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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7773#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1277 fasta sequence
[CATCGTGTCATAGGTGTGGTGTGTGGAGAAGCGGTGGACCGACCGACGACGGCGGCAACCCGCACGGCGAGGCGAGGCGAGGCCGACGGCGGCGGCGCGCGTCCACGAAAAGCGGGGGGGTATCTACCTGTTTTTCGTATAAGCCCCTCAAGATCTAGGAAATCGCGGGGCGTGGTCCTCGGCCCGGGGCCTTTAAATGCGGGGGCACCCATGTAGGCCGGAGCAGAGCGCCACGAGGCGAGTTGTTGGGTGTTCCCTAGACTAGCCGTCTCTTCCTCCTCTCCCTCTCCTCCTCCTCCCGCCGCCGCCTGCAACCGCTTCACGTGGCCTGATCCTCCTCCGGAGCTCTCCCTTTCGACCCCAACAAATGGAGCCCAAGAGGTCCCCTGCGCTGCCGCAGCCCAACGTGGAGACCAAGAAGTCCCCTCCCCGCGCTGCCGCCGGAGGAGGCGGCGGCGGCACAGCTGCCGTCGGTGGCGAGTCGCCGTTGAGCAGCCTGTTCCACCAGCCGTCGCATGGGGCAAAAGGCAAAGAAGACATATACTCCATTTTCTACAAAGGGCAGAACGGGACTGCACAAGCTGGGACTGCAGATGGTAAATCCCAGTGGACTCCTCCTAAAAGTCGCACCGTGTACACCAAGGATAACAAACAGTCAAATCAGTATGATTCGGTTGATACGTCCTGTTTTGGTTCTTCTGTGAACTATGGTGGTCGAGACTATTATGGAATCTCTGGACACAAGCAATCCACAGAATCCAATGATTATAAGGCGGACAAAAAGGACACTTCCACAGATTCTCATGGTGACTGGTGGCAAGGTTCGTTTTACTACTAAGCGAACTTGGTGGCCTCTCCCTTGGTGGAAAAGGGAATGGAATGGGA-GGGGTT-GGAGCTGGTTTTGCTTCACTGTTGCTATGCTGGCCGTATCAGTTACCTAAATCATACTAGTGTGACATCGTCCATCAGTGGTGGCAGTATTTGGATCATCACACCTGGGCAGATGTAGTGTGTCTTTACCTTTTCATTTCGTAGCTTGTGCTTTAGATGTGAAATGAATCGAACTTACAAGCACAGTAAGTTTTAGGTCGCAGGTTGCATAAATGGTCCCTATCCATTCTGCCAAATCTGGTCAGTAACCAGATTGGATCAGTTTGGTCTGGCTCTCTTAGATCGAAGTATATGTTCCTTGTACTCTCGGATCTTCGCTCCGGAGCCAAGAAGGCTGGAGAAGTGGAGATCACTTGCATTGTAAACATGTACTCGTTTAATTTCAA]
[+] EMBL AK065438 [CATCGTGTCATAGGTGTGGTGTGTGGAGAAGCGGTGGACCGACCGACGACGGCGGCAACCCGCACGGCGAGGCGAGGCGAGGCCGACGGCGGCGGCGCGCGTCCACGAAAAGCGGGGGGGTATCTACCTGTTTTTCGTATAAGCCCCTCAAGATCTAGGAAATCGCGGGGCGTGGTCCTCGGCCCGGGGCCTTTAAATGCGGGGGCACCCATGTAGGCCGGAGCAGAGCGCCACGAGGCGAGTTGTTGGGTGTTCCCTAGACTAGCCGTCTCTTCCTCCTCTCCCTCTCCTCCTCCTCCCGCCGCCGCCTGCAACCGCTTCACGTGGCCTGATCCTCCTCCGGAGCTCTCCCTTTCGACCCCAACAAATGGAGCCCAAGAGGTCCCCTGCGCTGCCGCAGCCCAACGTGGAGACCAAGAAGTCCCCTCCCCGCGCTGCCGCCGGAGGAGGCGGCGGCGGCACAGCTGCCGTCGGTGGCGAGTCGCCGTTGAGCAGCCTGTTCCACCAGCCGTCGCATGGGGCAAAAGGCAAAGAAGACATATACTCCATTTTCTACAAAGGGCAGAACGGGACTGCACAAGCTGGGACTGCAGATGGTAAATCCCAGTGGACTCCTCCTAAAAGTCGCACCGTGTACACCAAGGATAACAAACAGTCAAATCAGTATGATTCGGTTGATACGTCCTGTTTTGGTTCTTCTGTGAACTATGGTGGTCGAGACTATTATGGAATCTCTGGACACAAGCAATCCACAGAATCCAATGATTATAAGGCGGACAAAAAGGACACTTCCACAGATTCTCATGGTGACTGGTGGCAAGGTTCGTTTTACTACTAAGCGAACTTGGTGGCCTCTCCCTTGGTGGAAAAGGGAATGGAATGGGA GGGGTT GGAGCTGGTTTTGCTTCACTGTTGCTATGCTGGCCGTATCAGTTACCTAAATCATACTAGTGTGACATCGTCCATCAGTGGTGGCAGTATTTGGATCATCACACCTGGGCAGATGTAGTGTGTCTTTACCTTTTCATTTCGTAGCTTGTGCTTTAGATGTGAAATGAATCGAACTTACAAGCACAGTAAGTTTTAGGTCGCAGGTTGCATAAATGGTCCCTATCCATTCTGCCAAATCTGGTCAGTAACCAGATTGGATCAGTTTGGTCTGGCTCTCTTAGATCGAAGTATATGTTCCTTGTACTCTCGGATCTTCGCTCCGGAGCCAAGAAGGCTGGAGAAGTGGAGATCACTTGCATTGTAAACATGTACTCGTTTAATTTCAA]
[+] EMBL CF324686 [ CCGTCGGTGGCGAGTCGCCGTTGAGCAGCCTGTTCCACCAGCCGTCGCATGGGGCAAAAGGCAAAGAAGACATATACTCCATTTTCTACAAAGGGCAGAACGGGACTGCACAAGCTGGGACTGCAGATGGTAAATCCCAGTGGACTCCTCCTAAAAGTCGCACCGTGTACACCAAGGATAACAAACAGTCAAATCAGTATGATTCGGTTGATACGTCCTGTTTTGGTTCTTCTGTGAACTATGGTGGTCGAGACTATTATGGAATCTCTGGACACAAGCAATCCACAGAATCCAATGATTATAAGGCGGACAAAAAGGACCCTTCCACAGATTCTCATGGTGACTGGTGGCAAGGTTCGTTTTACTACTAAGCGAACTTGGTGGCCTCTCCCTTGGTGGAAAAGGGAATGGAATGGGAGGGGGTTGGGAGCTGGTTTTGCTTCACTGTTGCTATGCTGGCCGTATCAGTTACCTAAATCATACT ]
consensusID : consensus_7773#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence
[ACGAGGCGAGTTGTTGGGTGTTCCCTAGACTAGCCGTCTCTTCCTCCTCTCCCTCTCCTCCTCCTCCCGCCGCCGCCTGCAACCGCTTCACGTGGCCTGATCCTCCTCCGGAGCTCTCCCTTTCGACCCCAACAAATGGAGCCCAAGAGGTCCCCTGCGCTGCCGCAGCCCAACGTGGAGACCAAGAAGTCCCCTCCCCGCGCTGCCGCCGGAGGAGGCGGCGGCGGCACAGCTGCCGTCGGTGGCGAGTCGCCGTTGAGCAGCCTGTTCCACCAGCCGTCGCATGGGGTACTGATTCCTGACGCCTTTTGCATGTTTGATGTTATGCCTGTGTTCAGGCCCGACGTGAATCTTTCCTCCGAACAAGACGAAATTCGAGGGTGTTCTTTCGTTGTTTGTTTGTTTTTTTTGTTTTATTTTTTTTTGTTACGGTGACGCGGATGACACGGGATGAGTCCCCCTCCGTCTGCGAGGCGTTGATACATGCTGAATTTGCCTTTCATTCCATCGCTGTTGCACACGCATAAATTTAGTATG]
[+] EMBL CF313833 [ACGAGGCGAGTTGTTGGGTGTTCCCTAGACTAGCCGTCTCTTCCTCCTCTCCCTCTCCTCCTCCTCCCGCCGCCGCCTGCAACCGCTTCACGTGGCCTGATCCTCCTCCGGAGCTCTCCCTTTCGACCCCAACAAATGGAGCCCAAGAGGTCCCCTGCGCTGCCGCAGCCCAACGTGGAGACCAAGAAGTCCCCTCCCCGCGCTGCCGCCGGAGGAGGCGGCGGCGGCACAGCTGCCGTCGGTGGCGAGTCGCCGTTGAGCAGCCTGTTCCACCAGCCGTCGCATGGGGTACTGATTCCTGACGCCTTTTGCATGTTTGATGTTATGCCTGTGTTCAGGCCCGACGTGAATCTTTCCTCCGAACAAGACGAAATTCGAGGGTGTTCTTTCGTTGTTTGTTTGTTTTTTTTGTTTTATTTTTTTTTGTTACGGTGACGCGGATGACACGGGATGAGTCCCCCTCCGTCTGCGAGGCGTTGATACATGCTGAATTTGCCTTTCATTCCATCGCTGTTGCACACGCATAAATTTAGTATG]
consensusID : consensus_7773#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence
[TTTTTTTTTTTTTTATAAACAATCTCTAAGGTTGATTTCCAAAAGTATTCTACAAACTATCGCGTATCCACTTGGAAAGACAGGCGCCTGTACATTGAAAATTACTAATTTTCGCAAATAGAAAGAGGAGGGNGGGGGGGGGCATATCTACTTTAAAAGCTTCCTAAATTTATGCGTGTGCAACAGCGATGGAATGAAAGGCAAATTCACCTTGTTTCAACCCCTCCCAAACGGAGGGGGACTCATCCCGTGTCATCCGCGTCACCGTACCAAAAAAAATTAAACCAAAAAAACCAACCAACCACCGAAAGAACCCCCTCAAATTTCGTCTTGTTCGGAGGAAAAATTCACGTCGGGCCTGAACACAGGCTTAACATCAAAC]
[+] EMBL CF313832 [TTTTTTTTTTTTTTATAAACAATCTCTAAGGTTGATTTCCAAAAGTATTCTACAAACTATCGCGTATCCACTTGGAAAGACAGGCGCCTGTACATTGAAAATTACTAATTTTCGCAAATAGAAAGAGGAGGGNGGGGGGGGGCATATCTACTTTAAAAGCTTCCTAAATTTATGCGTGTGCAACAGCGATGGAATGAAAGGCAAATTCACCTTGTTTCAACCCCTCCCAAACGGAGGGGGACTCATCCCGTGTCATCCGCGTCACCGTACCAAAAAAAATTAAACCAAAAAAACCAACCAACCACCGAAAGAACCCCCTCAAATTTCGTCTTGTTCGGAGGAAAAATTCACGTCGGGCCTGAACACAGGCTTAACATCAAAC]
consensusID : consensus_7773#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGTGACATCGTCCATCAGTGGTGGCAGTATTTGGATCATCACACCTGGGCAGATGTAGTGTGTCTTTACCNNTTTCATTTCGTAGCTTGTGCTTTAGATGTGAAATGAATCGAACTTACAAGCACAGTAAGTTTTAGGTCGCAGGTTGCATAAATGGTCCCTATCCATTCTGCCCAATCTGGTCAGTAACCCGATTGGATCAATTTGGTCTGGCTCTCTTAGATCGAAGTATATGTTCCTTGTACTCTCGGATTTTCGCTCCGGAGCCAAGAAGGCTGGAGAAGTGGAGATCACTTGCATTGTAAACAGTACTCGTTTAATTTCAAAGAACTTAGCCAAA]
[+] EMBL BQ906957 [CCGCCCACGCGTCCGCCCACGCGTCCGGTGACATCGTCCATCAGTGGTGGCAGTATTTGGATCATCACACCTGGGCAGATGTAGTGTGTCTTTACCNNTTTCATTTCGTAGCTTGTGCTTTAGATGTGAAATGAATCGAACTTACAAGCACAGTAAGTTTTAGGTCGCAGGTTGCATAAATGGTCCCTATCCATTCTGCCCAATCTGGTCAGTAACCCGATTGGATCAATTTGGTCTGGCTCTCTTAGATCGAAGTATATGTTCCTTGTACTCTCGGATTTTCGCTCCGGAGCCAAGAAGGCTGGAGAAGTGGAGATCACTTGCATTGTAAACAGTACTCGTTTAATTTCAAAGAACTTAGCCAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7773#0 CATCGTGTCATAGGTGTGGTGTGTGGAGAAGCGGTGGACCGACCGACGACGGCGGCAACC 60
consensus_7773#3 ------------------------------------------------------------
consensus_7773#1 ------------------------------------------------------------
consensus_7773#2 ------------------------------------------------------------
consensus_7773#0 CGCACGGCGAGGCGAGGCGAGGCCGACGGCGGCGGCGCGCGTCCACGAAAAGCGGGGGGG 120
consensus_7773#3 ------------------------------------------------------------
consensus_7773#1 ------------------------------------------------------------
consensus_7773#2 ------------------------------------------------------------
consensus_7773#0 TATCTACCTGTTTTTCGTATAAGCCCCTCAAGATCTAGGAAATCGCGGGGCGTGGTCCTC 180
consensus_7773#3 ------------------------------------------------------------
consensus_7773#1 ------------------------------------------------------------
consensus_7773#2 ------------------------------------------------------------
consensus_7773#0 GGCCCGGGGCCTTTAAATGCGGGGGCACCCATGTAGGCCGGAGCAGAGCGCCACGAGGCG 240
consensus_7773#3 ------------------------------------------------------------
consensus_7773#1 ------------------------------------------------------------
consensus_7773#2 ------------------------------------------------------------
consensus_7773#0 AGTTGTTGGGTGTTCCCTAGACTAGCCGTCTCTTCCTCCTCTCCCTCTCCTCCTCCTCCC 300
consensus_7773#3 ------------------------------------------------------------
consensus_7773#1 ------------------------------------------------------------
consensus_7773#2 ------------------------------------------------------------
consensus_7773#0 GCCGCCGCCTGCAACCGCTTCACGTGGCCTGATCCTCCTCCGGAGCTCTCCCTTTCGACC 360
consensus_7773#3 ------------------------------------------------------------
consensus_7773#1 ------------------------------------------------------------
consensus_7773#2 ------------------------------------------------------------
consensus_7773#0 CCAACAAATGGAGCCCAAGAGGTCCCCTGCGCTGCCGCAGCCCAACGTGGAGACCAAGAA 420
consensus_7773#3 ------------------------------------------------------------
consensus_7773#1 ------------------------------------------------------------
consensus_7773#2 ------------------------------------------------------------
consensus_7773#0 GTCCCCTCCCCGCGCTGCCGCCGGAGGAGGCGGCGGCGGCACAGCTGCCGTCGGTGGCGA 480
consensus_7773#3 ------------------------------------------------------------
consensus_7773#1 ------------------------------------------------------------
consensus_7773#2 ------------------------------------------------------------
consensus_7773#0 GTCGCCGTTGAGCAGCCTGTTCCACCAGCCGTCGCATGGGGCAAAAGGCAAAGAAGACAT 540
consensus_7773#3 ------------------------------------------------------------
consensus_7773#1 ------------------------------------------------------------
consensus_7773#2 ------------------------------------------------------------
consensus_7773#0 ATACTCCATTTTCTACAAAGGGCAGAACGGGACTGCACAAGCTGGGACTGCAGATGGTAA 600
consensus_7773#3 ------------------------------------------------------------
consensus_7773#1 ------------------------------------------------------------
consensus_7773#2 ------------------------------------------------------------
consensus_7773#0 ATCCCAGTGGACTCCTCCTAAAAGTCGCACCGTGTACACCAAGGATAACAAACAGTCAAA 660
consensus_7773#3 ------------------------------------------------------------
consensus_7773#1 ------------------------------------------------------------
consensus_7773#2 ------------------------------------------------------------
consensus_7773#0 TCAGTATGATTCGGTTGATACGTCCTGTTTTGGTTCTTCTGTGAACTATGGTGGTCGAGA 720
consensus_7773#3 ------------------------------------------------------------
consensus_7773#1 ------------------------------------------------------------
consensus_7773#2 ------------------------------------------------------------
consensus_7773#0 CTATTATGGAATCTCTGGACACAAGCAATCCACAGAATCCAATGATTATAAGGCGGACAA 780
consensus_7773#3 ------------------------------------------------------------
consensus_7773#1 -------ACGAGGCGAGTTGTTGGGTGTTCCCTAGACTAGCCGTCTCTTCCTCCTCTCCC 53
consensus_7773#2 ----------------------TTTTTTTTTTTTTTATAAACAATCTCTAAGGTTGATTT 38
consensus_7773#0 AAAGGACACTTCCACAGATTCTCATGGTGACTGGTGGCAAGGTTCGTTTTACTACTAAGC 840
consensus_7773#3 ------------------------------------------------------------
consensus_7773#1 TCTCCTCCTCCTCCCGCCGCCGCCTGCAACCGCTTCACGTGGCCTGATCCTCCTCCGGAG 113
consensus_7773#2 CCAAAAGTATTCTACAAACTATCGCGTATCCACTTGGAAAGACAGGCGCCTGTACATTGA 98
consensus_7773#0 GAACTTGGTGGCCTCTCCCTTGGTGGAAAAGGGAATGGAATGGGAGGGGTTGGAGCTGGT 900
consensus_7773#3 ------------------------------------------------------------
consensus_7773#1 CTCTCCCTTTCGACCCCAACAAATGGAGCCCAAGAGGTCCCCTGCGCTGCCGCAGCCCAA 173
consensus_7773#2 AAATTACT---AATTTTCGCAAATAGAAAGAGGAGGGNGGGGGGGGGCATATCTACTTTA 155
consensus_7773#0 TTTGCTTCACTGTTGCTATGCTGGCCGTATCAGTTACCTAAATCATACTAGTGTGACATC 960
consensus_7773#3 --------------------CCGCCCACG-CGTCCGCCCA---CGCGTCCG-GTGACATC 35
consensus_7773#1 CGTGGAGACCAAGAAGTCCCCTCCCCGCGCTGCCGCCGGAGGAGGCGGCGGCGGCACAGC 233
consensus_7773#2 AAAGCTTC-CTAAATTTATGC-GTGTGCAACAGCGATGGAATGAAAGGCAAATTCACCTT 213
* * **
consensus_7773#0 GTCCATCAGTGGTGGCAGTATTTGGATCATCACACCTGGGCAGATGTAGTGTGTCTTTAC 1020
consensus_7773#3 GTCCATCAGTGGTGGCAGTATTTGGATCATCACACCTGGGCAGATGTAGTGTGTCTTTAC 95
consensus_7773#1 TGCCGTCGGTGGCGAGTCGCCGTTGAGCAGCCTGTTCCACCAGCCGTCGCATGGGGT-AC 292
consensus_7773#2 GTT--TCAACCCCTCCCAAACGGAGGGGGACTCATCCCG-----TGTCATCCGCGTC-AC 265
** * * ** * **
consensus_7773#0 CTTTT-CATTTCGTAGCTTGTGCTTTAGATGTGAAATGAATCGAACTTACAAGCACAGTA 1079
consensus_7773#3 CNNTTTCATTTCGTAGCTTGTGCTTTAGATGTGAAATGAATCGAACTTACAAGCACAGTA 155
consensus_7773#1 TGATT-CCTGACGCCTTTTGCATGTTTGATGTTATGC---CTGTGTTCAGGCCCGACGTG 348
consensus_7773#2 CGTAC---CAAAAAAAATTAAACCAAAAAAACCAACC-AACCACCGAAAGAACCCCCTCA 321
** * * * *
consensus_7773#0 AGTTTTAGGTCGCAGGTTGCATAAATGGTCCCTATCCATTCTGCCAAATCTGGTCAGTAA 1139
consensus_7773#3 AGTTTTAGGTCGCAGGTTGCATAAATGGTCCCTATCCATTCTGCCCAATCTGGTCAGTAA 215
consensus_7773#1 AATCTTTCCTC-CGAACAAGACGAA--ATTCGAGGGTGTTCTTTCG---TTGTTTGTTTG 402
consensus_7773#2 AATTTCGTCTT---GTTCGGAGGAAAAATTCACGTCGGGCCTG--AACACAGGCTTAACA 376
* * * * * ** * * ** *
consensus_7773#0 CCAGATTGGATCAGTTTGGTCTGGCTCTCTTAGATCGAAGTATATGTTCCTTGTACTCTC 1199
consensus_7773#3 CCCGATTGGATCAATTTGGTCTGGCTCTCTTAGATCGAAGTATATGTTCCTTGTACTCTC 275
consensus_7773#1 TTTTTTTTGTTTTATTTTTTTTTGTTACGGTGACGCGGATGACACGGGATGAGTCCCCCT 462
consensus_7773#2 TCAAAC------------------------------------------------------ 382
consensus_7773#0 GGATCTTCGCTCCGGAGCCAAGAAGGCTGGAGAAGTGGAGATCACTTGCATTGTAAACAT 1259
consensus_7773#3 GGATTTTCGCTCCGGAGCCAAGAAGGCTGGAGAAGTGGAGATCACTTGCATTGTAAACA- 334
consensus_7773#1 CCGT-----CTGCGAGGCGTTGATACATGCTGAATTTGCCTTTCATTCCATCGCTGTT-- 515
consensus_7773#2 ------------------------------------------------------------
consensus_7773#0 GTACTCGTTTAATTTCAA-------------- 1277
consensus_7773#3 GTACTCGTTTAATTTCAAAGAACTTAGCCAAA 366
consensus_7773#1 GCACACGCATAAATTTAGTATG---------- 537
consensus_7773#2 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||