These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7797#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1999 fasta sequence [TTCCGGGCGATATCCGGGGCGGCGCTCAGTGCCAACGTATCCACGCCGCTGTCCACGTCCGTGCTGCTGCTGATGCCGGAGGAGTCGTCGGCGTCCGCCACCGCGTCGTCGGGGTTTGAGAGCTCGGAGTCGTTCGCTGCTGTGCCGCTGCAGCCGGTGCCGAGGTTCTCGTCCGGGCCGATCTCCGCGCCCTTCTCCGGCGGGTTCATGTCGGGGCCCTTGGAGAGGGGGTTCCAATCTGGGCCACTCGACGCCGCGCTCCTCTCGGGCCCTCTCCCTGGCACCGCCACCTCCGGTCGTATGGGTGGCGCCGTCCCTGCGCTCCGCCGGAGCCTCTCCCACGGTGGCCGCCGCCTCCGCAATTTCACCCGCGCGCTCCTCGCGCGCACCGAGAAGTTTCAGGATTCTGCGGATCTAGGCTCGCCGGACGCCGCCGCCGCCGCCGTCGCCGCCTGTGGGGGCGATCCCTGTGGTCTGCAGTGGGCGCAGGGGAAAGCCGGCGAGGACCGCGTCCACGTCGTCGTGTCGGAGGAGCGAGGCTGGGTGTTCGTCGGCATCTACGATGGGTTCAACGGCCCCGACGCCACCGACTTCCTGGTATCCAACCTCTACGCCGCCGTCCACCGCGAGCTCCGCGGCCTCCTCTGGGATCAGCGGGAGCAGAACGTGCAGCACGACCAGCGCCCCGACCAACCCGGCTCAGCCCCAAGCACCACGGCCTCAGATAACCAAGACCAGTGGGGTCGCCGCCGCCGCACCCGCCGCTCAAGACCGCCGCGTGGCGCCGACGACGACCAGCGGCGGTGGAAGTGCGAGTGGGAGCAGGAGCGGGATTGCTCCAACCTGAAGCCACCAACGCAGCAGCGTCTTCGTTGCAACAGCGAGAACGACCACGTCGCCGTGCTCAAGGCGCTGACCCGTGCGCTGCACAGGACCGAGGAGGCTTACCTGGACATCGCCGACAAGATGGTCGGCGAGTTCACTGAGCTTGCGCTCATGGGCTCTTGTGTTCTTGCCATGCTCATGAAAGGAGAGGACATGTACATCATGAATGTTGGCGATAGCCGGGCTGTGTTGGCAACAATGGACAGCGTCGATCTCGAGCAGATCAGCCAGGGTTCATTCGATGGATCAGTCGGGGATTGCCCGCCATGCTTGTCGGCCGTGCAGCTCACGTCGGATCACAGCACTTCAGTGGAAGAGGAAGTAATCAGAATACGAAACGAGCATCCTGATGATCCATCTGCCATCTCCAAGGATCGCGTGAAGGGCTCGCTGAAGGTGACCAGAGCATTTGGTGCTGGGTTTTTGAAACAGCCCAAGTGGAATGATGCACTCCTGGAGATGTTCAGAATTGATTACGTTGGGTCCTCCCCATACATATCATGCAATCCATCCCTTTTTCATCATAAGCTCAGCACAAGGGATAGATTCTTGATATTATCTTCAGATGGACTTTACCAGTATTTCACCAACGAGGAGGCAGTTGCTCAGGTCGAAATGTTCATCGCAACAACCCCTGAAGGCGACCCTGCCCAACATCTTGTGGAGGAAGTTCTTTTCCGTGCTGCCAACAAAGCAGGAATGGACTTTCATGAACTGATCGAGATACCACATGG-TGATCGTCGGCGATACCATGACGATGTATCTGTCATCGTCATCTCTTTGGAGGGCAGGA-TTTGGAG-ATCCTGCGTGTAAATAGAAACAATAGTAGGCTAGTGAAACAAAACGTATAGA---GGGGGTTCTTCCCATGCCTTCCTTGAGCTGAGA--GGTGTTCTTGCGGCTACTCTACTCCTCTTCCCCCAGTTGCTACTGTACAATATCAACCAAGCACTGTGGGGGGTTGGATTCGGCTTGGGCTCTCGGCACATCCAGCTGAATCGCCATGAATCGCCCGCAGGGCTGGCCGCGTGGTATAATATG-TTGATGTAAATGAGGATTTGTTCAATTATTAATAATTTATAAAATCGACCAATTGGTCAACTTTCTTTGACAAAAA] [+] EMBL AK071722 [TTCCGGGCGATATCCGGGGCGGCGCTCAGTGCCAACGTATCCACGCCGCTGTCCACGTCCGTGCTGCTGCTGATGCCGGAGGAGTCGTCGGCGTCCGCCACCGCGTCGTCGGGGTTTGAGAGCTCGGAGTCGTTCGCTGCTGTGCCGCTGCAGCCGGTGCCGAGGTTCTCGTCCGGGCCGATCTCCGCGCCCTTCTCCGGCGGGTTCATGTCGGGGCCCTTGGAGAGGGGGTTCCAATCTGGGCCACTCGACGCCGCGCTCCTCTCGGGCCCTCTCCCTGGCACCGCCACCTCCGGTCGTATGGGTGGCGCCGTCCCTGCGCTCCGCCGGAGCCTCTCCCACGGTGGCCGCCGCCTCCGCAATTTCACCCGCGCGCTCCTCGCGCGCACCGAGAAGTTTCAGGATTCTGCGGATCTAGGCTCGCCGGACGCCGCCGCCGCCGCCGTCGCCGCCTGTGGGGGCGATCCCTGTGGTCTGCAGTGGGCGCAGGGGAAAGCCGGCGAGGACCGCGTCCACGTCGTCGTGTCGGAGGAGCGAGGCTGGGTGTTCGTCGGCATCTACGATGGGTTCAACGGCCCCGACGCCACCGACTTCCTGGTATCCAACCTCTACGCCGCCGTCCACCGCGAGCTCCGCGGCCTCCTCTGGGATCAGCGGGAGCAGAACGTGCAGCACGACCAGCGCCCCGACCAACCCGGCTCAGCCCCAAGCACCACGGCCTCAGATAACCAAGACCAGTGGGGTCGCCGCCGCCGCACCCGCCGCTCAAGACCGCCGCGTGGCGCCGACGACGACCAGCGGCGGTGGAAGTGCGAGTGGGAGCAGGAGCGGGATTGCTCCAACCTGAAGCCACCAACGCAGCAGCGTCTTCGTTGCAACAGCGAGAACGACCACGTCGCCGTGCTCAAGGCGCTGACCCGTGCGCTGCACAGGACCGAGGAGGCTTACCTGGACATCGCCGACAAGATGGTCGGCGAGTTCACTGAGCTTGCGCTCATGGGCTCTTGTGTTCTTGCCATGCTCATGAAAGGAGAGGACATGTACATCATGAATGTTGGCGATAGCCGGGCTGTGTTGGCAACAATGGACAGCGTCGATCTCGAGCAGATCAGCCAGGGTTCATTCGATGGATCAGTCGGGGATTGCCCGCCATGCTTGTCGGCCGTGCAGCTCACGTCGGATCACAGCACTTCAGTGGAAGAGGAAGTAATCAGAATACGAAACGAGCATCCTGATGATCCATCTGCCATCTCCAAGGATCGCGTGAAGGGCTCGCTGAAGGTGACCAGAGCATTTGGTGCTGGGTTTTTGAAACAGCCCAAGTGGAATGATGCACTCCTGGAGATGTTCAGAATTGATTACGTTGGGTCCTCCCCATACATATCATGCAATCCATCCCTTTTTCATCATAAGCTCAGCACAAGGGATAGATTCTTGATATTATCTTCAGATGGACTTTACCAGTATTTCACCAACGAGGAGGCAGTTGCTCAGGTCGAAATGTTCATCGCAACAACCCCTGAAGGCGACCCTGCCCAACATCTTGTGGAGGAAGTTCTTTTCCGTGCTGCCAACAAAGCAGGAATGGACTTTCATGAACTGATCGAGATACCACATGG TGATCGTCGGCGATACCATGACGATGTATCTGTCATCGTCATCTCTTTGGAGGGCAGGA TTTGGAG ATCCTGCGTGTAAATAGAAACAATAGTAGGCTAGTGAAACAAAACGTATAGA GGGGGTTCTTCCCATGCCTTCCTTGAGCTGAGA GGTGTTCTTGCGGCTACTCTACTCCTCTTCCCCCAGTTGCTACTGTACAATATCAACCAAGCACTGTGGGGGGTTGGATTCGGCTTGGGCTCTCGGCACATCCAGCTGAATCGCCATGAATCGCCCGCAGGGCTGGCCGCGTGGTATAATATG TTGATGTAAATGAGGATTTGTTCAATTATTAATAATTTAT ] [+] EMBL AK073306 [ GGAGGCTTACCTGGACATCGCCGACAAGATGGTCGGCGAGTTCCCTGAGCTTGCGCTCATGGGCTCTTGTGTTCTTGCCATGCTCATGAAAGGAGAGGACATGTACATCATGAATGTTGGCGATAGCCGGGCTGTGTTGGCAACAATGGACAGCGTCGATCTCGAGCAGATCAGCCAGGGTTCATTCGATGGATCAGTCGGGGATTGCCCGCCATGCTTGTCGGCCGTGCAGCTCACGTCGGATCACAGCACTTCAGTGGAAGAGGAAGTAATCAGAATACGAAACGAGCATCCTGATGATCCATCTGCCATCTCCAAGGATCGCGTGAAGGGCTCGCTGAAGGTGACCAGAGCATTTGGTGCTGGGTTTTTGAAACAGTCCAAGTGGAATGATGCACTCCTGGAGATGTTCAGAATTGATTACGTTGGGTCCTCCCCATACATATCATGCAATCCATCCCTTTTTCATCATAAGCTCAGCACAAGGGATAGATTCTTGATATTATCTTCAGATGGACTTTACCAGTATTTCACCAACGAGGAGGCAGTTGCTCAGGTCGAAATGTTCATCGCAACAACCCCTGAAGGCGACCCTGCCCAACATCTTGTGGAGGAAGTTCTTTTCCGTGCTGCCAACAAAGCAGGAATGGACTTTCATGAACTGATCGAGATACCACATGG TGATCGTCGGCGATACCATGACGATGTATCTGTCATCGTCATCTCTTTGGAGGGCAGGA TTTGGAG ATCCTGCGTGTAAATAGAAACAATAGTAGGCTAGTGAAACAAAACGTATAGA GGGGGTTCTTCCCATGCCTTCCTTGAGCTGAGA GGTGTTCTTGCGGCTACTCTACTCCTCTTCCCCCAGTTGCTACTGTACAATATCAACCAAGCACTGTGGGGGGTTGGATTCG GGGCTCTCGGCACATCCAGCTGAATCGCCATGAATCGCCCGCAGGGCTGGCCGCGTGGTATAATATG TTGATGTAAATGAGGATTTGTTCAATTATTAATAATTTATAAAATCGACCAATTGGTCA ] [+] EMBL CF324133 [ GAAGAGGAAGTAATCAGAATACGAAACGAGCATCCTGATGATCCATCTGCCATCTCCAAGGATCGCGTGAAGGGCTCGCTGAAGGTGACCAGAGCATTTGGTGCTGGGTTTTTGAAACAGCCCAAGTGGAATGATGCACTCCTGGAGATGTTCAGAATTGATTACGTTGGGTCCTCCCCATACATATCATGCAATCCATCCCTTTTTCATCATAAGCTCAGCACAAGGGATAGATTCTTGATATTATCTTCAGATGGACTTTACCAGTATTTCACCAACGAGGAGGCAGTTGCTCAGGTCGAAATGTTCATCGCAACAACCCCTGAAGGCGACCCTGCCCAACATCTTGTGGAGGAAGTTCTTTTCCGTGCTGCCAACAAAGCAGGAATGGACTTTCATGAACTGATCGAGATACCACATGGNTGATCGTCGGCGATACCATGACGATGTATCTGTCATCGTCATCTCTTTGGAGGGCAGGATTTTGGAGAATCCTGCGTGTAAATAGAAACAATAGTAGGCTAGTGAAACAAAACG ATAGAAAGGGGGGTTCTTCCCATGCCTTCCTTGA CTGAAAAGGGTG TCTTGCGGCTACTCTACTCCTCTTCCCCCAGTTGCTACT ] [-] EMBL CB657199 [ CGTGAAGGGCTCGCTGAAGGTGACCAGAGCATTTGGTGCTGGGTTTTTGAAACAGCCCAAGTGGAATGATGCACTCCTGGAGATGTTCAGAATTGATTACGTTGGGTCCTCCCCATACATATCATGCAATCCATCCCTTTTTCATCATAAGCTCAGCACAAGGGATAGATTCTTGATATTATCTTCAGATGGACTTTACCAGTATTTCACCAACGAGGAGGCAGTTGCTCAGGTCGAAATGTTCATCGCAACAACCCCTGAAGGCGACCCTGCCCAACATCTTGTGGAGGAAGTTCTTTTCCGTGCTGCCAACAAAGCAGGAATGGACTTTCATGAACTGATCGAGATACCACATGG TGATCGTCGGCGATACCATGACGATGTATCTGTCATCGTCATCTCTTTGGAGGGCAGGA TTTGGAG ATCCTGCGTGTAAATAGAAACAATAGTAGGCTAGTGAAACAAAACGTATAGA GGGGGTTCTTCCCATGCCTTCCTTGAGCTGAGA GGTGTTCTTGCGGCTACTCTACTCCTCTTCCCCCAGTTGCTACTGTACAATATCAACCAAGCACTGTGGGGGGTTGGATTCGGCTTGGGCTCTCGGCACATCCAGCTGAATCGCCATGAATCGCCCGCAGGGCTGGCCGCGTGGTATAATATG TTGATGTAAATGAGGATTTGTTCAATTATTAATAATTTATAAAATCGACCAATTGGTCAACT ] [+] EMBL BM420818 [ TGGAGGAAGTTCTTTTCCGTGCTGCCAACAAAGCAGGAATGGACTTTCATGAACTGATCGAGATACCACATGG TGATCGTCGGCGATACCATGACGATGTATCTGTCATCGTCATCTCTTTGGAGGGCAGGA TTTGGAG ATCCTGCGTGTAAATAGAAACAATAGTAGGCTAGTGAAAC AAACGTATAGA GGGGGTTCTTCCCATGCCTTCCTTGAGCTGAGA GGTGTTCTTGCGGCTACTCTACTCCTCTTCCCCCAGTTGCTACTGTAC ATATCAACCAAGCACTGTGGGGGGTTGGATTCGGCTTGGGCTCTCGGCACATCCAGCTGAATCGCCATGAATCGCCCGCAGGGCT GCCGCGTGGTATAATATGTTTGATGTAAATGAGGATTTGTTCAATTATTAATAATTTATAAAATCGACCCATTGGTCAACTTTCTTTGACAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||