These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7831#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 708 fasta sequence [ACATGGGACTGAAGGAGTAGAAAGTCGCGTCCCACCACGTCTCTCTCTCCTACTGTTTTCTCACCCAAAGATCC-GATTTTCACCAACTAAACCCGCTCCGATCAACGGC-GCAGCCAAGCCGGCGC-GCGTTCCAGGCAATGGCCGTCGAGACGGACAC-GGC-GAGGGC-GGCGGTGTCGTCCGAGACGGCGCCGATGTCGCCGCAGGCCGAGGCGGCGCCGCGCGCCGCCACGGCGCGCCGCGGGAACTGGCTGCGGCGCCTCATACCGCGGGACTACCTGTCGCTCAGCCGGCGCTGGAAGCTGGGCGGCGGCGCCTTCGCCGCGCCCGGCGGCGGCGCGGCGTCGAGGAGGCTGGCGTCGCTGTCGCGGTCGCTCCGGTGGAAGCGGCGGCTCCCGGGGTTCTCCCTGACCCTGCGGAGCGGCTCGGCGTCGGCGGTGGTCGACGCGGTTGCGTTCCGCGTCATGTACGTCGTGGAGGCCGTCGTGCTCGGCCTCGCGCTCTCCTGCTTCTTCCTCTGCTGCGGCTGCCACCTCTAACCTCTCCTCTCTTCACACCACGCCATAATCGGGCGTGCAACAGCTGCAACCATCTTAATTTTCCCTGCTTTTTTTTTCTTTTTTGTTCTTCTCTTGATGCTTCCGCTGTAAATTTCTACTACCTACCTTTCGGTGCTAAGATTGAAATTTGCAATCTGCAAACTGCAAAAAA] [+] EMBL CF339185 [ACATGGGACTGAAGGAGTAGAAAGTCGCGTCCCACCACGTCTCTCTCTCCTACTGTTTTCTCACCCAAAGATCC GATTTTCACCAACTAAACCCGCTCCGATCAACGGC GCAGCCAAGCCGGCGC GCGTTCCAGGCAATGGCCGTCGAGACGGACAC GGC GAGGGC GGCGGTGTCGTCCTATACGGCGCCGATGTCGCCGCAGGCCGAGGCGG ] [+] EMBL AU181546 [ CTCTCTCCTACTGTTTTCTCACCCAAAGATCCAGATTTTCACCAACTAAACCCGCTCCGATCAACGGCAGCAGCCAAGCCGGCGCAGCGTTCCAGGCAATGGCCGTCGAGACGGACACAGGCNGAGGGCAGGCGGTGTCGTCCGAGACGGCGCCGATGTCGCCGCAGGCCGAGGCGGCGCCGCGCGCCGCCACGGCGCGCCGCGGGAACTGGCTGCGGCGCCTCATACCGCGGGACTACCTGTCGCTCAGCCGGCGCTGGAAGCTGGGCGGCGGCGCCTTCGCCGCGCCCGGCGGCGGCGCGGCGTCGAGGAGGCTGGCGTCGCTGTCGCGGTCGCTCCGGTGGAAGCGGCGGCTCCCGGGGTTCTCCCTGACCCTGCGGAGCGGCTCGGCGTCGGCGGTGGTCGACGCGGTTGCGTTCCGCGTCATG ] [+] EMBL CF338277 [ CTCTCCTACTGTTTTCTCACCCAAAGATCC GATTTTCACCAACTAAACCCGCTCCGATCAACGGC GCAGCCAAGCCGGCGC GCGTTCCAGGCAATGGCCGTCGAGACGGACAC GGC GAGGGC GGCGGTGTCGTCCGAGACTGCGCCGATGTCGCCGCAGGCCGAGGCGGC ] [+] EMBL AU181547 [ CTACCTGTCGCTCAGCCGGCGCTGGAAGCTGGGCGGCGGCGCCTTCGCCGCGCCCGGCGGCGGCGCGGCGTCGAGGAGGCTGGCGTCGCTGTCGCGGTCGCTCCGGTGGAAGCGGCGGCTCCCGGGGTTCTCCCTGACCCTGCGGAGCGGCTCGGCGTCGGCGGTGGTCGACGCGGTTGCGTTCCGCGTCATGTACGTCGTGGAGGCCGTCGTGCTCGGCCTCGCGCTCTCCTGCTTCTTCCTCTGCTGCGGCTGCCACCTCTAACCTCTCCTCTCTTCACACCACGCCATAATCGGGCGTGCAACAGCTGCAACCATCTTAATTTTCCCTGCTTTTTTTTTCTTTTTTGTTCTTCTCTTGATGCTTCCGCTGTAAATTTCTACTACCTACCTTTCGGTGCTAAGATTGAAATTTGCAATCTGCAAACTGCAAAAAA] consensusID : consensus_7831#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 221 fasta sequence [TTTTTTAATGTAAGATGATCTCCGTTAAATCGTACGGATTTAATTAAGGGCGCAGATTTACAACACGATCGAACTAATTAACCACAAGCAAAAAAATTACATACATGCATGATGGTTACGAACGCGGCCAGCTGCGGCGAGCAGAATTGGTTTAAATCTGGCAGCCGCAGCAGCAGAAGAAGCAGGAGAGCGCGAGGCCGAGCACGACGGCCTCCACCACG] [+] EMBL CF323272 [TTTTTTAATGTAAGATGATCTCCGTTAAATCGTACGGATTTAATTAAGGGCGCAGATTTACAACACGATCGAACTAATTAACCACAAGCAAAAAAATTACATACATGCATGATGGTTACGAACGCGGCCAGCTGCGGCGAGCAGAATTGGTTTAAATCTGGCAGCCGCAGCAGCAGAAGAAGCAGGAGAGCGCGAGGCCGAGCACGACGGCCTCCACCACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7831#0 ACATGGGACTGAAGGAGTAGAAAGTCGCGTCCCACCACGTCTCTCTCTCCTACTGTTTTC 60 consensus_7831#1 --------------------------------------------------------TTTT 4 *** consensus_7831#0 TCACCCAAAGATCCGATTTTCACCAACTAAACCCGCTCCGATCAACGGCGCAGCCAAGCC 120 consensus_7831#1 TTAATGTAAGAT--GATCTCCGTTAAATCGTACGGATTTAATTAAGGGCGCAG---ATTT 59 * * ***** *** * * ** * * * * ** ** ******* * consensus_7831#0 GGCGCGCGTTCCAGGCAATGGCCGTCGAGACGGACACGGCGAGGGCGGCGGTGTCGTCCG 180 consensus_7831#1 ACAACACGATCGAACTAATTAACCACAAG-CAAAAAAATTACATACATGCATGATGGTTA 118 * ** ** * *** * * ** * * * * ** * consensus_7831#0 AGACGGCGCCGATGTCGCCGCAGGCCGAGGCGGCGCCGCGC--GCCGCCACGGCGCGCCG 238 consensus_7831#1 CGAACGCGGCCA-GCTGCGGCGAGCAGAATTGGTTTAAATCTGGCAGCCGCAGCA-GCAG 176 ** *** * * * ** ** ** ** ** * ** *** * ** ** * consensus_7831#0 CGGGAACTGGCTGCGGCGCCTCATACCGCGGGACTACCTGTCGCTCAGCCGGCGCTGGAA 298 consensus_7831#1 AAGAAGCAGGAGAGCGCGAGGCCGAGCACGACGGCCTCCACCACG--------------- 221 * * * ** *** * * * ** * * * consensus_7831#0 GCTGGGCGGCGGCGCCTTCGCCGCGCCCGGCGGCGGCGCGGCGTCGAGGAGGCTGGCGTC 358 consensus_7831#1 ------------------------------------------------------------ consensus_7831#0 GCTGTCGCGGTCGCTCCGGTGGAAGCGGCGGCTCCCGGGGTTCTCCCTGACCCTGCGGAG 418 consensus_7831#1 ------------------------------------------------------------ consensus_7831#0 CGGCTCGGCGTCGGCGGTGGTCGACGCGGTTGCGTTCCGCGTCATGTACGTCGTGGAGGC 478 consensus_7831#1 ------------------------------------------------------------ consensus_7831#0 CGTCGTGCTCGGCCTCGCGCTCTCCTGCTTCTTCCTCTGCTGCGGCTGCCACCTCTAACC 538 consensus_7831#1 ------------------------------------------------------------ consensus_7831#0 TCTCCTCTCTTCACACCACGCCATAATCGGGCGTGCAACAGCTGCAACCATCTTAATTTT 598 consensus_7831#1 ------------------------------------------------------------ consensus_7831#0 CCCTGCTTTTTTTTTCTTTTTTGTTCTTCTCTTGATGCTTCCGCTGTAAATTTCTACTAC 658 consensus_7831#1 ------------------------------------------------------------ consensus_7831#0 CTACCTTTCGGTGCTAAGATTGAAATTTGCAATCTGCAAACTGCAAAAAA 708 consensus_7831#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||