These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7786#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 909 fasta sequence [TTTTTTTTTTCACAGCTAATTTGGTTTCTGATAGTTCCTTTAGTAGATCAATGGTCTGAATGTTGCAATGTTGAACATTCAAAGACATAAGGTTAATCTTGAGCATCANATCAAAACAATTAGACAGGTACNTAGCTAGAGTTCATTACAAGGTTAGCAGCCTACAATGATCATTACATCAGAGCCTACAACGATCATTACATCAGACAGCACCGGGTTCTCTACTCCTNTGCTATTCCTGAGCCTGTATGTCAGAAACTACAGCCCTACATCAGAGGACGACCTAGGTCACCTATCCATAATTACAACACATGTAAATACAGATAGATACAGGAGATACATAGATTAGAACGGCCGGTTAATCTATGTAAAGTCTCCTCAAAACAGACACCCAAGGCTCAATCAGAGTCACTGTCATGCTCAAGGAAACGATACTCCCTTGGGCCACCAAGCCTTAGTACTATGGTCCCGGCATTTTCCTCATGCCACTCAACGCCTTCCTTCTCCACAAGCTCGGCAACCTACCACAGCCATTTTTACAGAATTCAAAAGCATGGTACATTAGGTAATGAGATTGACCAATTAAGAGTACTAGTCTACAGATTGAAAGAGTAAAGATCAGCAACACAGACACTGTCAAGAGCTGCATGCTAAAAGCATTCTATTATAGTGGGGCCATATAGCCACCACGAGATAGAAAGTAATATAACACAGGAAGGTATCAAGGTATTCAACCAAACATTTCATGAGGGCAGCTCAGTTTCAAGAACATGCTGATAATACTATAAATTTAATGAAGAAACGAAGCATGACAACAAGCAGGCACACATGTGAGGTCCCAGCTTGTCTAAGCAAATACTTACCGCGCGCTTTATTTTTCCCTTCCCTGTGCCTTCTACACCACAACCA] [-] EMBL BQ908131 [TTTTTTTTTTCACAGCTAATTTGGTTTCTGATAGTTCCTTTAGTAGATCAATGGTCTGAATGTTGCAATGTTGAACATTCAAAGACATAAGGTTAATCTTGAGCATCANATCAAAACAATTAGACAGGTACNTAGCTAGAGTTCATTACAAGGTTAGCAGCCTACAATGATCATTACATCAGAGCCTACAACGATCATTACATCAGACAGCACCGGGTTCTCTACTCCTNTGCTATTCCTGAGCCTGTATGTCAGAAACTACAGCCCTACATCAGAGGACGACCTAGGTCACCTATCCATAATTACAACACATGTAAATACAGATAGATACAGGAGATACATAGATTAGAACGGCCGGTTAATCTATGTAAAGTCTCCTCAAAACAGACACCCAAGGCTCAATCAGAGTCACTGTCATGCTCAAGGAAACGATACTCCCTTGGGCCACC ] [+] EMBL CB651716 [ GTTAGCAGCCTACAATGATCATTACATCAGAGCCTACAACGATCATTACATCAGACAGCACC TGTTCTCTACTCCT TGCTATTCCAGAGCCTGTATGTCAGAAACTACAGCCCTACATCAGAGGACGACCTAGGTCACCTATCCATAATTACAACACATGTAAATACAGATAGATACAGGAGATACATAGATTAGAACGGCC GTTAATCTATGTAAAGTCTCCTCAAAACAGACACCCAAGGCTCAATCAGAGTCACTGTCATGCTCAAGGAAACGATACTCCCTTGGGCCACCAAGCCTTAGTACTATGGTCCCGGCATTTTCCTCATGCCACTCAACGCCTTCCTTCTCCACAAGCTCGGCAACCTACCACAGCCATTTTTACAGAATTCAAAAGCATGGTACATTAGGTAATGAGATTGACCAATTAAGAGTACTAGTCTACAGATTGAAAGAGTAAAGATCAGCAACACAGACACTGTCAAGAGCTGCATGCTAAAAGCATTCTATTATAGTGGGGCCATATAGCCACCACGAGATAGAAAGTAATATAACACAGGAAGGTATCAAGGTATTCAACCAAACATTTCATGAGGGCAGCTCAGTTTCAAGAACATGCTGATAATACTATAAATTTAATGAAGAAACGAAGCATGACAACAAGCAGGCACACATGTGAGGTCCCAGCTTGTCTAAGCAAATACTTACCGCGCGCTTTATTTTTCCCTTCCCTGTGCCTTCTACACCACAACCA] consensusID : consensus_7786#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 547 fasta sequence [TGTTTCTGATAGTTCCTCTATTAGATCAATTGTCTGAATGTTGCAATGTTGACATTCAAGACATAAGTTATCTTGAGCATCACATCAAAACAATTAGACAGGTACATAGCTAGAGTTCATTACAAGGTTAGCAGCCTACAATGATCATTACATCAGAGCCTACAACGATCATTACATCAGACAGCACCTGTTCTCTACTCCTTGCTATTCCAGAGCCTGTATGTCAGAAACTACAGCCCTACATCAGAGGACGACCTAGGTCACCTATCCATAATTACAACACATGTAAATACAGATAGATACAGGAGATACATAGATTAGAACGGCCGTTAATCTATGTAAAGTCTCCTCAAAACAGACACCCAAGGCTCAATCAGAGTCACTGTCATGCTCAAGGAAACGATACTCCCTTGGGCCACCAAGCCTTAGTACTATGGTCCCGGCATTTTCCTCATGCCACTCAACGCCTTCCTTCTCCACAAGCTCGGCAACCGCGCGCTTTATTTTTCCCTTCCCTGTGCCTTCTACACCACAACCAGTAATTACT] [+] EMBL CB677322 [TGTTTCTGATAGTTCCTCTATTAGATCAATTGTCTGAATGTTGCAATGTTGACATTCAAGACATAAGTTATCTTGAGCATCACATCAAAACAATTAGACAGGTACATAGCTAGAGTTCATTACAAGGTTAGCAGCCTACAATGATCATTACATCAGAGCCTACAACGATCATTACATCAGACAGCACCTGTTCTCTACTCCTTGCTATTCCAGAGCCTGTATGTCAGAAACTACAGCCCTACATCAGAGGACGACCTAGGTCACCTATCCATAATTACAACACATGTAAATACAGATAGATACAGGAGATACATAGATTAGAACGGCCGTTAATCTATGTAAAGTCTCCTCAAAACAGACACCCAAGGCTCAATCAGAGTCACTGTCATGCTCAAGGAAACGATACTCCCTTGGGCCACCAAGCCTTAGTACTATGGTCCCGGCATTTTCCTCATGCCACTCAACGCCTTCCTTCTCCACAAGCTCGGCAACCGCGCGCTTTATTTTTCCCTTCCCTGTGCCTTCTACACCACAACCAGTAATTACT] [+] EMBL CB625998 [ TCTGAATGTTGCAATGTTCACATTCAAGACATAAGTTATCTTGAGCATCACATCAAAACAATTAGACAGGTACATAGCTAGAGTTCATTACAAGGTTAGCAGCCTACAATGATCATTACATCAGAGCCTACAACGATCATTACATCAGACAGCACCTGTTCTCTACTCCTTGCTATTCCTGAGCCTGTATGTCAGAAACTACAGCCCTACATCAGAGGACGACCTAGGTCACCTATCCATAATTACAACACATGTAAATACAGATAGATACAGGAGATACATAGATTAGAACGGCCGTTAATCTATGTAAAGTCTCCTCAAAACAGACACCCAAGGCTCAATCAGAGTCACCGTCATGCTCAAGGAAACGATACTCCCTTGGGCCACCAAGCCTTAGTACTATGGTCCCGGCATTTTCCTCATGCCACTCAACGCCTTCCTTCTCCACAAGCTCGGCAACCGCGCGCTTTATTTTTCCCTTCCCTGTGCCTTCTACACCACAACCAGTAATTACT] consensusID : consensus_7786#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 244 fasta sequence [CNNACATGATCATAACATCAGNGCNTACANCGATCATTANNTCAGACNGCACCTGTTTTNTANTCCTTGNTATTCCTGAGCCTGTATGTCAGAAANTACAGCCTTACATCAGAGGACGACNTAGGTCACCTATCCATAATTACAACACATGTNCNTACAGATAGATACAGGAGATACATTGATTAGAACGGCCGTCCNTNTATGTAAAGTCTCCTCAAAACAGACACCCAGGCTCAATCAGAGT] [-] EMBL BE228721 [CNNACATGATCATAACATCAGNGCNTACANCGATCATTANNTCAGACNGCACCTGTTTTNTANTCCTTGNTATTCCTGAGCCTGTATGTCAGAAANTACAGCCTTACATCAGAGGACGACNTAGGTCACCTATCCATAATTACAACACATGTNCNTACAGATAGATACAGGAGATACATTGATTAGAACGGCCGTCCNTNTATGTAAAGTCTCCTCAAAACAGACACCCAGGCTCAATCAGAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7786#1 ----------------------TGTTTCTGATAGTTCCTCTATTAGATCAATTGTCTGAA 38 consensus_7786#2 ------------------------------------------------------------ consensus_7786#0 TTTTTTTTTTCACAGCTAATTTGGTTTCTGATAGTTCCTTTAGTAGATCAATGGTCTGAA 60 consensus_7786#1 TGTTGCAATGTTGA-CATTCAA-GACATAAGTT--ATCTTGAGCATCACATCAAAACAAT 94 consensus_7786#2 ------------------------------------------------------------ consensus_7786#0 TGTTGCAATGTTGAACATTCAAAGACATAAGGTTAATCTTGAGCATCANATCAAAACAAT 120 consensus_7786#1 TAGACAGGTACATAGCTAGAGTTCATTACAAGGTTAGCAGCCTACAATGATCATTACATC 154 consensus_7786#2 ----------------------------------------CNNACA-TGATCATAACATC 19 consensus_7786#0 TAGACAGGTACNTAGCTAGAGTTCATTACAAGGTTAGCAGCCTACAATGATCATTACATC 180 * *** ******* ***** consensus_7786#1 AGAGCCTACAACGATCATTACATCAGACAGCACCTG-TTCTCTACTCCTT-GCTATTCCA 212 consensus_7786#2 AGNGCNTACANCGATCATTANNTCAGACNGCACCTG-TTTTNTANTCCTT-GNTATTCCT 77 consensus_7786#0 AGAGCCTACAACGATCATTACATCAGACAGCACCGGGTTCTCTACTCCTNTGCTATTCCT 240 ** ** **** ********* ****** ***** * ** * ** **** * ****** consensus_7786#1 GAGCCTGTATGTCAGAAACTACAGCCCTACATCAGAGGACGACCTAGGTCACCTATCCAT 272 consensus_7786#2 GAGCCTGTATGTCAGAAANTACAGCCTTACATCAGAGGACGACNTAGGTCACCTATCCAT 137 consensus_7786#0 GAGCCTGTATGTCAGAAACTACAGCCCTACATCAGAGGACGACCTAGGTCACCTATCCAT 300 ****************** ******* **************** **************** consensus_7786#1 AATTACAACACATGTAAATACAGATAGATACAGGAGATACATAGATTAGAACGGCCG-TT 331 consensus_7786#2 AATTACAACACATGTNCNTACAGATAGATACAGGAGATACATTGATTAGAACGGCCG-TC 196 consensus_7786#0 AATTACAACACATGTAAATACAGATAGATACAGGAGATACATAGATTAGAACGGCCGGTT 360 *************** ************************ ************** * consensus_7786#1 AATCTATGTAAAGTCTCCTCAAAACAGACACCCAAGGCTCAATCAGAGTCACTGTCATGC 391 consensus_7786#2 CNTNTATGTAAAGTCTCCTCAAAACAGACACCCA-GGCTCAATCAGAGT----------- 244 consensus_7786#0 AATCTATGTAAAGTCTCCTCAAAACAGACACCCAAGGCTCAATCAGAGTCACTGTCATGC 420 * ****************************** ************** consensus_7786#1 TCAAGGAAACGATACTCCCTTGGGCCACCAAGCCTTAGTACTATGGTCCCGGCATTTTCC 451 consensus_7786#2 ------------------------------------------------------------ consensus_7786#0 TCAAGGAAACGATACTCCCTTGGGCCACCAAGCCTTAGTACTATGGTCCCGGCATTTTCC 480 consensus_7786#1 TCATGCCACTCAACGCCTTCCTTCTCCACAAGCTCGGCAACCGCGCGCTTTATTTTTCCC 511 consensus_7786#2 ------------------------------------------------------------ consensus_7786#0 TCATGCCACTCAACGCCTTCCTTCTCCACAAGCTCGGCAACCTACCACAGCCATTTTTAC 540 consensus_7786#1 T---TCCCTGTGCCTTCTACACCACAACCAGTAATTACT--------------------- 547 consensus_7786#2 ------------------------------------------------------------ consensus_7786#0 AGAATTCAAAAGCATGGTACATTAGGTAATGAGATTGACCAATTAAGAGTACTAGTCTAC 600 consensus_7786#1 ------------------------------------------------------------ consensus_7786#2 ------------------------------------------------------------ consensus_7786#0 AGATTGAAAGAGTAAAGATCAGCAACACAGACACTGTCAAGAGCTGCATGCTAAAAGCAT 660 consensus_7786#1 ------------------------------------------------------------ consensus_7786#2 ------------------------------------------------------------ consensus_7786#0 TCTATTATAGTGGGGCCATATAGCCACCACGAGATAGAAAGTAATATAACACAGGAAGGT 720 consensus_7786#1 ------------------------------------------------------------ consensus_7786#2 ------------------------------------------------------------ consensus_7786#0 ATCAAGGTATTCAACCAAACATTTCATGAGGGCAGCTCAGTTTCAAGAACATGCTGATAA 780 consensus_7786#1 ------------------------------------------------------------ consensus_7786#2 ------------------------------------------------------------ consensus_7786#0 TACTATAAATTTAATGAAGAAACGAAGCATGACAACAAGCAGGCACACATGTGAGGTCCC 840 consensus_7786#1 ------------------------------------------------------------ consensus_7786#2 ------------------------------------------------------------ consensus_7786#0 AGCTTGTCTAAGCAAATACTTACCGCGCGCTTTATTTTTCCCTTCCCTGTGCCTTCTACA 900 consensus_7786#1 --------- consensus_7786#2 --------- consensus_7786#0 CCACAACCA 909 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||