These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7825#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 721 fasta sequence [ACTTCCACGCCCACCGTCGTCGACTCGTCGTCGCGCGAATTCCGCGGGAACAACGCGCCGCCGTCCGCCGTCCGCCGGCCGCCGTCTCCAGCCACAGATCGCCCCTCCACCCTGGCAGGAAACATGATCGTCTGCGTCGCCGTCGTCGGCCATCAGAACAACCCTCTGTACCTGCAGAGCTTCACGGAGGCGGACGACGCCCTCAAGCTCCACCACGTCGTGCACTGCTCCCTCGACGTCATCGACGAGCGAGTGAACAATCCTAAAAGGAATGCGCCTGCACTTAACGAGACATTTTTGGGTCTTCTATATCCGACCGAGAATTACAAAGTGTATGGCTATTTGACTAACACGAAGGTCAAATTTATCATGGTCACAACTGATCTTGATGTCAAAGATGCAGATGCCAGAAATTTTTTCAGGAAGTTCCATGCTGCATATGTAGACGCTGTTTCGAACCCCTTTCACGTTCCAGGGAAGAAGATTGCGTCAAGAAGCTTTGGTGCAAGAGTAAGCACAATTGTGAAATCCTTCGGTTCAGGGACAACTGCCTGAGTTCCACTTGTTCCAAATCCCCCCTTCAATCAAGCATTGTACCGTTCCCCTTTGTTGACAATTCATTTCTGAATCTCCATATTGTCCCCTGTATGCATGCTGAACAAGATGATAATTTGGCAATGAAAACAAAAAAGAAAAAGAAAATATGGTCTCGTTCAAAAAA] [+] EMBL AK060244 [ACTTCCACGCCCACCGTCGTCGACTCGTCGTCGCGCGAATTCCGCGGGAACAACGCGCCGCCGTCCGCCGTCCGCCGGCCGCCGTCTCCAGCCACAGATCGCCCCTCCACCCTGGCAGGAAACATGATCGTCTGCGTCGCCGTCGTCGGCCATCAGAACAACCCTCTGTACCTGCAGAGCTTCACGGAGGCGGACGACGCCCTCAAGCTCCACCACGTCGTGCACTGCTCCCTCGACGTCATCGACGAGCGAGTGAACAATCCTAAAAGGAATGCGCCTGCACTTAACGAGACATTTTTGGGTCTTCTATATCCGACCGAGAATTACAAAGTGTATGGCTATTTGACTAACACGAAGGTCAAATTTATCATGGTCACAACTGATCTTGATGTCAAAGATGCAGATGCCAGAAATTTTTTCAGGAAGTTCCATGCTGCATATGTAGACGCTGTTTCGAACCCCTTTCACGTTCCAGGGAAGAAGATTGCGTCAAGAAGCTTTGGTGCAAGAGTAAGCACAATTGTGAAATCCTTCGGTTCAGGGACGACTGCCTGAGTTCCACTTGTTCCAAATCCCCCCTTCAATCAAGCATTGTACCGTTCCCCTTTGTTGACAATTCATTTCTGAATCTCCATATTGTCCCCTGTATGCATGCTGAACAAGATGATAATTTGGCAATGAAAACAAAAAAGAAAAAGAAAATAT ] [+] EMBL CF291490 [ GCCCACCGTCGTCGACTCGTCGTCGCGCGAATTCCGCGGGAACAACGCGCCGCCGTCCGCCGTCCGCCGGCCGCCGTCTCCAGCCACAGATCGCCCCTCCACCCTGGCAGGAAACATGATCGTCTGCGTCGCCGTCGTCGGCCATCAGAACAACCCTCTGTACCTGCAGAGCTTCACGGAGGCGGACGACGCCCTCAAGCTCCACCACGTCGTGCACTGCTCCCTCGACGTCATCGACGAGCGAGTGAACAATCCTAAAAGGAATGCGCCTGCACTTAACGAGACATTTTTGGGTCTTCTATATCCGACCGAGAATTACAAAGTGTATGGCTATTTGACTAACACGAAGGTCAAATTTATCATGGTCACAACTGATCTTGATGTCAAAGATGCAGATGCCAGAAATTTTTTCAGGAAGTTCCATGCTGCATATGTAGACGCTGTTTCGAACCCCTTTCACGTTCCAGGGAAGAAGATTGCGTCAAGAAGCTTTGGTGCAAGAGTAAGCACAATTGTGAAATCCTTCGGTTCAGGGACAACTGCCTGAGTTCCACTTGTTCCAAATCCCCCCTTCAATCAAGCATTGTACCGTTCCCCTTTGTTGACAATTCATTTCTGAATCTCCATATTGTCCCCTGTATGCATGCTGAACAAGAT ] [-] EMBL CF291491 [ CGTCGTGCACTGCTCCCTCGACGTCATCGACGAGCGAGTGAACAATCCTAAAAGGAATGCGCCTGCACTTAACGAGACATTTTTGGGTCTTCTATATCCGACCGAGAATTACAAAGTGTATGGCTATTTGACTAACACGAAGGTCAAATTTATCATGGTCACAACTGATCTTGATGTCAAAGATGCAGATGCCAGAAATTTTTTCAGGAAGTTCCATGCTGCATATGTAGACGCTGTTTCGAACCCCTTTCACGTTCCAGGGAAGAAGATTGCGTCAAGAAGCTTTGGTGCAAGAGTAAGCACAATTGTGAAATCCTTCGGTTCAGGGACAACTGCCTGAGTTCCACTTGTTCCAAATCCCCCCTTCAATCAAGCATTGTACCGTTCCCCTTTGTTGACAATTCATTTCTGAATCTCCATATTGTCCCCTGTATGCATGCTGAACAAGATGATAATTTGGCAATGAAAACAAAAAAGAAAAAGAAAATATGGTCTCGTTCAAAAAA] consensusID : consensus_7825#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 694 fasta sequence [CAGAGGACGAGACAAGGGGGGCGCGAATTCCGGCGGGAACAACGNGCCGCCGTCTCCAGCCACAGATCGCCCCTCCCACCCTGGCAGGAAACATGATTGTTTGNGTTGCCGTCGTCGGCCATCAGAACAACCCTCTGTACCTGCAGAGCTTCACGGAGGCGGACGACGCCCTCAAGCTCCACCACGTCGTGCACTGCTCCCTNGACGTCATCGACGAGCGAGTGAACAATCCTAAAAGGAATGCGCCTGCACTTAACGAGACATTTTTGGGTCTTCTATATCCGACCGAGAATTACAAAGTGTATGGCTATTTGACTAACACGAAGGTCAAATTTATCATGGTCACAACTGATCTTGATGTCAAAGATGCAGATGCCAGAAATTTTTTCAGGAAGTTCCATGCTGCATATGTAGACGCTGTTTCGAACCCCTTTCACGTTCCAGGGAAGAAGATTGCGTCAAGAAGCTTTGGTGCAAGAGTAAGCACAATTGTGAAATCCTTCGGTTCAGGGACAACTGCCTGAGTTCCACTTGTTCCAAATCCCCCCTTCAATCAAGCATTGTACCGTTCCCCTTTGTTGACAATTCATTTCTGAATCTCCATATTGTCCCCTGTATGCATGCTGAACAAGATGATAATTTGGCAATGAAAACAAAAAAGAAAAAGAAAATATGGTCTCGTTCAAAAAAAAAA] [-] EMBL CA762574 [CAGAGGACGAGACAAGGGGGGCGCGAATTCCGGCGGGAACAACGNGCCGCCGTCTCCAGCCACAGATCGCCCCTCCCACCCTGGCAGGAAACATGATTGTTTGNGTTGCCGTCGTCGGCCATCAGAACAACCCTCTGTACCTGCAGAGCTTCACGGAGGCGGACGACGCCCTCAAGCTCCACCACGTCGTGCACTGCTCCCTNGACGTCATCGACGAGCGAGTGAACAATCCTAAAAGGAATGCGCCTGCACTTAACGAGACATTTTTGGGTCTTCTATATCCGACCGAGAATTACAAAGTGTATGGCTATTTGACTAACACGAAGGTCAAATTTATCATGGTCACAACTGATCTTGATGTCAAAGATGCAGATGCCAGAAATTTTTTCAGGAAGTTCCATGCTGCATATGTAGACGCTGTTTCGAACCCCTTTCACGTTCCAGGGAAGAAGATTGCGTCAAGAAGCTTTGGTGCAAGAGTAAGCACAATTGTGAAATCCTTCGGTTCAGGGACAACTGCCTGAGTTCCACTTGTTCCAAATCCCCCCTTCAATCAAGCATTGTACCGTTCCCCTTTGTTGACAATTCATTTCTGAATCTCCATATTGTCCCCTGTATGCATGCTGAACAAGATGATAATTTGGCAATGAAAACAAAAAAGAAAAAGAAAATATGGTCTCGTTCAAAAAAAAAA] [+] EMBL CA765659 [ TTCC GCGGGAACAACGCGCCGCCGTCTCCAGCCACAGATCGCCCCT CCACCCTGGCAGGAAACATGATCGTCTGCGTCGCCGTCGTCGGCCATCAGAACAACCCTCTGTACCTGCAGAGCTTCACGGAGGCGGACGACGCCCTCAAGCTCCACCACGTCGTGCACTGCTCCCTCGACGTCATCGACGAGCGAGTGAACAATCCTAAAAGGAATGCGCCTGCACTTAACGAGACATTTTTGGGTCTTCTATATCCGACCGAGAATTACAAAGTGTATGGCTATTTGACTAACACGAAGGTCAAATTTATCATGGTCACAACTGATCTTGATGTCAAAGATGCAGATGCCAGAAATTTTTTCAGGAAGTTCCATGCTGCATATGTAGACGCTGTTTCGAACCCCTTTCACGTTCCAGGGAAGAAGATTGCGTCAAGAAGCTTTGGTGCAAGAGTAAGCACAATTGTGAAATCCTTCGGTTCAGGGACAACTGCCTGAGTTCCACTTGTTCCAAATCCCCCCTTCAATCAAGCATTGTACCGTTCCCCTTTGTTGACAATTCATTTCTGAATCTCCATATTGTCCCCTGTATGCATGCTGAACAAGATGATAATTTGGCAATGAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7825#0 ACTTCCACGCCCACCGTCGTCGACTCGTCGTCGCGCGAATTCCGCGGGAACAACGCGCCG 60 consensus_7825#1 --------------------------------CAGAGGACGAGACAAGGGGGGCGCGAAT 28 * * * * * **** consensus_7825#0 CCGTCCGCCGTCCGCCGGCCGCCGTCTCCAGCCACAGATCGCCCCTCC-ACCCTGGCAGG 119 consensus_7825#1 TCCGGCGGGAACAACGNGCCGCCGTCTCCAGCCACAGATCGCCCCTCCCACCCTGGCAGG 88 * ** * * ******************************* *********** consensus_7825#0 AAACATGATCGTCTGCGTCGCCGTCGTCGGCCATCAGAACAACCCTCTGTACCTGCAGAG 179 consensus_7825#1 AAACATGATTGTTTGNGTTGCCGTCGTCGGCCATCAGAACAACCCTCTGTACCTGCAGAG 148 ********* ** ** ** ***************************************** consensus_7825#0 CTTCACGGAGGCGGACGACGCCCTCAAGCTCCACCACGTCGTGCACTGCTCCCTCGACGT 239 consensus_7825#1 CTTCACGGAGGCGGACGACGCCCTCAAGCTCCACCACGTCGTGCACTGCTCCCTNGACGT 208 ****************************************************** ***** consensus_7825#0 CATCGACGAGCGAGTGAACAATCCTAAAAGGAATGCGCCTGCACTTAACGAGACATTTTT 299 consensus_7825#1 CATCGACGAGCGAGTGAACAATCCTAAAAGGAATGCGCCTGCACTTAACGAGACATTTTT 268 ************************************************************ consensus_7825#0 GGGTCTTCTATATCCGACCGAGAATTACAAAGTGTATGGCTATTTGACTAACACGAAGGT 359 consensus_7825#1 GGGTCTTCTATATCCGACCGAGAATTACAAAGTGTATGGCTATTTGACTAACACGAAGGT 328 ************************************************************ consensus_7825#0 CAAATTTATCATGGTCACAACTGATCTTGATGTCAAAGATGCAGATGCCAGAAATTTTTT 419 consensus_7825#1 CAAATTTATCATGGTCACAACTGATCTTGATGTCAAAGATGCAGATGCCAGAAATTTTTT 388 ************************************************************ consensus_7825#0 CAGGAAGTTCCATGCTGCATATGTAGACGCTGTTTCGAACCCCTTTCACGTTCCAGGGAA 479 consensus_7825#1 CAGGAAGTTCCATGCTGCATATGTAGACGCTGTTTCGAACCCCTTTCACGTTCCAGGGAA 448 ************************************************************ consensus_7825#0 GAAGATTGCGTCAAGAAGCTTTGGTGCAAGAGTAAGCACAATTGTGAAATCCTTCGGTTC 539 consensus_7825#1 GAAGATTGCGTCAAGAAGCTTTGGTGCAAGAGTAAGCACAATTGTGAAATCCTTCGGTTC 508 ************************************************************ consensus_7825#0 AGGGACAACTGCCTGAGTTCCACTTGTTCCAAATCCCCCCTTCAATCAAGCATTGTACCG 599 consensus_7825#1 AGGGACAACTGCCTGAGTTCCACTTGTTCCAAATCCCCCCTTCAATCAAGCATTGTACCG 568 ************************************************************ consensus_7825#0 TTCCCCTTTGTTGACAATTCATTTCTGAATCTCCATATTGTCCCCTGTATGCATGCTGAA 659 consensus_7825#1 TTCCCCTTTGTTGACAATTCATTTCTGAATCTCCATATTGTCCCCTGTATGCATGCTGAA 628 ************************************************************ consensus_7825#0 CAAGATGATAATTTGGCAATGAAAACAAAAAAGAAAAAGAAAATATGGTCTCGTTCAAAA 719 consensus_7825#1 CAAGATGATAATTTGGCAATGAAAACAAAAAAGAAAAAGAAAATATGGTCTCGTTCAAAA 688 ************************************************************ consensus_7825#0 AA---- 721 consensus_7825#1 AAAAAA 694 ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||