These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7803#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1223 fasta sequence [TCGAGCACTCCGTTCTCCCGGGTCTCCGGTGCTGCTCCCGCCGCAGCCGGACACCCGAACGCGAAGCTCCAACTCTCCAATGCTCCCCTCGTCTCGTTACCTCCTCGCCCCGGCCCCACTTCCCGCCATGGTGGTACGGCCACCGCCGCCGCATCCACCGAGCCGCGGAACTTCCCCTCTCGCTCGGCCACCATTGTGCCGCGCCATGGCGCGGGCCGCCCCCTCGCTCTCTGCCGCGGCCTCGACGGCTGCCTCCTCCTCGACGACTCCTGCCAAGAAGAAGGTTCTCTTGCCCATCGCCATGGGCACGGAGGAGATGGAGGCAGTCATCCTTGCCGGTGTACTCCGCCGAGCCGGCGCCGACGTGACGCTGGCATCCGTGGAGGACGGCCTCGAGGTGGAGGCCTCGCGTGGCTCCCACATCGTTGCTGACAAGCGCATTGCCGCTTGTGCAGACCAGGTGTTCGACCTCGTGGCTCTCCCGGGTGGAATGCCTGGTTCAGTGCGGTTGAGAGACAGTGTGATCCTTCAGAGGATCACAGTTAGACAGGCTGAGGAAAAAAGATTGTATGGTGCTATATGTGCTGCACCAGCTGTTGTTCTCATGCCGTGGGGCCTCCACAAGAGAAAAAAGATCACTTGTCACCCATCCTTTATAGAAGATCTCCCAACATTCCGAACTGTTGAATCAAATGTTCAGGTGTCTGGAGAGCTAACAACAAGCCGTGGACCAGGGACAGCATTTCAGTTTGCTTTATCATTTGTAGAGCAGTT-GTTTGGGCCTTGTAAAGCTGAAGATATGGACAACACTTTGTTGACAAAGGTTGACGATAATCTTGAAAGAAGTATTGAAGTCAACGAAATTGAGTGGTCTTCTGATCACAATCCTCATGTTCTCATTCCAATTGCAAATGGTTCAGGAGAGATGGAGATAATAATGTTGACGGATGTTTTACGGCGAGCAAATGTAAATGTGGTGTTGGCATCAGTTGAAAAATCAACAAGTATTGTCGGGTCCCAAAGGATGAGGATTGTTGCTGATAAATGCATTTCAGATGCTTCTGCCTTAGAATATGATCTAATTATCCTTCCTGGAGGACCTGCCGGAGCTGAGAGACTGCACAAGTCCAGTGTTCTTAAGAAATTACTCAAGGAACAAAAGCAAACAGGCAGGATGTATGGTGGGATCTGTTCTTCTCCTGTGATCTTGCAGAAGCAGGGTT] [+] EMBL AK102422 [TCGAGCACTCCGTTCTCCCGGGTCTCCGGTGCTGCTCCCGCCGCAGCCGGACACCCGAACGCGAAGCTCCAACTCTCCAATGCTCCCCTCGTCTCGTTACCTCCTCGCCCCGGCCCCACTTCCCGCCATGGTGGTACGGCCACCGCCGCCGCATCCACCGAGCCGCGGAACTTCCCCTCTCGCTCGGCCACCATTGTGCCGCGCCATGGCGCGGGCCGCCCCCTCGCTCTCTGCCGCGGCCTCGACGGCTGCCTCCTCCTCGACGACTCCTGCCAAGAAGAAGGTTCTCTTGCCCATCGCCATGGGCACGGAGGAGATGGAGGCAGTCATCCTTGCCGGTGTACTCCGCCGAGCCGGCGCCGACGTGACGCTGGCATCCGTGGAGGACGGCCTCGAGGTGGAGGCCTCGCGTGGCTCCCACATCGTTGCTGACAAGCGCATTGCCGCTTGTGCAGACCAGGTGTTCGACCTCGTGGCTCTCCCGGGTGGAATGCCTGGTTCAGTGCGGTTGAGAGACAGTGTGATCCTTCAGAGGATCACAGTTAGACAGGCTGAGGAAAAAAGATTGTATGGTGCTATATGTGCTGCACCAGCTGTTGTTCTCATGCCGTGGGGCCTCCACAAGAGAAAAAAGATCACTTGTCACCCATCCTTTATAGAAGATCTCCCAACATTCCGAACTGTTGAATCAAATGTTCAGGTGTCTGGAGAGCTAACAACAAGCCGTGGACCAGGGACAGCATTTCAGTTTGCTTTATCATTTGTAGAGCAGTT GTTTGGGCCTTGTAAAGCTGAAGATATGGACAACACTTTGTTGACAAAGGTTGACGATAATCTTGAAAGAAGTATTGAAGTCAACGAAATTGAGTGGTCTTCTGATCACAATCCTCATGTTCTCATTCCAATTGCAAATGGTTCAGGAGAGATGGAGATAATAATGTTGACGGATGTTTTACGGCGAGCAAATGTAAATGTGGTGTTGGCATCAGTTGAAAAATCAACAAGTATTGTCGGGTCCCAAAGGATGAGGATTGTTGCTGATAAATGCATTTCAGATGCTTCTGCCTTAGAATATGATCTAATTATCCTTCCTGGAGGACCTGCCGGAGCTGAGAGACTGCACAAGTCCAGTGTTCTTAAGAAATTACTCAAGGAACAAAAGCAAACAGGCAGGATGTATGGTGGGATCTGTTCTTCTCCTGTGATCTTGCAGAAGCAGGGTT] [+] EMBL CF323982 [ CAGTCATCCTTGCCGGTGTACTCCGCCGAGCCGGCGCCGACGTGACGCTGGCATCCGTGGAGGACGGCCTCGAGGTGGAGGCCTCGCGTGGCTCCCACATCGTTGCTGACAAGCGCATTGCCGCTTGTGCAGACCAGGTGTTCGACCTCGTGGCTCTCCCGGGTGGAATGCCTGGTTCAGTGCGGTTGAGAGACAGTGTGATCCTTCAGAGGATCACAGTTAGACAGGCTGAGGAAAAAAGATTGTATGGTGCTATATGTGCTGCACCAGCTGTTGTTCTCATGCCGTGGGGCCTCCACAAGAGAAAAAAGATCACTTGTCACCCATCCTTTATAGAAGATCTCCCAACATTCCGAACTGTTGAATCAAATGTTCAGGTGTCTGGAGAGCTAACAACAAGCCGTGGACCAGGGACAGCATTTCAGTTTGCTTTATCATTTGTAGAGCAGTTGGTTTGGGCCTTGTAAAGCTGAAGATA ] consensusID : consensus_7803#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 944 fasta sequence [TTGTTCCAGGCTCGAGCACTCCGTTCTCCCGGGTCTCCGGTGCTGCTCCCGC-CGCAGCCGGACACCCGAACGCGAAGCTCCAACTCTCCAATG-CTCCCCTCGTCTCGTTACCTCCTCGCCCCGGCCCCACTTCCCGCCATGGTGGTACGGCCACCGCCGCCGCATCCACCGAGCCGCGGAACTTCCCCTCTCGCTCGGCCACCATTGTGCCGCGCCATGGCGCGGGCCGCCCCCTCGCTCTCTGCCGCGGCCTCGACGGCTGCCTCCTCCTCGACGACTCCTGCCAAGAAGAAGGTTCTCTTGCCCATCGCCATGGGCACGGAGGAGATGGAGGCAGTCATCCTTGCCGGTGTACTCCGCCGAGCCGGCGCCGACGTGACGCTGGCATCCGTGGAGGACGGCCTCGAGGTGGAGGCCTCGCGTGGCTCCCACATCGTTGCTGACAAGCGCATTGCCGCTTGTGCAGACCAGGTGTTCGACCTCGTGGCTCTCCCGTTGACAAAGGTTGACGATAATCTTGAAAGAAGTATTGAAGTCAACGAAATTGAGTGGTCTTCTGATCACAATCCTCATGTTCTCATTCCAATTGCAAATGGTTCAGAAGAGATGGAGATAATAATGTTGACGGATGTTTTACGGCGAGCAAATGTAAATGTGGTGTTGGCATCAGTTGAAAAATCAACAAGTATTGTCGGGTCCCAAAGGATGAGGATTGTTGCTGATAAATGCATTTCAGATGCTTCTGCCTTAGAATATGATCTAATTATCCTTCCTGTGAGCTATTTCTCATTTCATATTTTCATTTAGATATCATAAATGCCGACATATAAGTTCATTGTTGTTCCTACAAGATATTTTGCATATAGCTGGTTCATGGACTGGTACAAATCCCCATCTTATCATCATCATGATGCTTGCTTTTAACCTTATCTTGAATGTAGCTG] [+] EMBL AK071101 [TTGTTCCAGGCTCGAGCACTCCGTTCTCCCGGGTCTCCGGTGCTGCTCCCGC CGCAGCCGGACACCCGAACGCGAAGCTCCAACTCTCCAATG CTCCCCTCGTCTCGTTACCTCCTCGCCCCGGCCCCACTTCCCGCCATGGTGGTACGGCCACCGCCGCCGCATCCACCGAGCCGCGGAACTTCCCCTCTCGCTCGGCCACCATTGTGCCGCGCCATGGCGCGGGCCGCCCCCTCGCTCTCTGCCGCGGCCTCGACGGCTGCCTCCTCCTCGACGACTCCTGCCAAGAAGAAGGTTCTCTTGCCCATCGCCATGGGCACGGAGGAGATGGAGGCAGTCATCCTTGCCGGTGTACTCCGCCGAGCCGGCGCCGACGTGACGCTGGCATCCGTGGAGGACGGCCTCGAGGTGGAGGCCTCGCGTGGCTCCCACATCGTTGCTGACAAGCGCATTGCCGCTTGTGCAGACCAGGTGTTCGACCTCGTGGCTCTCCCGTTGACAAAGGTTGACGATAATCTTGAAAGAAGTATTGAAGTCAACGAAATTGAGTGGTCTTCTGATCACAATCCTCATGTTCTCATTCCAATTGCAAATGGTTCAGAAGAGATGGAGATAATAATGTTGACGGATGTTTTACGGCGAGCAAATGTAAATGTGGTGTTGGCATCAGTTGAAAAATCAACAAGTATTGTCGGGTCCCAAAGGATGAGGATTGTTGCTGATAAATGCATTTCAGATGCTTCTGCCTTAGAATATGATCTAATTATCCTTCCTGTGAGCTATTTCTCATTTCATATTTTCATTTAGATATCATAAATGCCGACATATAAGTTCATTGTTGTTCCTACAAGATATTTTGCATATAGCTGGTTCATGGACTGGTACAAATCCCCATCTTATCATCATCATGATGCTTGCTTTTAACCTTATCTTGAATGTAGCTG] [+] EMBL CB641188 [ gatcaCCGCTCGTACCCGGCAACCCCAACGCAAATCTCCAACTCTACAATGACTCCCCTCGTCTAGATACCTCCTCGACCCGGCCCCACTTCCCGCCATGGTGGTACGGACACCGCCGTCGCATTCACCGAGCCGCGGAACTTCCCCTCTCGCTCGGCCACCATTGTGCCGCGCCATGGCGCGGGCCGCCCCCTCGCTCTCTGCCGCGGCCTCGACGGCTGCCTCCTCCTCGACGACTCCTGCCAAGAAGAAGGTTCTCTTGCCCATCGCCATGGGCACGGAGGAGATGGAGGCAGTCATCCTTGCCGGTGTACTCCGCCGAGCCGGCGCCGACGTGACGCTGGCATCCGTGGAGGACGGCCTCGATGTGGAGGCCTCGCGTGGCTCCCACATCGTTGat ] consensusID : consensus_7803#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [TCACCCATCCTTTATAGAAGATCTCCCAACATTCCGAACTGTTGAATCAAATGTTCAGGTGTCTGGAGAGCTAACAACAAGCCGTGGACCAGGGACAGCATTTCAGTTTGCTTTATCATTTGTAGAGCAGTTGTTTGGGCCTTGTAAAGCTGAAGATATGGACAACACTTTGTTGACAAAGGTTGACGATAATCTTGAAGGAAGTATTGAAGTCAACGAAATTGAGTGGACTTCTGATCACAATCCTCATGTTCTCATTCCAATTGCAAATGGTTCAGAAGAGATGGAGATAATAATGTTGACGGATGTTTTACGGCGAGCAAATGTAAATGTGGTGTTGGCATCAGTTGAAAAATCAACAAGTATTGTCGGGTCCCAAAGGATGAGGATTGTTGCTGATAAATGCATTTCAGATGCTTCTGCCTTAGAATATGATCTAATTATCCTTCCTGTGAGCTATTTCTCATTTCATATTTTCATTTAGATATCATAAATGCCGACATATAAGCTCATTGTTGTTCCCACAAGATATTTTGCATATAGCTGGTTCATGGACTGGTACAAATCCCCATCTTATCATCATCATGATGCTTGCTTTTAAA] [+] EMBL CA767127 [TCACCCATCCTTTATAGAAGATCTCCCAACATTCCGAACTGTTGAATCAAATGTTCAGGTGTCTGGAGAGCTAACAACAAGCCGTGGACCAGGGACAGCATTTCAGTTTGCTTTATCATTTGTAGAGCAGTTGTTTGGGCCTTGTAAAGCTGAAGATATGGACAACACTTTGTTGACAAAGGTTGACGATAATCTTGAAGGAAGTATTGAAGTCAACGAAATTGAGTGGACTTCTGATCACAATCCTCATGTTCTCATTCCAATTGCAAATGGTTCAGAAGAGATGGAGATAATAATGTTGACGGATGTTTTACGGCGAGCAAATGTAAATGTGGTGTTGGCATCAGTTGAAAAATCAACAAGTATTGTCGGGTCCCAAAGGATGAGGATTGTTGCTGATAAATGCATTTCAGATGCTTCTGCCTTAGAATATGATCTAATTATCCTTCCTGTGAGCTATTTCTCATTTCATATTTTCATTTAGATATCATAAATGCCGACATATAAGCTCATTGTTGTTCCCACAAGATATTTTGCATATAGCTGGTTCATGGACTGGTACAAATCCCCATCTTATCATCATCATGATGCTTGCTTTTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7803#0 -----------TCGAGCACTCCGTTCTCCCGGGTCTCCGGTGCTGCTCCCGCCGCAGCCG 49 consensus_7803#1 TTGTTCCAGGCTCGAGCACTCCGTTCTCCCGGGTCTCCGGTGCTGCTCCCGCCGCAGCCG 60 consensus_7803#2 ------------------------------------------------------------ consensus_7803#0 GACACCCGAACGCGAAGCTCCAACTCTCCAATGCTCCCCTCGTCTCGTTACCTCCTCGCC 109 consensus_7803#1 GACACCCGAACGCGAAGCTCCAACTCTCCAATGCTCCCCTCGTCTCGTTACCTCCTCGCC 120 consensus_7803#2 ------------------------------------------------------------ consensus_7803#0 CCGGCCCCACTTCCCGCCATGGTGGTACGGCCACCGCCGCCGCATCCACCGAGCCGCGGA 169 consensus_7803#1 CCGGCCCCACTTCCCGCCATGGTGGTACGGCCACCGCCGCCGCATCCACCGAGCCGCGGA 180 consensus_7803#2 ------------------------------------------------------------ consensus_7803#0 ACTTCCCCTCTCGCTCGGCCACCATTGTGCCGCGCCATGGCGCGGGCCGCCCCCTCGCTC 229 consensus_7803#1 ACTTCCCCTCTCGCTCGGCCACCATTGTGCCGCGCCATGGCGCGGGCCGCCCCCTCGCTC 240 consensus_7803#2 ------------------------------------------------------------ consensus_7803#0 TCTGCCGCGGCCTCGACGGCTGCCTCCTCCTCGACGACTCCTGCCAAGAAGAAGGTTCTC 289 consensus_7803#1 TCTGCCGCGGCCTCGACGGCTGCCTCCTCCTCGACGACTCCTGCCAAGAAGAAGGTTCTC 300 consensus_7803#2 ------------------------------------------------------------ consensus_7803#0 TTGCCCATCGCCATGGGCACGGAGGAGATGGAGGCAGTCATCCTTGCCGGTGTACTCCGC 349 consensus_7803#1 TTGCCCATCGCCATGGGCACGGAGGAGATGGAGGCAGTCATCCTTGCCGGTGTACTCCGC 360 consensus_7803#2 ------------------------------------------------------------ consensus_7803#0 CGAGCCGGCGCCGACGTGACGCTGGCATCCGTGGAGGACGGCCTCGAGGTGGAGGCCTCG 409 consensus_7803#1 CGAGCCGGCGCCGACGTGACGCTGGCATCCGTGGAGGACGGCCTCGAGGTGGAGGCCTCG 420 consensus_7803#2 ------------------------------------------------------------ consensus_7803#0 CGTGGCTCCCACATCGTTGCTGACAAGCGCATTGCCGCTTGTGCAGACCAGGTGTTCGAC 469 consensus_7803#1 CGTGGCTCCCACATCGTTGCTGACAAGCGCATTGCCGCTTGTGCAGACCAGGTGTTCGAC 480 consensus_7803#2 ------------------------------------------------------------ consensus_7803#0 CTCGTGGCTCTCCCGGGTGGAATGCCTGGTTCAGTGCGGTTGAGAGACAGTGTGATCCTT 529 consensus_7803#1 CTCGTGGCTCTCCCG--------------------------------------------- 495 consensus_7803#2 ------------------------------------------------------------ consensus_7803#0 CAGAGGATCACAGTTAGACAGGCTGAGGAAAAAAGATTGTATGGTGCTATATGTGCTGCA 589 consensus_7803#1 ------------------------------------------------------------ consensus_7803#2 ------------------------------------------------------------ consensus_7803#0 CCAGCTGTTGTTCTCATGCCGTGGGGCCTCCACAAGAGAAAAAAGATCACTTGTCACCCA 649 consensus_7803#1 ------------------------------------------------------------ consensus_7803#2 -----------------------------------------------------TCACCCA 7 consensus_7803#0 TCCTTTATAGAAGATCTCCCAACATTCCGAACTGTTGAATCAAATGTTCAGGTGTCTGGA 709 consensus_7803#1 ------------------------------------------------------------ consensus_7803#2 TCCTTTATAGAAGATCTCCCAACATTCCGAACTGTTGAATCAAATGTTCAGGTGTCTGGA 67 consensus_7803#0 GAGCTAACAACAAGCCGTGGACCAGGGACAGCATTTCAGTTTGCTTTATCATTTGTAGAG 769 consensus_7803#1 ------------------------------------------------------------ consensus_7803#2 GAGCTAACAACAAGCCGTGGACCAGGGACAGCATTTCAGTTTGCTTTATCATTTGTAGAG 127 consensus_7803#0 CAGTTGTTTGGGCCTTGTAAAGCTGAAGATATGGACAACACTTTGTTGACAAAGGTTGAC 829 consensus_7803#1 ---------------------------------------------TTGACAAAGGTTGAC 510 consensus_7803#2 CAGTTGTTTGGGCCTTGTAAAGCTGAAGATATGGACAACACTTTGTTGACAAAGGTTGAC 187 *************** consensus_7803#0 GATAATCTTGAAAGAAGTATTGAAGTCAACGAAATTGAGTGGTCTTCTGATCACAATCCT 889 consensus_7803#1 GATAATCTTGAAAGAAGTATTGAAGTCAACGAAATTGAGTGGTCTTCTGATCACAATCCT 570 consensus_7803#2 GATAATCTTGAAGGAAGTATTGAAGTCAACGAAATTGAGTGGACTTCTGATCACAATCCT 247 ************ ***************************** ***************** consensus_7803#0 CATGTTCTCATTCCAATTGCAAATGGTTCAGGAGAGATGGAGATAATAATGTTGACGGAT 949 consensus_7803#1 CATGTTCTCATTCCAATTGCAAATGGTTCAGAAGAGATGGAGATAATAATGTTGACGGAT 630 consensus_7803#2 CATGTTCTCATTCCAATTGCAAATGGTTCAGAAGAGATGGAGATAATAATGTTGACGGAT 307 ******************************* **************************** consensus_7803#0 GTTTTACGGCGAGCAAATGTAAATGTGGTGTTGGCATCAGTTGAAAAATCAACAAGTATT 1009 consensus_7803#1 GTTTTACGGCGAGCAAATGTAAATGTGGTGTTGGCATCAGTTGAAAAATCAACAAGTATT 690 consensus_7803#2 GTTTTACGGCGAGCAAATGTAAATGTGGTGTTGGCATCAGTTGAAAAATCAACAAGTATT 367 ************************************************************ consensus_7803#0 GTCGGGTCCCAAAGGATGAGGATTGTTGCTGATAAATGCATTTCAGATGCTTCTGCCTTA 1069 consensus_7803#1 GTCGGGTCCCAAAGGATGAGGATTGTTGCTGATAAATGCATTTCAGATGCTTCTGCCTTA 750 consensus_7803#2 GTCGGGTCCCAAAGGATGAGGATTGTTGCTGATAAATGCATTTCAGATGCTTCTGCCTTA 427 ************************************************************ consensus_7803#0 GAATATGATCTAATTATCCTTCCTGGAGGACCTGCCGGAGCTGAGA----------GACT 1119 consensus_7803#1 GAATATGATCTAATTATCCTTCCTGTGAGCTATTTCTCATTTCATATTTTCATTTAGATA 810 consensus_7803#2 GAATATGATCTAATTATCCTTCCTGTGAGCTATTTCTCATTTCATATTTTCATTTAGATA 487 ************************* * * * * * * * ** consensus_7803#0 GCACAAGTCCAGTGTTCTTAAGAAATTACTCAAGGAACAAAA------GCAAACAGGCAG 1173 consensus_7803#1 TCATAAATGCCGACATATAAGTTCATTGTTGTTCCTACAAGATATTTTGCATATAGCTGG 870 consensus_7803#2 TCATAAATGCCGACATATAAGCTCATTGTTGTTCCCACAAGATATTTTGCATATAGCTGG 547 ** ** * * * * * * *** * **** * *** * ** * consensus_7803#0 GATGTATGGTGGGATCTGTTCTTCTCCTGTGATCTTGCAGAAGCAGGGTT---------- 1223 consensus_7803#1 TTCATGGACTGGTACAAATCCCCATCTTATCATCATCATGATGCTTGCTTTTAACCTTAT 930 consensus_7803#2 TTCATGGACTGGTACAAATCCCCATCTTATCATCATCATGATGCTTGCTTTTAAA----- 602 * *** * * * ** * * *** * ** ** * ** consensus_7803#0 -------------- consensus_7803#1 CTTGAATGTAGCTG 944 consensus_7803#2 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||