cluster # 7825

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Oryza sativa
cluster # 7825 cluster # 7825 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7825#0 length = 721 sequences # 3

consensus_7825#1 length = 694 sequences # 2

consensusID : consensus_7825#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 721
fasta sequence

                              [ACTTCCACGCCCACCGTCGTCGACTCGTCGTCGCGCGAATTCCGCGGGAACAACGCGCCGCCGTCCGCCGTCCGCCGGCCGCCGTCTCCAGCCACAGATCGCCCCTCCACCCTGGCAGGAAACATGATCGTCTGCGTCGCCGTCGTCGGCCATCAGAACAACCCTCTGTACCTGCAGAGCTTCACGGAGGCGGACGACGCCCTCAAGCTCCACCACGTCGTGCACTGCTCCCTCGACGTCATCGACGAGCGAGTGAACAATCCTAAAAGGAATGCGCCTGCACTTAACGAGACATTTTTGGGTCTTCTATATCCGACCGAGAATTACAAAGTGTATGGCTATTTGACTAACACGAAGGTCAAATTTATCATGGTCACAACTGATCTTGATGTCAAAGATGCAGATGCCAGAAATTTTTTCAGGAAGTTCCATGCTGCATATGTAGACGCTGTTTCGAACCCCTTTCACGTTCCAGGGAAGAAGATTGCGTCAAGAAGCTTTGGTGCAAGAGTAAGCACAATTGTGAAATCCTTCGGTTCAGGGACAACTGCCTGAGTTCCACTTGTTCCAAATCCCCCCTTCAATCAAGCATTGTACCGTTCCCCTTTGTTGACAATTCATTTCTGAATCTCCATATTGTCCCCTGTATGCATGCTGAACAAGATGATAATTTGGCAATGAAAACAAAAAAGAAAAAGAAAATATGGTCTCGTTCAAAAAA]

[+] EMBL AK060244             [ACTTCCACGCCCACCGTCGTCGACTCGTCGTCGCGCGAATTCCGCGGGAACAACGCGCCGCCGTCCGCCGTCCGCCGGCCGCCGTCTCCAGCCACAGATCGCCCCTCCACCCTGGCAGGAAACATGATCGTCTGCGTCGCCGTCGTCGGCCATCAGAACAACCCTCTGTACCTGCAGAGCTTCACGGAGGCGGACGACGCCCTCAAGCTCCACCACGTCGTGCACTGCTCCCTCGACGTCATCGACGAGCGAGTGAACAATCCTAAAAGGAATGCGCCTGCACTTAACGAGACATTTTTGGGTCTTCTATATCCGACCGAGAATTACAAAGTGTATGGCTATTTGACTAACACGAAGGTCAAATTTATCATGGTCACAACTGATCTTGATGTCAAAGATGCAGATGCCAGAAATTTTTTCAGGAAGTTCCATGCTGCATATGTAGACGCTGTTTCGAACCCCTTTCACGTTCCAGGGAAGAAGATTGCGTCAAGAAGCTTTGGTGCAAGAGTAAGCACAATTGTGAAATCCTTCGGTTCAGGGACGACTGCCTGAGTTCCACTTGTTCCAAATCCCCCCTTCAATCAAGCATTGTACCGTTCCCCTTTGTTGACAATTCATTTCTGAATCTCCATATTGTCCCCTGTATGCATGCTGAACAAGATGATAATTTGGCAATGAAAACAAAAAAGAAAAAGAAAATAT                ]
[+] EMBL CF291490             [        GCCCACCGTCGTCGACTCGTCGTCGCGCGAATTCCGCGGGAACAACGCGCCGCCGTCCGCCGTCCGCCGGCCGCCGTCTCCAGCCACAGATCGCCCCTCCACCCTGGCAGGAAACATGATCGTCTGCGTCGCCGTCGTCGGCCATCAGAACAACCCTCTGTACCTGCAGAGCTTCACGGAGGCGGACGACGCCCTCAAGCTCCACCACGTCGTGCACTGCTCCCTCGACGTCATCGACGAGCGAGTGAACAATCCTAAAAGGAATGCGCCTGCACTTAACGAGACATTTTTGGGTCTTCTATATCCGACCGAGAATTACAAAGTGTATGGCTATTTGACTAACACGAAGGTCAAATTTATCATGGTCACAACTGATCTTGATGTCAAAGATGCAGATGCCAGAAATTTTTTCAGGAAGTTCCATGCTGCATATGTAGACGCTGTTTCGAACCCCTTTCACGTTCCAGGGAAGAAGATTGCGTCAAGAAGCTTTGGTGCAAGAGTAAGCACAATTGTGAAATCCTTCGGTTCAGGGACAACTGCCTGAGTTCCACTTGTTCCAAATCCCCCCTTCAATCAAGCATTGTACCGTTCCCCTTTGTTGACAATTCATTTCTGAATCTCCATATTGTCCCCTGTATGCATGCTGAACAAGAT                                                        ]
[-] EMBL CF291491             [                                                                                                                                                                                                                       CGTCGTGCACTGCTCCCTCGACGTCATCGACGAGCGAGTGAACAATCCTAAAAGGAATGCGCCTGCACTTAACGAGACATTTTTGGGTCTTCTATATCCGACCGAGAATTACAAAGTGTATGGCTATTTGACTAACACGAAGGTCAAATTTATCATGGTCACAACTGATCTTGATGTCAAAGATGCAGATGCCAGAAATTTTTTCAGGAAGTTCCATGCTGCATATGTAGACGCTGTTTCGAACCCCTTTCACGTTCCAGGGAAGAAGATTGCGTCAAGAAGCTTTGGTGCAAGAGTAAGCACAATTGTGAAATCCTTCGGTTCAGGGACAACTGCCTGAGTTCCACTTGTTCCAAATCCCCCCTTCAATCAAGCATTGTACCGTTCCCCTTTGTTGACAATTCATTTCTGAATCTCCATATTGTCCCCTGTATGCATGCTGAACAAGATGATAATTTGGCAATGAAAACAAAAAAGAAAAAGAAAATATGGTCTCGTTCAAAAAA]




>consensus_7825#0
ACTTCCACGCCCACCGTCGTCGACTCGTCGTCGCGCGAATTCCGCGGGAACAACGCGCCG
CCGTCCGCCGTCCGCCGGCCGCCGTCTCCAGCCACAGATCGCCCCTCCACCCTGGCAGGA
AACATGATCGTCTGCGTCGCCGTCGTCGGCCATCAGAACAACCCTCTGTACCTGCAGAGC
TTCACGGAGGCGGACGACGCCCTCAAGCTCCACCACGTCGTGCACTGCTCCCTCGACGTC
ATCGACGAGCGAGTGAACAATCCTAAAAGGAATGCGCCTGCACTTAACGAGACATTTTTG
GGTCTTCTATATCCGACCGAGAATTACAAAGTGTATGGCTATTTGACTAACACGAAGGTC
AAATTTATCATGGTCACAACTGATCTTGATGTCAAAGATGCAGATGCCAGAAATTTTTTC
AGGAAGTTCCATGCTGCATATGTAGACGCTGTTTCGAACCCCTTTCACGTTCCAGGGAAG
AAGATTGCGTCAAGAAGCTTTGGTGCAAGAGTAAGCACAATTGTGAAATCCTTCGGTTCA
GGGACAACTGCCTGAGTTCCACTTGTTCCAAATCCCCCCTTCAATCAAGCATTGTACCGT
TCCCCTTTGTTGACAATTCATTTCTGAATCTCCATATTGTCCCCTGTATGCATGCTGAAC
AAGATGATAATTTGGCAATGAAAACAAAAAAGAAAAAGAAAATATGGTCTCGTTCAAAAA
A

consensusID : consensus_7825#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 694
fasta sequence

                              [CAGAGGACGAGACAAGGGGGGCGCGAATTCCGGCGGGAACAACGNGCCGCCGTCTCCAGCCACAGATCGCCCCTCCCACCCTGGCAGGAAACATGATTGTTTGNGTTGCCGTCGTCGGCCATCAGAACAACCCTCTGTACCTGCAGAGCTTCACGGAGGCGGACGACGCCCTCAAGCTCCACCACGTCGTGCACTGCTCCCTNGACGTCATCGACGAGCGAGTGAACAATCCTAAAAGGAATGCGCCTGCACTTAACGAGACATTTTTGGGTCTTCTATATCCGACCGAGAATTACAAAGTGTATGGCTATTTGACTAACACGAAGGTCAAATTTATCATGGTCACAACTGATCTTGATGTCAAAGATGCAGATGCCAGAAATTTTTTCAGGAAGTTCCATGCTGCATATGTAGACGCTGTTTCGAACCCCTTTCACGTTCCAGGGAAGAAGATTGCGTCAAGAAGCTTTGGTGCAAGAGTAAGCACAATTGTGAAATCCTTCGGTTCAGGGACAACTGCCTGAGTTCCACTTGTTCCAAATCCCCCCTTCAATCAAGCATTGTACCGTTCCCCTTTGTTGACAATTCATTTCTGAATCTCCATATTGTCCCCTGTATGCATGCTGAACAAGATGATAATTTGGCAATGAAAACAAAAAAGAAAAAGAAAATATGGTCTCGTTCAAAAAAAAAA]

[-] EMBL CA762574             [CAGAGGACGAGACAAGGGGGGCGCGAATTCCGGCGGGAACAACGNGCCGCCGTCTCCAGCCACAGATCGCCCCTCCCACCCTGGCAGGAAACATGATTGTTTGNGTTGCCGTCGTCGGCCATCAGAACAACCCTCTGTACCTGCAGAGCTTCACGGAGGCGGACGACGCCCTCAAGCTCCACCACGTCGTGCACTGCTCCCTNGACGTCATCGACGAGCGAGTGAACAATCCTAAAAGGAATGCGCCTGCACTTAACGAGACATTTTTGGGTCTTCTATATCCGACCGAGAATTACAAAGTGTATGGCTATTTGACTAACACGAAGGTCAAATTTATCATGGTCACAACTGATCTTGATGTCAAAGATGCAGATGCCAGAAATTTTTTCAGGAAGTTCCATGCTGCATATGTAGACGCTGTTTCGAACCCCTTTCACGTTCCAGGGAAGAAGATTGCGTCAAGAAGCTTTGGTGCAAGAGTAAGCACAATTGTGAAATCCTTCGGTTCAGGGACAACTGCCTGAGTTCCACTTGTTCCAAATCCCCCCTTCAATCAAGCATTGTACCGTTCCCCTTTGTTGACAATTCATTTCTGAATCTCCATATTGTCCCCTGTATGCATGCTGAACAAGATGATAATTTGGCAATGAAAACAAAAAAGAAAAAGAAAATATGGTCTCGTTCAAAAAAAAAA]
[+] EMBL CA765659             [                           TTCC GCGGGAACAACGCGCCGCCGTCTCCAGCCACAGATCGCCCCT CCACCCTGGCAGGAAACATGATCGTCTGCGTCGCCGTCGTCGGCCATCAGAACAACCCTCTGTACCTGCAGAGCTTCACGGAGGCGGACGACGCCCTCAAGCTCCACCACGTCGTGCACTGCTCCCTCGACGTCATCGACGAGCGAGTGAACAATCCTAAAAGGAATGCGCCTGCACTTAACGAGACATTTTTGGGTCTTCTATATCCGACCGAGAATTACAAAGTGTATGGCTATTTGACTAACACGAAGGTCAAATTTATCATGGTCACAACTGATCTTGATGTCAAAGATGCAGATGCCAGAAATTTTTTCAGGAAGTTCCATGCTGCATATGTAGACGCTGTTTCGAACCCCTTTCACGTTCCAGGGAAGAAGATTGCGTCAAGAAGCTTTGGTGCAAGAGTAAGCACAATTGTGAAATCCTTCGGTTCAGGGACAACTGCCTGAGTTCCACTTGTTCCAAATCCCCCCTTCAATCAAGCATTGTACCGTTCCCCTTTGTTGACAATTCATTTCTGAATCTCCATATTGTCCCCTGTATGCATGCTGAACAAGATGATAATTTGGCAATGAA                                           ]




>consensus_7825#1
CAGAGGACGAGACAAGGGGGGCGCGAATTCCGGCGGGAACAACGNGCCGCCGTCTCCAGC
CACAGATCGCCCCTCCCACCCTGGCAGGAAACATGATTGTTTGNGTTGCCGTCGTCGGCC
ATCAGAACAACCCTCTGTACCTGCAGAGCTTCACGGAGGCGGACGACGCCCTCAAGCTCC
ACCACGTCGTGCACTGCTCCCTNGACGTCATCGACGAGCGAGTGAACAATCCTAAAAGGA
ATGCGCCTGCACTTAACGAGACATTTTTGGGTCTTCTATATCCGACCGAGAATTACAAAG
TGTATGGCTATTTGACTAACACGAAGGTCAAATTTATCATGGTCACAACTGATCTTGATG
TCAAAGATGCAGATGCCAGAAATTTTTTCAGGAAGTTCCATGCTGCATATGTAGACGCTG
TTTCGAACCCCTTTCACGTTCCAGGGAAGAAGATTGCGTCAAGAAGCTTTGGTGCAAGAG
TAAGCACAATTGTGAAATCCTTCGGTTCAGGGACAACTGCCTGAGTTCCACTTGTTCCAA
ATCCCCCCTTCAATCAAGCATTGTACCGTTCCCCTTTGTTGACAATTCATTTCTGAATCT
CCATATTGTCCCCTGTATGCATGCTGAACAAGATGATAATTTGGCAATGAAAACAAAAAA
GAAAAAGAAAATATGGTCTCGTTCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7825#0      ACTTCCACGCCCACCGTCGTCGACTCGTCGTCGCGCGAATTCCGCGGGAACAACGCGCCG 60
consensus_7825#1      --------------------------------CAGAGGACGAGACAAGGGGGGCGCGAAT 28
                                                        * * *     *  *     ****   

consensus_7825#0      CCGTCCGCCGTCCGCCGGCCGCCGTCTCCAGCCACAGATCGCCCCTCC-ACCCTGGCAGG 119
consensus_7825#1      TCCGGCGGGAACAACGNGCCGCCGTCTCCAGCCACAGATCGCCCCTCCCACCCTGGCAGG 88
                       *   **    *  *  ******************************* ***********

consensus_7825#0      AAACATGATCGTCTGCGTCGCCGTCGTCGGCCATCAGAACAACCCTCTGTACCTGCAGAG 179
consensus_7825#1      AAACATGATTGTTTGNGTTGCCGTCGTCGGCCATCAGAACAACCCTCTGTACCTGCAGAG 148
                      ********* ** ** ** *****************************************

consensus_7825#0      CTTCACGGAGGCGGACGACGCCCTCAAGCTCCACCACGTCGTGCACTGCTCCCTCGACGT 239
consensus_7825#1      CTTCACGGAGGCGGACGACGCCCTCAAGCTCCACCACGTCGTGCACTGCTCCCTNGACGT 208
                      ****************************************************** *****

consensus_7825#0      CATCGACGAGCGAGTGAACAATCCTAAAAGGAATGCGCCTGCACTTAACGAGACATTTTT 299
consensus_7825#1      CATCGACGAGCGAGTGAACAATCCTAAAAGGAATGCGCCTGCACTTAACGAGACATTTTT 268
                      ************************************************************

consensus_7825#0      GGGTCTTCTATATCCGACCGAGAATTACAAAGTGTATGGCTATTTGACTAACACGAAGGT 359
consensus_7825#1      GGGTCTTCTATATCCGACCGAGAATTACAAAGTGTATGGCTATTTGACTAACACGAAGGT 328
                      ************************************************************

consensus_7825#0      CAAATTTATCATGGTCACAACTGATCTTGATGTCAAAGATGCAGATGCCAGAAATTTTTT 419
consensus_7825#1      CAAATTTATCATGGTCACAACTGATCTTGATGTCAAAGATGCAGATGCCAGAAATTTTTT 388
                      ************************************************************

consensus_7825#0      CAGGAAGTTCCATGCTGCATATGTAGACGCTGTTTCGAACCCCTTTCACGTTCCAGGGAA 479
consensus_7825#1      CAGGAAGTTCCATGCTGCATATGTAGACGCTGTTTCGAACCCCTTTCACGTTCCAGGGAA 448
                      ************************************************************

consensus_7825#0      GAAGATTGCGTCAAGAAGCTTTGGTGCAAGAGTAAGCACAATTGTGAAATCCTTCGGTTC 539
consensus_7825#1      GAAGATTGCGTCAAGAAGCTTTGGTGCAAGAGTAAGCACAATTGTGAAATCCTTCGGTTC 508
                      ************************************************************

consensus_7825#0      AGGGACAACTGCCTGAGTTCCACTTGTTCCAAATCCCCCCTTCAATCAAGCATTGTACCG 599
consensus_7825#1      AGGGACAACTGCCTGAGTTCCACTTGTTCCAAATCCCCCCTTCAATCAAGCATTGTACCG 568
                      ************************************************************

consensus_7825#0      TTCCCCTTTGTTGACAATTCATTTCTGAATCTCCATATTGTCCCCTGTATGCATGCTGAA 659
consensus_7825#1      TTCCCCTTTGTTGACAATTCATTTCTGAATCTCCATATTGTCCCCTGTATGCATGCTGAA 628
                      ************************************************************

consensus_7825#0      CAAGATGATAATTTGGCAATGAAAACAAAAAAGAAAAAGAAAATATGGTCTCGTTCAAAA 719
consensus_7825#1      CAAGATGATAATTTGGCAATGAAAACAAAAAAGAAAAAGAAAATATGGTCTCGTTCAAAA 688
                      ************************************************************

consensus_7825#0      AA---- 721
consensus_7825#1      AAAAAA 694
                      **