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Oryza sativa
cluster # 7797 cluster # 7797       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7797#0 length = 1999 sequences # 5  

consensusID : consensus_7797#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1999
fasta sequence
                              [TTCCGGGCGATATCCGGGGCGGCGCTCAGTGCCAACGTATCCACGCCGCTGTCCACGTCCGTGCTGCTGCTGATGCCGGAGGAGTCGTCGGCGTCCGCCACCGCGTCGTCGGGGTTTGAGAGCTCGGAGTCGTTCGCTGCTGTGCCGCTGCAGCCGGTGCCGAGGTTCTCGTCCGGGCCGATCTCCGCGCCCTTCTCCGGCGGGTTCATGTCGGGGCCCTTGGAGAGGGGGTTCCAATCTGGGCCACTCGACGCCGCGCTCCTCTCGGGCCCTCTCCCTGGCACCGCCACCTCCGGTCGTATGGGTGGCGCCGTCCCTGCGCTCCGCCGGAGCCTCTCCCACGGTGGCCGCCGCCTCCGCAATTTCACCCGCGCGCTCCTCGCGCGCACCGAGAAGTTTCAGGATTCTGCGGATCTAGGCTCGCCGGACGCCGCCGCCGCCGCCGTCGCCGCCTGTGGGGGCGATCCCTGTGGTCTGCAGTGGGCGCAGGGGAAAGCCGGCGAGGACCGCGTCCACGTCGTCGTGTCGGAGGAGCGAGGCTGGGTGTTCGTCGGCATCTACGATGGGTTCAACGGCCCCGACGCCACCGACTTCCTGGTATCCAACCTCTACGCCGCCGTCCACCGCGAGCTCCGCGGCCTCCTCTGGGATCAGCGGGAGCAGAACGTGCAGCACGACCAGCGCCCCGACCAACCCGGCTCAGCCCCAAGCACCACGGCCTCAGATAACCAAGACCAGTGGGGTCGCCGCCGCCGCACCCGCCGCTCAAGACCGCCGCGTGGCGCCGACGACGACCAGCGGCGGTGGAAGTGCGAGTGGGAGCAGGAGCGGGATTGCTCCAACCTGAAGCCACCAACGCAGCAGCGTCTTCGTTGCAACAGCGAGAACGACCACGTCGCCGTGCTCAAGGCGCTGACCCGTGCGCTGCACAGGACCGAGGAGGCTTACCTGGACATCGCCGACAAGATGGTCGGCGAGTTCACTGAGCTTGCGCTCATGGGCTCTTGTGTTCTTGCCATGCTCATGAAAGGAGAGGACATGTACATCATGAATGTTGGCGATAGCCGGGCTGTGTTGGCAACAATGGACAGCGTCGATCTCGAGCAGATCAGCCAGGGTTCATTCGATGGATCAGTCGGGGATTGCCCGCCATGCTTGTCGGCCGTGCAGCTCACGTCGGATCACAGCACTTCAGTGGAAGAGGAAGTAATCAGAATACGAAACGAGCATCCTGATGATCCATCTGCCATCTCCAAGGATCGCGTGAAGGGCTCGCTGAAGGTGACCAGAGCATTTGGTGCTGGGTTTTTGAAACAGCCCAAGTGGAATGATGCACTCCTGGAGATGTTCAGAATTGATTACGTTGGGTCCTCCCCATACATATCATGCAATCCATCCCTTTTTCATCATAAGCTCAGCACAAGGGATAGATTCTTGATATTATCTTCAGATGGACTTTACCAGTATTTCACCAACGAGGAGGCAGTTGCTCAGGTCGAAATGTTCATCGCAACAACCCCTGAAGGCGACCCTGCCCAACATCTTGTGGAGGAAGTTCTTTTCCGTGCTGCCAACAAAGCAGGAATGGACTTTCATGAACTGATCGAGATACCACATGG-TGATCGTCGGCGATACCATGACGATGTATCTGTCATCGTCATCTCTTTGGAGGGCAGGA-TTTGGAG-ATCCTGCGTGTAAATAGAAACAATAGTAGGCTAGTGAAACAAAACGTATAGA---GGGGGTTCTTCCCATGCCTTCCTTGAGCTGAGA--GGTGTTCTTGCGGCTACTCTACTCCTCTTCCCCCAGTTGCTACTGTACAATATCAACCAAGCACTGTGGGGGGTTGGATTCGGCTTGGGCTCTCGGCACATCCAGCTGAATCGCCATGAATCGCCCGCAGGGCTGGCCGCGTGGTATAATATG-TTGATGTAAATGAGGATTTGTTCAATTATTAATAATTTATAAAATCGACCAATTGGTCAACTTTCTTTGACAAAAA]

[+] EMBL AK071722             [TTCCGGGCGATATCCGGGGCGGCGCTCAGTGCCAACGTATCCACGCCGCTGTCCACGTCCGTGCTGCTGCTGATGCCGGAGGAGTCGTCGGCGTCCGCCACCGCGTCGTCGGGGTTTGAGAGCTCGGAGTCGTTCGCTGCTGTGCCGCTGCAGCCGGTGCCGAGGTTCTCGTCCGGGCCGATCTCCGCGCCCTTCTCCGGCGGGTTCATGTCGGGGCCCTTGGAGAGGGGGTTCCAATCTGGGCCACTCGACGCCGCGCTCCTCTCGGGCCCTCTCCCTGGCACCGCCACCTCCGGTCGTATGGGTGGCGCCGTCCCTGCGCTCCGCCGGAGCCTCTCCCACGGTGGCCGCCGCCTCCGCAATTTCACCCGCGCGCTCCTCGCGCGCACCGAGAAGTTTCAGGATTCTGCGGATCTAGGCTCGCCGGACGCCGCCGCCGCCGCCGTCGCCGCCTGTGGGGGCGATCCCTGTGGTCTGCAGTGGGCGCAGGGGAAAGCCGGCGAGGACCGCGTCCACGTCGTCGTGTCGGAGGAGCGAGGCTGGGTGTTCGTCGGCATCTACGATGGGTTCAACGGCCCCGACGCCACCGACTTCCTGGTATCCAACCTCTACGCCGCCGTCCACCGCGAGCTCCGCGGCCTCCTCTGGGATCAGCGGGAGCAGAACGTGCAGCACGACCAGCGCCCCGACCAACCCGGCTCAGCCCCAAGCACCACGGCCTCAGATAACCAAGACCAGTGGGGTCGCCGCCGCCGCACCCGCCGCTCAAGACCGCCGCGTGGCGCCGACGACGACCAGCGGCGGTGGAAGTGCGAGTGGGAGCAGGAGCGGGATTGCTCCAACCTGAAGCCACCAACGCAGCAGCGTCTTCGTTGCAACAGCGAGAACGACCACGTCGCCGTGCTCAAGGCGCTGACCCGTGCGCTGCACAGGACCGAGGAGGCTTACCTGGACATCGCCGACAAGATGGTCGGCGAGTTCACTGAGCTTGCGCTCATGGGCTCTTGTGTTCTTGCCATGCTCATGAAAGGAGAGGACATGTACATCATGAATGTTGGCGATAGCCGGGCTGTGTTGGCAACAATGGACAGCGTCGATCTCGAGCAGATCAGCCAGGGTTCATTCGATGGATCAGTCGGGGATTGCCCGCCATGCTTGTCGGCCGTGCAGCTCACGTCGGATCACAGCACTTCAGTGGAAGAGGAAGTAATCAGAATACGAAACGAGCATCCTGATGATCCATCTGCCATCTCCAAGGATCGCGTGAAGGGCTCGCTGAAGGTGACCAGAGCATTTGGTGCTGGGTTTTTGAAACAGCCCAAGTGGAATGATGCACTCCTGGAGATGTTCAGAATTGATTACGTTGGGTCCTCCCCATACATATCATGCAATCCATCCCTTTTTCATCATAAGCTCAGCACAAGGGATAGATTCTTGATATTATCTTCAGATGGACTTTACCAGTATTTCACCAACGAGGAGGCAGTTGCTCAGGTCGAAATGTTCATCGCAACAACCCCTGAAGGCGACCCTGCCCAACATCTTGTGGAGGAAGTTCTTTTCCGTGCTGCCAACAAAGCAGGAATGGACTTTCATGAACTGATCGAGATACCACATGG TGATCGTCGGCGATACCATGACGATGTATCTGTCATCGTCATCTCTTTGGAGGGCAGGA TTTGGAG ATCCTGCGTGTAAATAGAAACAATAGTAGGCTAGTGAAACAAAACGTATAGA   GGGGGTTCTTCCCATGCCTTCCTTGAGCTGAGA  GGTGTTCTTGCGGCTACTCTACTCCTCTTCCCCCAGTTGCTACTGTACAATATCAACCAAGCACTGTGGGGGGTTGGATTCGGCTTGGGCTCTCGGCACATCCAGCTGAATCGCCATGAATCGCCCGCAGGGCTGGCCGCGTGGTATAATATG TTGATGTAAATGAGGATTTGTTCAATTATTAATAATTTAT                                    ]
[+] EMBL AK073306             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGAGGCTTACCTGGACATCGCCGACAAGATGGTCGGCGAGTTCCCTGAGCTTGCGCTCATGGGCTCTTGTGTTCTTGCCATGCTCATGAAAGGAGAGGACATGTACATCATGAATGTTGGCGATAGCCGGGCTGTGTTGGCAACAATGGACAGCGTCGATCTCGAGCAGATCAGCCAGGGTTCATTCGATGGATCAGTCGGGGATTGCCCGCCATGCTTGTCGGCCGTGCAGCTCACGTCGGATCACAGCACTTCAGTGGAAGAGGAAGTAATCAGAATACGAAACGAGCATCCTGATGATCCATCTGCCATCTCCAAGGATCGCGTGAAGGGCTCGCTGAAGGTGACCAGAGCATTTGGTGCTGGGTTTTTGAAACAGTCCAAGTGGAATGATGCACTCCTGGAGATGTTCAGAATTGATTACGTTGGGTCCTCCCCATACATATCATGCAATCCATCCCTTTTTCATCATAAGCTCAGCACAAGGGATAGATTCTTGATATTATCTTCAGATGGACTTTACCAGTATTTCACCAACGAGGAGGCAGTTGCTCAGGTCGAAATGTTCATCGCAACAACCCCTGAAGGCGACCCTGCCCAACATCTTGTGGAGGAAGTTCTTTTCCGTGCTGCCAACAAAGCAGGAATGGACTTTCATGAACTGATCGAGATACCACATGG TGATCGTCGGCGATACCATGACGATGTATCTGTCATCGTCATCTCTTTGGAGGGCAGGA TTTGGAG ATCCTGCGTGTAAATAGAAACAATAGTAGGCTAGTGAAACAAAACGTATAGA   GGGGGTTCTTCCCATGCCTTCCTTGAGCTGAGA  GGTGTTCTTGCGGCTACTCTACTCCTCTTCCCCCAGTTGCTACTGTACAATATCAACCAAGCACTGTGGGGGGTTGGATTCG    GGGCTCTCGGCACATCCAGCTGAATCGCCATGAATCGCCCGCAGGGCTGGCCGCGTGGTATAATATG TTGATGTAAATGAGGATTTGTTCAATTATTAATAATTTATAAAATCGACCAATTGGTCA                 ]
[+] EMBL CF324133             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GAAGAGGAAGTAATCAGAATACGAAACGAGCATCCTGATGATCCATCTGCCATCTCCAAGGATCGCGTGAAGGGCTCGCTGAAGGTGACCAGAGCATTTGGTGCTGGGTTTTTGAAACAGCCCAAGTGGAATGATGCACTCCTGGAGATGTTCAGAATTGATTACGTTGGGTCCTCCCCATACATATCATGCAATCCATCCCTTTTTCATCATAAGCTCAGCACAAGGGATAGATTCTTGATATTATCTTCAGATGGACTTTACCAGTATTTCACCAACGAGGAGGCAGTTGCTCAGGTCGAAATGTTCATCGCAACAACCCCTGAAGGCGACCCTGCCCAACATCTTGTGGAGGAAGTTCTTTTCCGTGCTGCCAACAAAGCAGGAATGGACTTTCATGAACTGATCGAGATACCACATGGNTGATCGTCGGCGATACCATGACGATGTATCTGTCATCGTCATCTCTTTGGAGGGCAGGATTTTGGAGAATCCTGCGTGTAAATAGAAACAATAGTAGGCTAGTGAAACAAAACG ATAGAAAGGGGGGTTCTTCCCATGCCTTCCTTGA CTGAAAAGGGTG TCTTGCGGCTACTCTACTCCTCTTCCCCCAGTTGCTACT                                                                                                                                                                                          ]
[-] EMBL CB657199             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CGTGAAGGGCTCGCTGAAGGTGACCAGAGCATTTGGTGCTGGGTTTTTGAAACAGCCCAAGTGGAATGATGCACTCCTGGAGATGTTCAGAATTGATTACGTTGGGTCCTCCCCATACATATCATGCAATCCATCCCTTTTTCATCATAAGCTCAGCACAAGGGATAGATTCTTGATATTATCTTCAGATGGACTTTACCAGTATTTCACCAACGAGGAGGCAGTTGCTCAGGTCGAAATGTTCATCGCAACAACCCCTGAAGGCGACCCTGCCCAACATCTTGTGGAGGAAGTTCTTTTCCGTGCTGCCAACAAAGCAGGAATGGACTTTCATGAACTGATCGAGATACCACATGG TGATCGTCGGCGATACCATGACGATGTATCTGTCATCGTCATCTCTTTGGAGGGCAGGA TTTGGAG ATCCTGCGTGTAAATAGAAACAATAGTAGGCTAGTGAAACAAAACGTATAGA   GGGGGTTCTTCCCATGCCTTCCTTGAGCTGAGA  GGTGTTCTTGCGGCTACTCTACTCCTCTTCCCCCAGTTGCTACTGTACAATATCAACCAAGCACTGTGGGGGGTTGGATTCGGCTTGGGCTCTCGGCACATCCAGCTGAATCGCCATGAATCGCCCGCAGGGCTGGCCGCGTGGTATAATATG TTGATGTAAATGAGGATTTGTTCAATTATTAATAATTTATAAAATCGACCAATTGGTCAACT              ]
[+] EMBL BM420818             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGGAGGAAGTTCTTTTCCGTGCTGCCAACAAAGCAGGAATGGACTTTCATGAACTGATCGAGATACCACATGG TGATCGTCGGCGATACCATGACGATGTATCTGTCATCGTCATCTCTTTGGAGGGCAGGA TTTGGAG ATCCTGCGTGTAAATAGAAACAATAGTAGGCTAGTGAAAC AAACGTATAGA   GGGGGTTCTTCCCATGCCTTCCTTGAGCTGAGA  GGTGTTCTTGCGGCTACTCTACTCCTCTTCCCCCAGTTGCTACTGTAC ATATCAACCAAGCACTGTGGGGGGTTGGATTCGGCTTGGGCTCTCGGCACATCCAGCTGAATCGCCATGAATCGCCCGCAGGGCT GCCGCGTGGTATAATATGTTTGATGTAAATGAGGATTTGTTCAATTATTAATAATTTATAAAATCGACCCATTGGTCAACTTTCTTTGACAAAAA]


>consensus_7797#0 TTCCGGGCGATATCCGGGGCGGCGCTCAGTGCCAACGTATCCACGCCGCTGTCCACGTCC GTGCTGCTGCTGATGCCGGAGGAGTCGTCGGCGTCCGCCACCGCGTCGTCGGGGTTTGAG AGCTCGGAGTCGTTCGCTGCTGTGCCGCTGCAGCCGGTGCCGAGGTTCTCGTCCGGGCCG ATCTCCGCGCCCTTCTCCGGCGGGTTCATGTCGGGGCCCTTGGAGAGGGGGTTCCAATCT GGGCCACTCGACGCCGCGCTCCTCTCGGGCCCTCTCCCTGGCACCGCCACCTCCGGTCGT ATGGGTGGCGCCGTCCCTGCGCTCCGCCGGAGCCTCTCCCACGGTGGCCGCCGCCTCCGC AATTTCACCCGCGCGCTCCTCGCGCGCACCGAGAAGTTTCAGGATTCTGCGGATCTAGGC TCGCCGGACGCCGCCGCCGCCGCCGTCGCCGCCTGTGGGGGCGATCCCTGTGGTCTGCAG TGGGCGCAGGGGAAAGCCGGCGAGGACCGCGTCCACGTCGTCGTGTCGGAGGAGCGAGGC TGGGTGTTCGTCGGCATCTACGATGGGTTCAACGGCCCCGACGCCACCGACTTCCTGGTA TCCAACCTCTACGCCGCCGTCCACCGCGAGCTCCGCGGCCTCCTCTGGGATCAGCGGGAG CAGAACGTGCAGCACGACCAGCGCCCCGACCAACCCGGCTCAGCCCCAAGCACCACGGCC TCAGATAACCAAGACCAGTGGGGTCGCCGCCGCCGCACCCGCCGCTCAAGACCGCCGCGT GGCGCCGACGACGACCAGCGGCGGTGGAAGTGCGAGTGGGAGCAGGAGCGGGATTGCTCC AACCTGAAGCCACCAACGCAGCAGCGTCTTCGTTGCAACAGCGAGAACGACCACGTCGCC GTGCTCAAGGCGCTGACCCGTGCGCTGCACAGGACCGAGGAGGCTTACCTGGACATCGCC GACAAGATGGTCGGCGAGTTCACTGAGCTTGCGCTCATGGGCTCTTGTGTTCTTGCCATG CTCATGAAAGGAGAGGACATGTACATCATGAATGTTGGCGATAGCCGGGCTGTGTTGGCA ACAATGGACAGCGTCGATCTCGAGCAGATCAGCCAGGGTTCATTCGATGGATCAGTCGGG GATTGCCCGCCATGCTTGTCGGCCGTGCAGCTCACGTCGGATCACAGCACTTCAGTGGAA GAGGAAGTAATCAGAATACGAAACGAGCATCCTGATGATCCATCTGCCATCTCCAAGGAT CGCGTGAAGGGCTCGCTGAAGGTGACCAGAGCATTTGGTGCTGGGTTTTTGAAACAGCCC AAGTGGAATGATGCACTCCTGGAGATGTTCAGAATTGATTACGTTGGGTCCTCCCCATAC ATATCATGCAATCCATCCCTTTTTCATCATAAGCTCAGCACAAGGGATAGATTCTTGATA TTATCTTCAGATGGACTTTACCAGTATTTCACCAACGAGGAGGCAGTTGCTCAGGTCGAA ATGTTCATCGCAACAACCCCTGAAGGCGACCCTGCCCAACATCTTGTGGAGGAAGTTCTT TTCCGTGCTGCCAACAAAGCAGGAATGGACTTTCATGAACTGATCGAGATACCACATGGT GATCGTCGGCGATACCATGACGATGTATCTGTCATCGTCATCTCTTTGGAGGGCAGGATT TGGAGATCCTGCGTGTAAATAGAAACAATAGTAGGCTAGTGAAACAAAACGTATAGAGGG GGTTCTTCCCATGCCTTCCTTGAGCTGAGAGGTGTTCTTGCGGCTACTCTACTCCTCTTC CCCCAGTTGCTACTGTACAATATCAACCAAGCACTGTGGGGGGTTGGATTCGGCTTGGGC TCTCGGCACATCCAGCTGAATCGCCATGAATCGCCCGCAGGGCTGGCCGCGTGGTATAAT ATGTTGATGTAAATGAGGATTTGTTCAATTATTAATAATTTATAAAATCGACCAATTGGT CAACTTTCTTTGACAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)