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Oryza sativa
cluster # 7808 cluster # 7808       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7808#0 length = 2192 sequences # 5  

consensusID : consensus_7808#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2192
fasta sequence
                              [ACGACGACTCGCCTGGACGCGCCGCCGCCGTCGCCGCCGCCGCCGCAGCAGCAGCAGCCGCCGGAGATGGAGATGGAGGACATCGAGGACGTGCTGGGGCCGGCCGGGATCGCCGGCGGCGGGGCGGCTCCGGGGCTCCGTCTCCCGCTCGCCGCCGTCGCCGTGAAGCCCAAGCGTCCGAGATCGTCCAGGGTCGCGCAGACCCGGCCGCAGCCCGAGGCCCGGATCCCCGGGACGCAGACGATATATGTGAAGACGTTCGGGTGCTCGCATAACCAGAGTGACAGTGAGTACATGTCAGGGCAGCTGTCAGCGTTTGGATATGCGATCACTGAAGAGCCCGAAGGAGCGGATTTGTGGCTAATTAACACATGCACTGTGAAAAACCCAAGTCAGTCTGCCATGACAACTCTCATATCGAAGTGCAAGAGTGCAAACAAGCCTTTGGTTGTGGCTGGATGTGTACCACAAGGAAGCCGGGATCTGAAAGAGCTTGAAGGTATTAGCGTTATTGGAGTGCAACAGATTGACCGCGTTGTTGAAGTTGTTGAAGAAACCTTAAAAGGCCATGAGGTTCGGTTGTTGAGTCGGAAAACACTGCCCTCACTTGATTTACCTAAGGTAAGGAAGAACAAATTTATCGAGATTCTTCCTATTAATGTTGGGTGTTTGGGTGCTTGCACATACTGCAAGACAAAGCATGCTCGTGGTCATCTTGGAAGCTATACTATAGAAAGTTTGGTAGATCGTGTGAAAATTGTTGTCTCTGAAGGTGTCCGAGAAATATGGTTGAGTAGTGAGGATACTGGTGCTTATGGCAGGGATATCGGTACAAATCTTCCAAATCTATTAAATGGAATTGCTGCTGAGCTTCCTGCGGACAGAAGCACGATGCTTCGCATTGGCATGACCAATCCTCCTTTCATATTGGAGCATTTGAAGGAGATTGCTAGTGTTTTGTGCCATCCCTGTGTTTATTCTTTCCTCCACGTTCCTGTACAATCAGGAAGTGATGCAGTTTTAACGGCAATGAATCGTGAATACACTGTGAGTGAATTCAGGAGGGTAGTTGACACTCTTTGTGAGCTTGTCCCTGGAATGCAAATT-GCTACAGATATTATTTGT-GGATTCCCCGGT-GA-GACT-GATGAGG-A-TTTCTCTCAAACTGTTAACCTTGTAAAACAATATCTATTCCCTCAGGTTCACATATCACAATTCTACCCCAGACCAGGAACACCTGCTGCTAGGATGAAAAAGGTTCCAAGCGTTGAAGTGAAGAAAAGGAGCCGTGAATTGACCTCAGTTTTCGAGTCATTTTCACCCTACCAAGGAATGGAAGGCAAAGTAGAGAGGATATGGATCACTGAAATAGCTACTGATGGTGTTCATTTGGTTGGACATACCAAAGGATATATCCAGGTGCTTGTCATTGCTCCTGATAGCATGTTAGGAACATCAGCAGATGTGAAGATCACATCTGTTGGGAGATGGTCTGTGTTTGGTGAAGTGATAGAAGGATCCGTTGTAGCAAAGGAAACACAGAAGCATAATCACAGTGAACTGCAAGAAGAATACAGGCCAAGTCAGGTTGAGGAAGCCACTTGCTGCGGCACGGACTCTTGTGGTGCCTGCACATGCTCTGATGCAGCACAGCGATGCAATCCCGGTCCAGAGCGATCCGAAAATTCGACGCCCCAATCCTGTGGTGATGCTACTCATCAGGAAGCTGTTCAGTCTAAACTTGTGAGAAGAAATGTTGAAGGAGCGGTGAAAAGTAGCGAAAGTGATACAGCGAAACAGGTAGGGGAGATTCAGCGACTAAATGTAGCAGCTAGGAGGTTCCCAGATGTTGATACGATTCTGTGGGGTGGTTTGGCCGTGAGCTTTGCCACGACAGTAACCCTCATTGCACTGCTAGCTTACAAGATTTCTTCCACGCCCTCCTACTAGTAAGTCTGGTGCATGTGTAACTGTAGTTGAGCTGTGTGTTACTGCTCAGTTTTGACCATTTTTCTGTATCCATCCTCGATCCTTCTGTTTGCCGCAAAGATATGCAATGGAACTGTAATTCATTATTTCAACAAGTTCTCTAATAACCTTTCCCCCCGACCTTTCTAAATAAGTAGAAGATACAATTAGTATTTTTAAGAGTAATGATGACCAAGGAGAGTTGGTGGTCTAAAAAAAAAAGAGAA]

[+] EMBL CB630436             [ACGACGACTCGCCTGGACGCGCCGCCGCCGTCGCCGCCGCCGCCGCAGCAGCAGCAGCCGCCGGAGATGGAGATGGAGGACATCGAGGACGTGCTGGGGCCGGCCGGGATCGCCGGCGGCGGGGCGGCTCCGGGGCTCCGTCTCCCGCTCGCCGCCGTCGCCGTGAAGCCCAAGCGTCCGAGATCGTCCAGGGTCGCGCAGACCCGGCCGCAGCCCGAGGCCCGGATCCCCGGGACGCAGACGATATATGTGAAGACGTTCGGGTGCTCGCATAACCAGAGTGACAGTGAGTACATGTCAGGGCAGCTGTCAGCGTTTGGATATGCGATCACTGAAGAGCCCGAAGGAGCGGATTTGTGGCTAATTAACACATGCACTGTGAAAAACCCAAGTCAGTCTGCCATGACAACTCTCATATCGAAGTGCAAGAGTGCAAACAAGCCTTTGGTTGTGGCTGGATGTGTACCACAAGGAAGCCGGGATCTGAAAGAGCTTGAAGGTATTAGCGTTATTGGAGTGCAACAGATTGACCGCGTTGTTGAAGTTGTTGAAGAAACCTTAAAAGGCCATGAGGTTCGGTTGTTGAGTCGGAAAACACTGCCCTCACTTGATTTACCTAAGGTAAGGAAGAACAAATTTATCGAGATTCTTCCTATTAATGTTGGGTGTTTGGGTGCTTGCACATACTGCAAGACAAAGCATGCTCGTGGTCATCTTGGAAGCTATACTATAGAAAGTTTGGTAGATCGTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK101879             [                                                                                         CGTGCTGGGGCCGGCCGGGATCGCCGGCGGCGGGGCGGCTCCGGGGCTCCGTCTCCCGCTCGCCGCCGTCGCCGTGAAGCCCAAGCGTCCGAGATCG CCAGGGTCGCGCAGACCCGGCCGCAGCCCGAGGCCCGGATCCCCGGGACGCAGACGATATATGTGAAGACGTTCGGGTGCTCGCATAACCAGAGTGACAGTGAGTACATGTCAGGGCAGCTGTCAGCGTTTGGATATGCGATCACTGAAGAGCCCGAAGGAGCGGATTTGTGGCTAATTAACACATGCACTGTGAAAAACCCAAGTCAGTCTGCCATGACAACTCTCATATCGAAGTGCAAGAGTGCAAACAAGCCTTTGGTTGTGGCTGGATGTGTACCACAAGGAAGCCGGGATCTGAAAGAGCTTGAAGGTATTAGCGTTATTGGAGTGCAACAGATTGACCGCGTTGTTGAAGTTGTTGAAGAAACCTTAAAAGGCCATGAGGTTCGGTTGTTGAGTCGGAAAACACTGCCCTCACTTGATTTACCTAAGGTAAGGAAGAACAAATTTATCGAGATTCTTCCTATTAATGTTGGGTGTTTGGGTGCTTGCACATACTGCAAGACAAAGCATGCTCGTGGTCATCTTGGAAGCTATACTATAGAAAGTTTGGTAGATCGTGTGAAAATTGTTGTCTCTGAAGGTGTCCGAGAAATATGGTTGAGTAGTGAGGATACTGGTGCTTATGGCAGGGATATCGGTACAAATCTTCCAAATCTATTAAATGGAATTGCTGCTGAGCTTCCTGCGGACAGAAGCACGATGCTTCGCATTGGCATGACCAATCCTCCTTTCATATTGGAGCATTTGAAGGAGATTGCTAGTGTTTTGTGCCATCCCTGTGTTTATTCTTTCCTCCACGTTCCTGTACAATCAGGAAGTGATGCAGTTTTAACGGCAATGAATCGTGAATACACTGTGAGTGAATTCAGGAGGGTAGTTGACACTCTTTGTGAGCTTGTCCCTGGAATGCAAATT GCTACAGATATTATTTGT GGATTCCCCGGT GA GACT GATGAGG A TTTCTCTCAAACTGTTAACCTTGTAAAACAATATCTATTCCCTCAGGTTCACATATCACAATTCTACCCCAGACCAGGAACACCTGCTGCTAGGATGAAAAAGGTTCCAAGCGTTGAAGTGAAGAAAAGGAGCCGTGAATTGACCTCAGTTTTCGAGTCATTTTCACCCTACCAAGGAATGGAAGGCAAAGTAGAGAGGATATGGATCACTGAAATAGCTACTGATGGTGTTCATTTGGTTGGACATACCAAAGGATATATCCAGGTGCTTGTCATTGCTCCTGATAGCATGTTAGGAACATCAGCAGATGTGAAGATCACATCTGTTGGGAGATGGTCTGTGTTTGGTGAAGTGATAGAAGGATCCGTTGTAGCAAAGGAAACACAGAAGCATAATCACAGTGAACTGCAAGAAGAATACAGGCCAAGTCAGGTTGAGGAAGCCACTTGCTGCGGCACGGACTCTTGTGGTGCCTGCACATGCTCTGATGCAGCACAGCGATGCAATCCCGGTCCAGAGCGATCCGAAAATTCGACGCCCCAATCCTGTGGTGATGCTACTCATCAGGAAGCTGTTCAGTCTAAACTTGTGAGAAGAAATGTTGAAGGAGCGGTGAAAAGTAGCGAAAGTGATACAGCGAAACAGGTAGGGGAGATTCAGCGACTAAATGTAGCAGCTAGGAGGTTCCCAGATGTTGATACGATTCTGTGGGGTGGTTTGGCCGTGAGCTTTGCCACGACAGTAACCCTCATTGCACTGCTAGCTTACAAGATTTCTTCCACGCCCTCCTACTAGTAAGTCTGGTGCATGTGTAACTGTAGTTGAGCTGTGTGTTACTGCTCAGTTTTGACCATTTTTCTGTATCCATCCTCGATCCTTC                                                                                                                                                                ]
[+] EMBL AU056428             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTGTTGTCTCTGAAGGTGTCCGAGAAATATGGTTGAGTAGTGAGGATACTGGTGCTTATGGCAGGGATATCGGTACAAATCTTCCAAATCTATTAAATGGAATTGCTGCTGAGCTTCCTGCGGACAGAAGCACGATGCTTCGCATTGGCATGACCAATCCTCCTTTCATATTGGAGCATTTGAAGGAGATTGCTAGTGTTTTGTGCCATCCCTGTGTTTATTCTTTCCTCCACGTTCCTGTACAATCAGGAAGTGATGCAGTTTTAACGGCAATGAATCGTGAATACACTGTGAGTGAATTCAGGAGGGTAGTTGACACTCTTTGTGAGCTTGTCCCTGGAATGCAAATTGGCTACAGATATTATTTGTGGGATTCCCCGGTGGAGGACTGGATGAGGNATTTTCTCTCAAACTGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CB630437             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGATGGTGTTCATTTGGTTGGACATACCAAAGGATATATCCAGGTGCTTGTCATTGCTCCTGATAGCATGTTAGGAACATCAGCAGATGTGAAGATCACATCTGTTGGGAGATGGTCTGTGTTTGGTGAAGTGATAGAAGGATCCGTTGTAGCAAAGGAAACACAGAAGCATAATCACAGTGACCTGCAAGAAGAATACAGGCCAAGTCAGGTTGAGGAAGCCACTTGCTGCGGCACGGACTCTTGTGGTGCCTGCACATGCTCTGATGCAGCACAGCAATGCAATCCCGGTCCAGAGCGATCCGAAAATTCGACGCCCCAATCCTGTGGTGATGCTACTCATCAGGAAGCTGTTCAGTCTAAACTTGTGAGAAGATATGTTGAAGGAGCGGTGAAAAGTAGCGAAAGTGATACAGCGAAACAGGTAGGGGAGATTCAGCGACTAAATGTAGCAGCTAGGAGGTTCCCAGATGTTGATACGATTCTGTGGGGTGGTTTGGCCGTGAGCTTTGCCACGACAGTAACCCTCATTGCACTGGTAGCTTACAAGATTTCTTCCACGCCCTCCTACTAGTAAGTGTGGTGCATGCGTAACTGTAGTTGAGCTGTGTGTTACTGCTCAGTTTTGACCATTTTTTTGTATCCATCCTGGATCCTTCTGTTTGCCGCAAAGATATGCAATGGAACTGTAATTCATTATTTCAACAAGTTCTCTAATAACCTTTCCCCCCGACCTTTCTAAATAAGTAGAAGATACAATTAGTATTTTTAAGAGTAATGATGACCAAGGAGAGTTGGTGGTCTAAAAAAAAAAGAGAA]
[+] EMBL AU056429             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAGGAAGCTGTTCAGTCTAAACTTGTGAGAAGAAATGTTGAAGGANCGGTGAAAAGTAGCGAAAGTGATACAGCGAAACAGGTAGGGGAGATTCAGCGACTAAATGTAGCAGCTAGGAGGTTCCCAGATGTTGATACGATTCTGTGGGGTGGTTTGGCCGTGAGCTTTGCCACGACAGTAACCCTCATTGCACTGCTAGCTTACAAGATTTCTTCCACGCCCTCCTACTAGTAAGTCTGGTGCATGTGTAACTGTAGTTGAGCTGTGTGTTACTGCTCAGTTTTGACCATTTTTCTGTATCCATCCTCGATCCTTCTGTTTGCCGCAAAGATATGCAATGGAACTGTAATTCATTATCTCAACAAGTTCTCTAATAACCTTTCCCCCCGACCTTTCTAAATAACTAGAAGATACAATTAGTATTTTTAAGATTAATGATGAACAAaaa                            ]


>consensus_7808#0 ACGACGACTCGCCTGGACGCGCCGCCGCCGTCGCCGCCGCCGCCGCAGCAGCAGCAGCCG CCGGAGATGGAGATGGAGGACATCGAGGACGTGCTGGGGCCGGCCGGGATCGCCGGCGGC GGGGCGGCTCCGGGGCTCCGTCTCCCGCTCGCCGCCGTCGCCGTGAAGCCCAAGCGTCCG AGATCGTCCAGGGTCGCGCAGACCCGGCCGCAGCCCGAGGCCCGGATCCCCGGGACGCAG ACGATATATGTGAAGACGTTCGGGTGCTCGCATAACCAGAGTGACAGTGAGTACATGTCA GGGCAGCTGTCAGCGTTTGGATATGCGATCACTGAAGAGCCCGAAGGAGCGGATTTGTGG CTAATTAACACATGCACTGTGAAAAACCCAAGTCAGTCTGCCATGACAACTCTCATATCG AAGTGCAAGAGTGCAAACAAGCCTTTGGTTGTGGCTGGATGTGTACCACAAGGAAGCCGG GATCTGAAAGAGCTTGAAGGTATTAGCGTTATTGGAGTGCAACAGATTGACCGCGTTGTT GAAGTTGTTGAAGAAACCTTAAAAGGCCATGAGGTTCGGTTGTTGAGTCGGAAAACACTG CCCTCACTTGATTTACCTAAGGTAAGGAAGAACAAATTTATCGAGATTCTTCCTATTAAT GTTGGGTGTTTGGGTGCTTGCACATACTGCAAGACAAAGCATGCTCGTGGTCATCTTGGA AGCTATACTATAGAAAGTTTGGTAGATCGTGTGAAAATTGTTGTCTCTGAAGGTGTCCGA GAAATATGGTTGAGTAGTGAGGATACTGGTGCTTATGGCAGGGATATCGGTACAAATCTT CCAAATCTATTAAATGGAATTGCTGCTGAGCTTCCTGCGGACAGAAGCACGATGCTTCGC ATTGGCATGACCAATCCTCCTTTCATATTGGAGCATTTGAAGGAGATTGCTAGTGTTTTG TGCCATCCCTGTGTTTATTCTTTCCTCCACGTTCCTGTACAATCAGGAAGTGATGCAGTT TTAACGGCAATGAATCGTGAATACACTGTGAGTGAATTCAGGAGGGTAGTTGACACTCTT TGTGAGCTTGTCCCTGGAATGCAAATTGCTACAGATATTATTTGTGGATTCCCCGGTGAG ACTGATGAGGATTTCTCTCAAACTGTTAACCTTGTAAAACAATATCTATTCCCTCAGGTT CACATATCACAATTCTACCCCAGACCAGGAACACCTGCTGCTAGGATGAAAAAGGTTCCA AGCGTTGAAGTGAAGAAAAGGAGCCGTGAATTGACCTCAGTTTTCGAGTCATTTTCACCC TACCAAGGAATGGAAGGCAAAGTAGAGAGGATATGGATCACTGAAATAGCTACTGATGGT GTTCATTTGGTTGGACATACCAAAGGATATATCCAGGTGCTTGTCATTGCTCCTGATAGC ATGTTAGGAACATCAGCAGATGTGAAGATCACATCTGTTGGGAGATGGTCTGTGTTTGGT GAAGTGATAGAAGGATCCGTTGTAGCAAAGGAAACACAGAAGCATAATCACAGTGAACTG CAAGAAGAATACAGGCCAAGTCAGGTTGAGGAAGCCACTTGCTGCGGCACGGACTCTTGT GGTGCCTGCACATGCTCTGATGCAGCACAGCGATGCAATCCCGGTCCAGAGCGATCCGAA AATTCGACGCCCCAATCCTGTGGTGATGCTACTCATCAGGAAGCTGTTCAGTCTAAACTT GTGAGAAGAAATGTTGAAGGAGCGGTGAAAAGTAGCGAAAGTGATACAGCGAAACAGGTA GGGGAGATTCAGCGACTAAATGTAGCAGCTAGGAGGTTCCCAGATGTTGATACGATTCTG TGGGGTGGTTTGGCCGTGAGCTTTGCCACGACAGTAACCCTCATTGCACTGCTAGCTTAC AAGATTTCTTCCACGCCCTCCTACTAGTAAGTCTGGTGCATGTGTAACTGTAGTTGAGCT GTGTGTTACTGCTCAGTTTTGACCATTTTTCTGTATCCATCCTCGATCCTTCTGTTTGCC GCAAAGATATGCAATGGAACTGTAATTCATTATTTCAACAAGTTCTCTAATAACCTTTCC CCCCGACCTTTCTAAATAAGTAGAAGATACAATTAGTATTTTTAAGAGTAATGATGACCA AGGAGAGTTGGTGGTCTAAAAAAAAAAGAGAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)