTATTTCTGCACCTTATAAACAACTCAAGATTTTCATGTTATTGGCTCAAAATTTTCATCATAAGGTCCAGATATTTCTCCAGGATGCAATGAGATCCAATAGTTACAGTAGAGGTTTCGCAACTGAGA TAATTACGTTCTGCTTGGCATATTTTGTTGTTATATCTCCAATGTGGATTCTGTGGTTCCTCTATTCAACGCGATTTGGCTCAAAGGAATGACCAGTTG CCATAAAACAAGAGTTGCATATACTGTTTTCATGTTTTTACATTTTACAAGTATAGAAGAGTTGCATGAGATGGTGGAAAATGCGTATAATTATATCTTGTAATTTATATCGAGCACATTGTATCACATTCCCCATGGAACCTCCCCTTTGCGGGGTGGTGTAT ] [+] EMBL C98634 [ TATGTGGCCCAGCNTATTCCGCGATGTTGATAAGCCCTAATGTCTTCTTCTTGGGTGGATCCATCTCCCGATCATGTATTTCTGCACCTTATAAACAACTCAAGATTTTCATGTTATTGGCTCAAAATTTTCANCATAAGGTCCAGATATTTCTCCAGGATGCAATGAGATCCAATAGTTACAGTAGAGGTTTCGCAACTGAGA TAATTACGTTCTGCTTGGCATATTTTGTTGTTATATCTCCAATGTGGATTCTGTGGTTCCTCTATTCAACGCGATTTGGCTCAAAGAAATGACCAGTTG CCATAAAACAAGAGTTGCATATACTGTTTTCATGTTTTTACATTTTACAAGTATAGAAGAGTTGCATGAGATGGTGGAAAATGCGTATAATTATATCTTGTAATTTATATCGAGCACATTGTATCACATTCCCCATGGAACCTCCCCTTTGCGGGGTGGTGTATTTATACCCCTAGCTCGCTCGCATTCTTCAGGGACTTGGATGGATAAATTTGTCTACTGATTTAGGCAGTCCTAGGTCTTCAAAGAAGAAGCATTTTTTTTTGATCGTTCAAAAATGCATCTTCCTTAAAAA] [+] EMBL C98603 [ ACTCNNGATTTTCATGTTATTGGCTCAAAATTTTCATCATAAGGTCCAGATATTTCTCCAGGATGCAATGAGATCCAATAGTTACAGTAGAGGTTTCGCAACTGAGATTAATTACGTTCTGCTTGGCATATTTTGTTGTTATATCTCCAATGTGGATTCTGTGGTTCCTCTATTCAACGCGATTTGGCTCAAAGAAATGACCAGTTGCCCATAAAACAAGAGTTGCATATACTGTTTTCATGTTTTTACATTTTACAAGTATAGAAGAGTTGCATGAGATGGTGGAAAATGCGTATAATTATATCTTGTAATTTATATCGAGCACATTGTATCACATTCCCCATGGAACCTCCCCTTTGCGGGGTGGTGTATTTATACCCCTAGCTCGCTCGCATTCTTCAGGGACTTGGATGGATAAATTTGTCTACTGATTTAGGCAGTCCTAGGTCTTCAAAGAAGAAGCATTTTTTTTTGATCGTTCAAAAATGCATCTTCCTTAAAAA] consensusID : consensus_7772#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 522 fasta sequence [CTTATTGGAACTATGGAACATGATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACCCAGAAAGCAATGTGAAAGCTTTGGAAGATGAGTGTTCCTGTGCAGGTGCAGCTCCTCTGGAGAGTGGTCAGAAAGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCTGAGAAAAGGGTTGAATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAACAATGGATCCAAATTCGGCAACTTGAACAGGCATTTGTGTTGACGAAGATGATGACATCAAAAGTTCATCAAAGAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTAGTCCTTAAGTATTTCAGGAATCTTCATGGCAC-TTTTCTTATGGGGGTATCATACACAAAGTCCTGCTTTTCTCATACATATAAACATGGCAGGAGTTTCATACAAGCAATGGAACAGACCCTACCATGAGGTATCACGGT] [+] EMBL AU165342 [CTTATTGGAACTATGGAACATGATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACCCAGAAAGCAATGTGAAAGCTTTGGAAGATGAGTGTTCCTGTGCAGGTGCAGCTCCTCTGGAGAGTGGTCAGAAAGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCTGAGAAAAGGGTTGAATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAACAATGGATCCAAATTCGGCAACTTGAACAGGCATTTGTGTTGACGAAGATGATGACATCAAAAGTTCATCAAAGAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTAGTCCTTAAGTATTTCAGGAATCTTCATGGCAC TTTTCTTATGGGGGTATCATACACAAAGTCCTGCTTTTCTCATACATATAAACATGGCAGGAGTTTCATACAAGCAATGGAACAGACCCTACCATGAGGTATCACGGT] [+] EMBL AU162173 [CTTATTGGAACTATGGAACATGATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACCCAGAAAGCAATGTGAAAGCTTTGGAAGATGAGTGTTCCTGTGCAGGTGCAGCTCCTCTGGAGAGTGGTCAGAAAGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCTGAGAAAAGGGTTGAATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAACAATGGATCCAAATTCGGCAACTTGAACAGGCATTTTTTTTGACGAAGATGATGACATCAAAAGTTCATCAAAGAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTAGTCCTTAAGTATTTCAGGAATCTTCATGGCACTTTTTCTTATGGGGGTATCATACACA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7772#0 TGGACACCGCCGCGGCGGCGGAGAGCGCAAACCCCCGCCACCCCCCTCGCCGCCCGCCGT 60 consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 AAAACCCTAAAACCATGGCCGCCGCGGCGGAGGCCGTCCTCTTCCTCCTCCACCACCACC 120 consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 TCGCCTTCTTCGGGCTACGCATCTCGCCCTCCGTCTCCGTCCCCTCGCCCCGCCGCCGCT 180 consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 CCGCCGGAGAGGTGGCGCTGCTCGCCGTCGTCGTCGTCGCCGCGCTCCTCACCGCCACCA 240 consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 CCCATGCCGCGTCCGCAACCATCGAGTCGCGCCCCGCCGACGCCCTGCGGTCGGAGGTCG 300 consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 ACGAGCTCAGGCTCAGGGTTCTGCATTTGGAATCTTTGTTGGAGGAAAACACAAAAACTT 360 consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 TGAAGAGTAAAGCAAACAATTTGGAAGAGAACAGCAATCTTATTGGAACTATGGAACATG 420 consensus_7772#1 --------------------------------------CTTATTGGAACTATGGAACATG 22 ********************** consensus_7772#0 ATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACC 480 consensus_7772#1 ATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACC 82 ************************************************************ consensus_7772#0 CAGAAAGCAATGTGAAAGCTTTGGAAGATGAG-------------GTGCAGCTCCTCTGG 527 consensus_7772#1 CAGAAAGCAATGTGAAAGCTTTGGAAGATGAGTGTTCCTGTGCAGGTGCAGCTCCTCTGG 142 ******************************** *************** consensus_7772#0 AGAGTGGTCAGAAAGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCT 587 consensus_7772#1 AGAGTGGTCAGAAAGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCT 202 ************************************************************ consensus_7772#0 GAGAAAAGGGTTGAATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAA 647 consensus_7772#1 GAGAAAAGGGTTGAATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAA 262 ************************************************************ consensus_7772#0 CAATGGATCCAAATTCGGCAACTTGAACAGGCATTTGTGTTGACGAAGATGATGACATCA 707 consensus_7772#1 CAATGGATCCAAATTCGGCAACTTGAACAGGCATTTGTGTTGACGAAGATGATGACATCA 322 ************************************************************ consensus_7772#0 AAAGTTCATCAAAGAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTA 767 consensus_7772#1 AAAGTTCATCAAAGAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTA 382 ************************************************************ consensus_7772#0 GTCCTTAAGTATTTCAGGAATCTTCATGGCACTTTTCTTATGGGGGTATCATACACAAAG 827 consensus_7772#1 GTCCTTAAGTATTTCAGGAATCTTCATGGCACTTTTCTTATGGGGGTATCATACACAAAG 442 ************************************************************ consensus_7772#0 TCCTGCTTTTCTCATACATATAAACATGGCAGGAGTTTCATACAAGCAATG-AACAGACC 886 consensus_7772#1 TCCTGCTTTTCTCATACATATAAACATGGCAGGAGTTTCATACAAGCAATGGAACAGACC 502 *************************************************** ******** consensus_7772#0 CTACCATGAGGTATCACGGTTCTGTAAGGCAATATGTGGCCAGCATATTCGCGATGTTGA 946 consensus_7772#1 CTACCATGAGGTATCACGGT---------------------------------------- 522 ******************** consensus_7772#0 TAAGCCTAATGTCTTCTTCTTGGGTGGATCCATCTCCCGATCATGTATTTCTGCACCTTA 1006 consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 TAAACAACTCAAGATTTTCATGTTATTGGCTCAAAATTTTCATCATAAGGTCCAGATATT 1066 consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 TCTCCAGGATGCAATGAGATCCAATAGTTACAGTAGAGGTTTCGCAACTGAGATAATTAC 1126 consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 GTTCTGCTTGGCATATTTTGTTGTTATATCTCCAATGTGGATTCTGTGGTTCCTCTATTC 1186 consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 AACGCGATTTGGCTCAAAGAAATGACCAGTTGCCATAAAACAAGAGTTGCATATACTGTT 1246 consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 TTCATGTTTTTACATTTTACAAGTATAGAAGAGTTGCATGAGATGGTGGAAAATGCGTAT 1306 consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 AATTATATCTTGTAATTTATATCGAGCACATTGTATCACATTCCCCATGGAACCTCCCCT 1366 consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 TTGCGGGGTGGTGTATTTATACCCCTAGCTCGCTCGCATTCTTCAGGGACTTGGATGGAT 1426 consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 AAATTTGTCTACTGATTTAGGCAGTCCTAGGTCTTCAAAGAAGAAGCATTTTTTTTTGAT 1486 consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 CGTTCAAAAATGCATCTTCCTTAAAAA 1513 consensus_7772#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||