These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7788#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1131 fasta sequence [ACCTTGTAGGGAGTCTTGAAATTGATGTGGTAGGAGGATGGCGTTATATGTTTGGTTTTGGTGCTTCACTGGCAGTAATAATGGCTATTGGTATGTGGAATTTACCGCCTTCACCAAGATGGCTTCTTCTCAGGGCAGTTCAAGGAAAGGCGTCAGTGGAAGATAACAAAAAGAAGGCAATTCAGGCATTGAGATCACTGAGGGGGCGCTTTAGGAGTGACAGGGTCTTAGCAGATGAGATTGATGATACCCTTCTCTCTATTAAGGCTGCTTATGCAGAACAAGAATCTGAAGGGAACATTTGGAAGATGTTTGAGGGAGCTAGCTTGAAGGCACTCATCATTGGAGGAGGACTGGTTCTCTTCCAGCAGATAACAGGCCAGCCAAGTGTTCTATACTATGCAACTTCCATTCTTCAGACTGCTGGGTTTGCAGCTGCATCTGATGCTGCCAAAGTATCAATTTTGATTGGGTTGTTCAAGTTGTTGATGACAGGTGTTGCAGTATTTAAAGTTGACGATCTTGGAAGGCGTCCACTACTTATAGGAGGCATTGGTGGAATAGCTGTTTCACTGTTCTTATTAGCAGCTTACTACAAGATTCTGAACAGCTTCCCTTTTGTCGCT-GTTGGTGCTTTACTTCTGTATGTCGGTTCTTACCAGGTATCGTTTGGTCCAATAAGTTGGCTAATGGTTTCTGAGATCTTCCCACTCCGAACAAGAGGACGT-GGGATCAGCCTTGCAGTACTTACAAATTTCGGCTCAAATGCACTGGTGACATTTGCCTTTTCACCCTTGCAGGAATTCCTTGGACCAGCCAATATTTTCCTTCTATTTGGAGCCATATCGTTGCTCTCCCTTGTGTTTGTCATCCTAAAAGTTCCAGAGACTAAAGGACTTACATTGGAGGAGATCGAATCCAAGCTCCTGAAGTAAGCTCACT-GGTACTCAAGTTGTATG--TGTGTGTGTG-TTTTTTTTGAGGGCAAGTTGCTATGTGTTCATTAGATGAGGTTGATACGTGTCGGTGTAAATTTGTTCAGTCGATTTATGTGATTAATATAGTCGTACATGTAGTATTTTGTACATGTAAATTCTTGTTTGGACTAAAAATATTCTAGAGAAATCCAAAAAA] [+] EMBL CA764987 [ACCTTGTAGGGAGTCTTGAAATTGATGTGGTAGGAGGATGGCGTTATATGTTTGGTTTTGGTGCTTCACTGGCAGTAATAATGGCTATTGGTATGTGGAATTTACCGCCTTCACCAAGATGGCTTCTTCTCAGGGCAGTTCAAGGAAAGGCGTCAGTGGAAGATAACAAAAAGAAGGCAATTCAGGCATTGAGATCACTGAGGGGGCGCTTTAGGAGTGACAGGGTCTTAGCAGATGAGATTGATGATACCCTTCTCTCTATTAAGGCTGCTTATGCAGAACAAGAATCTGAAGGGAACATTTGGAAGATGTTTGAGGGAGCTAGCTTGAAGGCACTCATCATTGGAGGAGGACTGGTTCTCTTCCAGCAGATAACAGGCCAGCCAAGTGTTCTATACTATGCAACTTCCATTCTTCAGACTGCTGGGTTTGCAGCTGCATCTGATGCTGCCAAAGTATCAATTTTGATTGGGTTGTTCAAGTTGTTGATGACAGGTGTTGCAGTATTTAAAGTTGACGATCTTGGAAGGCGTCCACTACTTATAGGAGGCATTGGTGGAATAGCTGTTTCACTGTTCTTATTAGCAGCTTACTACAAGATTCTGAACAGCTTCCCTTTTGTCGCTGGTTGGTGCTTTACTTCTGTATGTCGGTTCTTACCAGGTATCGTTTGGTCCAATAAGNTGGCTAATGGTTTCTGAGATCNTTCCACTCCGAACAAGANGACGTNGGGATCAGCCNTGCAGTACTTACAAATTTCGGCTCAAATGCNCTGGTGACATTTGCCTTTTCACCCT ] [+] EMBL AK103844 [ GGAGGATGGCGTTATATGTTTGGTTTTGGTGCTCCACTGGCAGTAATAATGGCTATTGGTATGTGGAATTTACCGCCTTCACCAAGATGGCTTCTTCTCAGGGCAGTTCAAGGAAAGGCGTCAGTGGAAGATAACAAAAAGAAGGCAATTCAGGCATTGAGATCACTGAGGGGGCGCTTTAGGAGTGACAGGGTCTTAGCAGATGAGATTGATGATACCCTTCTCTCTATTAAGGCTGCTTATGCAGAACAAGAATCTGAAGGGAACATTTGGAAGATGTTTGAGGGAGCTAGCTTGAAGGCACTCATCATTGGAGGAGGACTGGTTCTCTTCCAGCAGATAACAGGCCAGCCAAGTGTTCTATACTATGCAACTTCCATTCTTCAGACTGCTGGGTTTGCAGCTGCATCTGATGCTGCCAAAGTATCAATTTTGATTGGGTTGTTCAAGTTGTTGATGACAGGTGTTGCAGTATTTAAAGTTGACGATCTTGGAAGGCGTCCACTACTTATAGGAGGCATTGGTGGAATAGCTGTTTCACTGTTCTTATTAGCAGCTTACTACAAGATTCTGAACAGCTTCCCTTTTGTCGCT GTTGGTGCTTTACTTCTGTATGTCGGTTCTTACCAGGTATCGTTTGGTCCAATAAGTTGGCTAATGGTTTCTGAGATCTTCCCACTCCGAACAAGAGGACGT GGGATCAGCCTTGCAGTACTTACAAATTTCGGCTCAAATGCACTGGTGACATTTGCCTTTTCACCCTTGCAGGAATTCCTTGGACCAGCCAATATTTTCCTTCTATTTGGAGCCATATCGTTGCTCTCCCTTGTGTTTGTCATCCTAAAAGTTCCAGAGACTAAAGGACTTACATTGGAGGAGATCGAATCCAAGCTCCTGAAGTAAGCTCACT GGTACTCAAGTTGTATG TGTGTGTGTG TTTTTTTTGAGGGCAAGTTGCTATGTGTTCATTAGATGAGGTTGATACGTGTCGGTGTAAATTTGTTCAGTCGATTTATGTGATTAATATAGTCGTACATGTAGTATTTTGTACATGTAAATTCTTGTTTGGACTAAAAATATTCTAGAGAAATCCAAAAAA] [+] EMBL CA755897 [ CCAAGTGTTCTATACTATGCAACTTCCATTCTTCAGACTGCTGGGTTTGCAGCTGCATCTGATGCTGCCAAAGTATCAATTTTGATTGGGTTGTTCAAGTTGTTGATGACAGGTGTTGCAGTATTTAAAGTTGACGATCTTGGAAGGCGTCCACTACTTATAGGAGGCATTGGTGGAATAGCTGTTTCACTGTTCTTATTAGCAGCTTACTACAAGATTCTGAACAGCTTCCCTTTTGTCGCT GTTGGTGCTTTACTTCTGTATGTCGGTTCTTACCAGGTATCGTTTGGTCCAATAAGTTGGCTAATGGTTTCTGAGATCTTCCCACTCCGAACAAGAGGACGT GGGATCAGCCTTGCAGTACTTACAAATTTCGGCTCANATGCACTGGTGACATTTGCCTTTTCACCCTTGCAGGAATTCCTTGGACCAGCCAATATTTTCCTTCTATTTGGAGCCATATCGTTGCTCTCCCTTGTGTTTGTCATCCTAAAAGTTCCAGAGACTAAAGGACTTACATTGGAGGAGATCGAATCCNAGCTCCTGAAGTAAGCTCACTGGGTACTC AGTTGTATGNNTGTGTGTGTGTTTTTTTTTGAGGGCAAGT ] consensusID : consensus_7788#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [GGAACTTTGTCAGTGGAAGATAACAAAAAGAAGGCAATTCAGGCATTGAGATCACTGAGGGGGCGCTTTAGGAGTGACAGGGTCTTAGCAGATGAGATTGATGATACCCTTCTCTCTATTAAGGCTGCTTATGCAGAACAAGAATCTGAAGGGAACATTTGGAAGATGTTTGAGGGAGCTAGCTTGAAGGCACTCATCATTGGAGGAGGACTGGTTCTCTTCCAGCAGGTTTTTGTCCTCATCAGCCCACTTGGAAGCAACACATCTAAATATGAAATCTGACCGTGCTTTGATCATCCTTTTAAATTTGAAATTATGTGCCCTAAATTTCAGTGAAAGTTATTATGTCCAAGTTGAGGTAGAAAAAGAAGAAAGATAATGACCTGTCTATTCATTTCATCCTGCTTTGGTCATTTCTTGATTTTTTAATAGTTGACTAATGTTACTTCTTTGTTATATGGAACTAAAGCACTGATATTAATTAAACTATTATTTCAGATAACAGGCCAGCCAAGTGTTCTATACTATGCAACTTCCATTCTTCAGGTACCTCTGAGTTTCTTTTCATACAAGGACAGACAGAATAAGACTTAGTTCTCCATATGGCTGTGTGCCCTGATACATACAATTAAATCCATTCTATCCTCAACAGACTGCTGGGTTTGCACCTGCATCTGATGCTGCCCAAATATCAATT] [+] EMBL CB631981 [GGAACTTTGTCAGTGGAAGATAACAAAAAGAAGGCAATTCAGGCATTGAGATCACTGAGGGGGCGCTTTAGGAGTGACAGGGTCTTAGCAGATGAGATTGATGATACCCTTCTCTCTATTAAGGCTGCTTATGCAGAACAAGAATCTGAAGGGAACATTTGGAAGATGTTTGAGGGAGCTAGCTTGAAGGCACTCATCATTGGAGGAGGACTGGTTCTCTTCCAGCAGGTTTTTGTCCTCATCAGCCCACTTGGAAGCAACACATCTAAATATGAAATCTGACCGTGCTTTGATCATCCTTTTAAATTTGAAATTATGTGCCCTAAATTTCAGTGAAAGTTATTATGTCCAAGTTGAGGTAGAAAAAGAAGAAAGATAATGACCTGTCTATTCATTTCATCCTGCTTTGGTCATTTCTTGATTTTTTAATAGTTGACTAATGTTACTTCTTTGTTATATGGAACTAAAGCACTGATATTAATTAAACTATTATTTCAGATAACAGGCCAGCCAAGTGTTCTATACTATGCAACTTCCATTCTTCAGGTACCTCTGAGTTTCTTTTCATACAAGGACAGACAGAATAAGACTTAGTTCTCCATATGGCTGTGTGCCCTGATACATACAATTAAATCCATTCTATCCTCAACAGACTGCTGGGTTTGCACCTGCATCTGATGCTGCCCAAATATCAATT] consensusID : consensus_7788#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [CAGGTATCGTTTGGTCCAATAAGTTGGCTAATGGTTTNTGAGATCTTCCCACTCCGAACAAGAGGACGTGGGATCAGCCTTGCAGTACTTACAAATTTCGGCTCAAATGCACTGGTGACATTTGCCTTTTCACCCTTGCAGGAATTCCTTGGACCAGCCAATATTTTCCTTCTATTTGGAGCCATATCGTTGCTCTCCCTTGTGTTTGTCATCCTAAAAGTTCCAGAGACTAAAGGACTTACATTGGAGGAGATCGAATCCAAGCTCCTGAAGTAAGCTCACTGGTACTCAAGTTGTATGTGTGTGTGTGTTTTTTTTGAGGGCAAGTTGCTATGTGTTCATTAGATGAGGTTGATACGTGTCGGTGTAAATTTGTTCAGTCGATTTATGTGATTAATATAGTCGTACATGTAGTATTTTGTAAAAAAAAAAAAAA] [+] EMBL AU173874 [CAGGTATCGTTTGGTCCAATAAGTTGGCTAATGGTTTNTGAGATCTTCCCACTCCGAACAAGAGGACGTGGGATCAGCCTTGCAGTACTTACAAATTTCGGCTCAAATGCACTGGTGACATTTGCCTTTTCACCCTTGCAGGAATTCCTTGGACCAGCCAATATTTTCCTTCTATTTGGAGCCATATCGTTGCTCTCCCTTGTGTTTGTCATCCTAAAAGTTCCAGAGACTAAAGGACTTACATTGGAGGAGATCGAATCCAAGCTCCTGAAGTAAGCTCACTGGTACTCAAGTTGTATGTGTGTGTGTGTTTTTTTTGAGGGCAAGTTGCTATGTGTTCATTAGATGAGGTTGATACGTGTCGGTGTAAATTTGTTCAGTCGATTTATGTGATTAATATAGTCGTACATGTAGTATTTTGTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7788#0 ACCTTGTAGGGAGTCTTGAAATTGATGTGGTAGGAGGATGGCGTTATATGTTTGGTTTTG 60 consensus_7788#2 ------------------------------------------------------------ consensus_7788#1 ------------------------------------------------------------ consensus_7788#0 GTGCTTCACTGGCAGTAATAATGGCTATTGGTATGTGGAATTTACCGCCTTCACCAAGAT 120 consensus_7788#2 ------------------------------------------------------------ consensus_7788#1 ------------------------------------------------------------ consensus_7788#0 GGCTTCTTCTCAGGGCAGTTCAAGGAAAGGCGTCAGTGGAAGATAACAAAAAGAAGGCAA 180 consensus_7788#2 ------------------------------------------------------------ consensus_7788#1 ------------------------------------------------------------ consensus_7788#0 TTCAGGCATTGAGATCACTGAGGGGGCGCTTTAGGAGTGACAGGGTCTTAGCAGATGAGA 240 consensus_7788#2 ------------------------------------------------------------ consensus_7788#1 ------------------------------------------------------------ consensus_7788#0 TTGATGATACCCTTCTCTCTATTAAGGCTGCTTATGCAGAACAAGAATCTGAAGGGAACA 300 consensus_7788#2 ------------------------------------------------------------ consensus_7788#1 ------------------------------------------------------------ consensus_7788#0 TTTGGAAGATGTTTGAGGGAGCTAGCTTGAAGGCACTCATCATTGGAGGAGGACTGGTTC 360 consensus_7788#2 ------------------------------------------------------------ consensus_7788#1 ------------------------------------------------------------ consensus_7788#0 TCTTCCAGCAGATAACAGGCCAGCCAAGTGTTCTATACTATGCAACTTCCATTCTTCAGA 420 consensus_7788#2 ------------------------------------------------------------ consensus_7788#1 ------------------------------------------------GGAACTTTGTCA 12 consensus_7788#0 CTGCTGGGTTTGCAGCTGCATCTGATGCTGCCAAAGTATCAATTTTGATTGGGTTGTTCA 480 consensus_7788#2 ------------------------------------------------------------ consensus_7788#1 GTGGAAGATAACAAAAAGAAGGCAATTCAGGCATTGAGATCACTGAGGGGGCGCTTTAGG 72 consensus_7788#0 AGTTGTTGATGACAGGTGTTGCAGTATTTAAAGTTGACGATCTTGGAAGGCGTCCACTAC 540 consensus_7788#2 ------------------------------------------------------------ consensus_7788#1 AGTGACAGGGTCTTAGCAGATGAGATTGATGATACCCTTCTCTCTATTAAGGCTGCTTAT 132 consensus_7788#0 TTATAGGAGGCATTGGTGGAATAGCTGTTTCACTGTTCTTATTAGCAGCTTACTACAAGA 600 consensus_7788#2 ------------------------------------------------------------ consensus_7788#1 GCAGAACAAGAATCTGAAGGGAACATTTGGAAGATGTTTGAGGGAGCTAGCTTGAAGGCA 192 consensus_7788#0 TTCTGAACAGCTTCCCTTTTGTCGCTGTTGGTGCTTTACTTCTGTATGTCGGTTCTTACC 660 consensus_7788#2 -----------------------------------------------------------C 1 consensus_7788#1 CTCATCATTGGAGGAGGACTGGTTCTCTTCCAGCAGGTTTTTGTCCTCATCAGCCCACTT 252 consensus_7788#0 AGGTATCGTTTGGTCCAATAAGTTGGCTAATGGTTTCTGAGATCTTCCCACTCCGAACAA 720 consensus_7788#2 AGGTATCGTTTGGTCCAATAAGTTGGCTAATGGTTTNTGAGATCTTCCCACTCCGAACAA 61 consensus_7788#1 GGAAGCAACACATCTAAATATGAAATCTGACCGTGCTTT-GATCATCCTTTTAAATTTGA 311 * **** * ** * ** * **** *** * * consensus_7788#0 GAGGACGTGGGATCAGCCTTG--------CAGTACTTACAAATTTCGGCTCAAATGCACT 772 consensus_7788#2 GAGGACGTGGGATCAGCCTTG--------CAGTACTTACAAATTTCGGCTCAAATGCACT 113 consensus_7788#1 AATTATGTGCCCTAAATTTCAGTGAAAGTTATTATGTCCAAGTTGAGGTAGAAAAAGAAG 371 * * *** * * * * ** * *** ** ** *** * consensus_7788#0 GGTGACATTTGCCTTTTCACCCTTGCAGGAATTCCTTGGACCAGCCAATATTTTCCTTCT 832 consensus_7788#2 GGTGACATTTGCCTTTTCACCCTTGCAGGAATTCCTTGGACCAGCCAATATTTTCCTTCT 173 consensus_7788#1 AAAGATAATGACCTGTCTATTCATTTCATCCTGCTTTGG-TCATTTCTTGATTTTTTAAT 430 ** * * *** * * * * * * **** ** * *** * * consensus_7788#0 ATTTGGAGCCATATCGTTGCTCTCCCTTGTGTTTGTCATCCTAAAAGTTCCAGAGACTAA 892 consensus_7788#2 ATTTGGAGCCATATCGTTGCTCTCCCTTGTGTTTGTCATCCTAAAAGTTCCAGAGACTAA 233 consensus_7788#1 AGTTGAC----TAATGTTACT-TCTTTGTTATATGGAACTAAAGCACTGATATTAATTAA 485 * *** ** *** ** ** * * * ** * * * * * * *** consensus_7788#0 AGGACTTACATTGGAGGAGATCGAATCCAAGC-TCCTGAAGTAAGCTCACTGGTACTCAA 951 consensus_7788#2 AGGACTTACATTGGAGGAGATCGAATCCAAGC-TCCTGAAGTAAGCTCACTGGTACTCAA 292 consensus_7788#1 ACTA-TTATTTCAGATAACAGGCCAGCCAAGTGTTCTATACTATGCA-ACTTCCATTCTT 543 * * *** * ** * * * ***** * ** * ** ** *** * ** consensus_7788#0 GTTGTATGTGTGTGTGTGTTTTTTTTGAGGGCAAGTTGCTATGTG-TTCATTAGATGAGG 1010 consensus_7788#2 GTTGTATGTGTGTGTGTGTTTTTTTTGAGGGCAAGTTGCTATGTG-TTCATTAGATGAGG 351 consensus_7788#1 CAGGTACCTCTGAGTTTCTTTTCATACAAGGACAGACAGAATAAGACTTAGTTCTCCATA 603 *** * ** ** * **** * * ** ** ** * * * * * consensus_7788#0 TTGATACGTGTCGGTGTAAATTTGTTCAGTCGATTTATGTGATTAATATA--GTCGTACA 1068 consensus_7788#2 TTGATACGTGTCGGTGTAAATTTGTTCAGTCGATTTATGTGATTAATATA--GTCGTACA 409 consensus_7788#1 TGGCTGTGTGCCCTGATACATACAATTAAATCCATTCTATCCTCAACAGACTGCTGGGTT 663 * * * *** * ** ** * * ** * * * ** * * * * consensus_7788#0 TGTA---GTATTTTGTACATGTAAATTCTTGTTTGGACTAAAAATATTCTAGAGAAATCC 1125 consensus_7788#2 TGTA---GTATTTTGTAAAAAAAAAAAAAA------------------------------ 436 consensus_7788#1 TGCACCTGCATCTGATGCTGCCCAAATATCAATT-------------------------- 697 ** * * ** * * ** consensus_7788#0 AAAAAA 1131 consensus_7788#2 ------ consensus_7788#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||