These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7835#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1268 fasta sequence [ATGGCTACCACCGCCGCGACGACCATGGTGGCGGCGGTGCACCACCCCCGCCCCTGCTTCCGCGTGCGCGCCGCCTGGGACATGAACCCGAGCGCCTCCCCCAAGCCCAAGGCCAAGCCCCCGCCTCCCCCGCCGCCGCCGTTGCCGACCGCCCCCGCCCCCACCCACGCCGACCTCTTCGCCCGCCACAGCAACAGCGAGGGCCAAGTGCCAAAGAAGACCACAAGTATGGGATTTGAAAGGTGGTGGTTACCACCTCCGCCAGAGGTGAAGAAGCCCCGTTCGCTCTACAACGCTGCATCATTGGCGTACTTGGGGGACTGCATATATGAACTTTATGCTCGGAGACATTTCTTCTTTCCACCACTGAGCATCAATGACTACAACAAGCGTGCAATGGATGTCGTGAAATGTGAATCACAGGACCTTCTGCTGCACAAACTTCTTGGAGAAGATTTTCTAACTCAAGAAGAAAGGGACATACTTCGTTGGGGAAGAAATATTGTTAGCAGCAAGACACGTACCAGAAAACGTGCTGGAATTGCAGTTTATAATCGAGCATCTTCACTTGAGACACTGATTGGATATCTTTACCTCACAAATTTCAAGCGCTTGGAGCAATTGATGTTCCAGTTAGGATTTACAAGTGGTGCTTCCTCACATCATATTGCAGATGAGCTAGTCTCAGGCTTTAAGAAAAAGAACTCCACTTCTGTACAATCTCAGCAACAAGCAGCGCAGTGAATAGTTTCTGTATTGCAGCAAACATGGTATGATCTAAACAATAGTTATCTGGTGACGACAACCAGCACAAAAATTCATTTAGTTTTGGTGTATGACATCCAAAAGTGGTTGCTCAATGAATGAATAGCAATTACCGTTTGTCTGTCAAACAAGTATCGAGTGAATTGAGCAATGTACATGTATGCAAATATCATTCAGTGCAAGAAAATGGTGTCACTTCCAGGAGGGTGTGGCGGTTCTGATCTGTAGATTCTGAGGTGGCAAGCCGTTGTGTTATTACTACTCATTAGGTTGATATAGGTCGTGGTATCTTTGACACCTTGTGTATGAAGGAGCTGCGAAACTGCAAGATATGCTGAATGATTTGATGCAGAGTTTTAGCACGACTTCAGAATTAACCTGTTCTATGTGCTTCATGGATTCAGTGCACTACCATTATGAGACAGATGCCTTTGCTTTGCTGTTTGTTGTGATCTAATGTAAACAACACAATGTGGAAGTATTTGAGGCCATAAGAAAAGTGG] [+] EMBL AK065362 [ATGGCTACCACCGCCGCGACGACCATGGTGGCGGCGGTGCACCACCCCCGCCCCTGCTTCCGCGTGCGCGCCGCCTGGGACATGAACCCGAGCGCCTCCCCCAAGCCCAAGGCCAAGCCCCCGCCTCCCCCGCCGCCGCCGTTGCCGACCGCCCCCGCCCCCACCCACGCCGACCTCTTCGCCCGCCACAGCAACAGCGAGGGCCAAGTGCCAAAGAAGACCACAAGTATGGGATTTGAAAGGTGGTGGTTACCACCTCCGCCAGAGGTGAAGAAGCCCCGTTCGCTCTACAACGCTGCATCATTGGCGTACTTGGGGGACTGCATATATGAACTTTATGCTCGGAGACATTTCTTCTTTCCACCACTGAGCATCAATGACTACAACAAGCGTGCAATGGATGTCGTGAAATGTGAATCACAGGACCTTCTGCTGCACAAACTTCTTGGAGAAGATTTTCTAACTCAAGAAGAAAGGGACATACTTCGTTGGGGAAGAAATATTGTTAGCAGCAAGACACGTACCAGAAAACGTGCTGGAATTGCAGTTTATAATCGAGCATCTTCACTTGAGACACTGATTGGATATCTTTACCTCACAAATTTCAAGCGCTTGGAGCAATTGATGTTCCAGTTAGGATTTACAAGTGGTGCTTCCTCACATCATATTGCAGATGAGCTAGTCTCAGGCTTTAAGAAAAAGAACTCCACTTCTGTACAATCTCAGCAACAAGCAGCGCAGTGAATAGTTTCTGTATTGCAGCAAACATGGTATGATCTAAACAATAGTTATCTGGTGACGACAACCAGCACAAAAATTCATTTAGTTTTGGTGTATGACATCCAAAAGTGGTTGCTCAATGAATGAATAGCAATTACCGTTTGTCTGTCAAACAAGTATCGAGTGAATTGAGCAATGTACATGTATGCAAATATCATTCAGTGCAAGAAAATGGTGTCACTTCCAGGAGGGTGTGGCGGTTCTGATCTGTAGATTCTGAGGTGGCAAGCCGTTGTGTTATTACTACTCATTAGGTTGATATAGGTCGTGGTATCTTTGACACCTTGTGTATGAAGGAGCTGCGAAACTGCAAGATATGCTGAATGATTTGATGCAGAGTTTTAGCACGACTTCAGAATTAACCTGTTCTATGTGCTTCATGGATTCAGTGCACTACCATTATGAGACAGATGCCTTTGCTTTGCTGTTTGTTGTGATCTAATGTAAACAACACAATGTGGAAGTATTTGAGGCCATAAGAAAAGTGG] [+] EMBL AK105787 [ TACCACCGCCGCGACGACCATGGTGGCGGCGGTGCACCACCCCCGCCCCTGCTTCCGCGTGCGCGCCGCCTGGGACATGAACCCGAGCGCCTCCCCCAAGCCCAAGGCCAAGCCCCCGCCTCCCCCGCCGCCGCCGTTGCCGACCGCCCCCGCCCCCACCCACGCCGACCTCTTCGCCCGCCACAGCAACAGCGAGGGCCAAGTGCCAAAGAAGACCACAAGTATGGGATTTGAAAGGTGGTGGTTACCACCTCCGCCAGAGGTGAAGAAGCCCCGTTCGCTCTACAACGCTGCATCATTGGCGTACTTGGGGGACTGCATATATGAACTTTATGCTCGGAGACATTTCTTCTTTCCACCACTGAGCATCAATGACTACAACAAGCGTGTAATGGATGTCGTGAAATGTGAATCACAGGACCTTCTGCTGAACAAACTTCTTGGAGAAGATTTTCTAACTCAAGAAGAAAGGGACATACTTCGTTGGGGAAGAAATATTGTTAGCAGCAAGACACGTACCAGAAAACGTGCTGGAATTGCAGTTTATAATCGAGCATCTTCACTTGAGACACTGATTGGATATCTTTACCTCACAAATTTCAAGCGCTTGGAGCAATTGATGTTCCAGTTAGGATTTACAAGTGGTGCTTCCTCACATCATATTGCAGATGAGCTAGTCTCAGGCTTTAAGAAAAAGAACTCCACTTCTGTACAATCTCAGCAACAAGCAGCGCAGTGAATAGTTTCTGTATTGCAGCAAACATGGTATGATCTAAACAATAGTTATCTGGTGACCACAACCAGCACAAAAATTCATTTAGTTTTGGTGTATGACATCCAAAAGTGGTTGCTCAATGAATGAATAGCAATTACCGTTTGTCTGTCAAACAAGTATCGAGTGAATTGAGCAATGTACATGTATGCAAATATCATTCAGTGCAAGAAAATGGTGTCACTTCCAGGAGGGTGTGGCGGTTCTGATCTGTAGATTCTGAGGTGGCAAGCCGTTGTGTTATTACTACTCATTAGGTTGATATAGGTCGTGGTATCTTTGACACCTTGTGTATGAAGGAGCTGCGAAACTGCAAGATATGCTGAATGATTTGATGCAGAG ] consensusID : consensus_7835#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 950 fasta sequence [GGTCTGAAAATGTCTGAATTTGATCGACGCATGGGTTGTTGATTTGGTTTGCAGTGCCAAAGAAGACCACAAGTATGGGCTTTGAAAGGTGGTGGCTGCCGCCTCCGCCGGAGGTGAAGAAGCCCCGTTCGCTCTACAACGCCGCGTCCTTGGCGTACTTGGGGGACTGCATATATGAACTTTATGCTCGGAGACATTTCTTCTTTCCACCACTGAGCATCAATGACTACAACAAGCGTGTAATGGATGTCGTGAAATGTGAATCACAGGACCTTCTGCTGAACAAACTTCTCGGAGAAGATTTTCTAACTCAAGAAGAAAGGGACATACTTCGTTGGGGAAGAAATATCGTTAGCAGCAAGACACGTACCAGAAAACGTGCTGGAATTGCAGTTTACAATCGAGCATCTTCACTTGAGACACTGATTGGATATCTTTACCTCACAAATTTCAAGCGTCTGGAGCAACTGATGTTTCAATTAGGGTTTACAAGTGGCGCTTCTTCACAACATATTGCAGATGAGCTTCGCTCGAGTTTCCAGACAAAGAACTCGTCTAGATCTGTACAGTCTAAGCAAGAAGCAGCAAAATGAATAGTTTAGAATGTAGTGACTGATACAAGCACATGTGAATTCTGGAACATGAGATCCAACGGTCACACACACAGTGAGTGATTCGCGATTAATGTTTGGCTGTTTGTCAAAAAAAAGCTAGAGTGAATTGAACAATATATGATGTATGCATTACTGGAGGCGGCCGCAAGATAATGGCTCAACGTCAGTGAGCATTACTGTTTGGCTGTTTTGCTGTTTTGATCAGCCCATTTTGAGGTGCTAAAAA-ATGTGTTTCTACTCATTGAGGGTGATGTAGGCCATGGGTGTTATCAAGACCTTGTGTATTTGTTCAATTGTGTAAGG-G-CCATTGCTAACAGAAGCTGTGCTTGCTATCAA] [+] EMBL CA762610 [GGTCTGAAAATGTCTGAATTTGATCGACGCATGGGTTGTTGATTTGGTTTGCAGTGCCAAAGAAGACCACAAGTATGGGCTTTGAAAGGTGGTGGCTGCCGCCTCCGCCGGAGGTGAAGAAGCCCCGTTCGCTCTACAACGCCGCGTCCTTGGCGTACTTGGGGGACTGCATATATGAACTTTATGCTCGGAGACATTTCTTCTTTCCACCACTGAGCATCAATGACTACAACAAGCGTGTAATGGATGTCGTGAAATGTGAATCACAGGACCTTCTGCTGAACAAACTTCTCGGAGAAGATTTTCTAACTCAAGAAGAAAGGGACATACTTCGTTGGGGAAGAAATATCGTTAGCAGCAAGACACGTACCAGAAAACGTGCTGGAATTGCAGTTTACAATCGAGCATCTTCACTTGAGACACTGATTGGATATCTTTACCTCACAAATTTCAAGCGTCTGGAGCAACTGATGTTTCAATTAGGGTTTACAAGTGGCGCTTCTTCACAACATATTGCAGATGAGCTTCGCTCGAGTTTCCAGACAAAGAACTCGTCTAGATCTGTACAGTCTAAGCAAGAAGCAGCAAAATGAATAGTTTAGAATGTAGTGACTGATACAAGCACATGTGAATTCTGGAACATGAGATCCAACGGCCACACGCACAGTGAGTGATTCGCGATTACTGTTTGGCTGTTTGTCAAAAAAAAGCTAGAGTGAATTGAACAATATATGAGGTATGC ] [-] EMBL CB665960 [ ATATGAACTTTATGCTCGGAGACATTT TTCTTTCCACCACTGAGCATCAATGACTACAACAAGCGTGTAATGGATGTCGTGAAATGTGAATCACAGGACCTTCTGCTGAACAAACTTCTCGGAGAAGATTTTCTAACTCAAGAAGAAAGGGACATACTTCGTTGGGGAAGAAATATCGTTAGCAGCAAGACACGTACCAGAAAACGTGCTGGAATTGCAGTTTACAATCGAGCATCTTCACTTGAGACACTGATTGGATATCTTTACCTCACAAATTTCAAGCGTCTGGAGCAACTGATGTTTCAATTAGGGTTTACAAGTGGCGCTTCTTCACAACATATTGCAGATGAGCTTCGCTCGAGTTTCCAGACAAAGAACTCGTCTAGATCTGTACAGTCTAAGCAAGAAGCAGCAAAATGAATAGTTTAGAATGTAGTGACTGATACAAGCACATGTGAATTCTGGAACATGAGATCCAACGGTCACACACACAGTGAGTGATTCGCGATTAATGTTTGGCTGTTTGTCAAAAAAAAGCTAGAGTGAATTGAACAATATATGATGTATGCATTACTGGAGGCGGCCGCAAGATAATGGCTCAACGTCAGTGAGCATTACTGTTTGGCTGTTTTGCTGTTTTGATCAGCCCATTTTGAGGTGCTAAAAA ATGTGTTTCTACTCATTGAGGGTGATGTAGGCCATGGGTGTTATCAAGACCTTGTGTATTTGTTCAATTGTGTAAGG G CCATTGCTAACAGAAGCTGTGCTTGCTATCAA] [-] EMBL CB680585 [ GACTACAACAAGCGTGTAATGGATGTCGTGAAATGTGAATCACAGGACCTTCTGTTGAACAAACTTCTCGGAGAAGATTTTCTAACTCAAGAAGAAAGGGACATACTTCGTTGGGGAAGAAATATCGTTAGCAGCAAGACACGTACCAGAAAACGTGCTGGAATTGCAGTTTACAATCGAGCATCTTCACTTGAGACACTGATTGGATATCTTTACCTCACAAATTTCAAGCGTCTGGAGCAACTGATGTTTCAATTAGGGTTTACAAGTGGCGCTTCTTCACAACATATTGCAGATGAGCTTCGCTCGAGTTTCCAGACAAAGAACTCGTCTAGATCTGTACAGTCTAAGCAAGAAGCAGCAAAATGAATAGTTTAGAATGTAGTGACTGATACAAGCACATGTGAATTCTGGAACATGAGATCCAACGGTCACACACACAGTGAGTGATTCGCGATTAATGTTTGGCTGTTTGTCAAAAAAAAGCTAGAGTGAATTGAACAATATATGATGTATGCATTACTGGAGGCGGCCGCAAGATAATGGCTCAACGTCAGTGAGCATTACTGTTTGGCTGTTTTGCTGTTTTGATCAGCCCATTTTGAGGTGCTAAAAAGATGTGTTTCTCCTCATTGAGGGTGATGTAGGCCATTGGTGTTATCAAGACCTTG ATATTGGTTCACTTG G AGGGTGCCCATTGTTAACAc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7835#0 ATGGCTACCACCGCCGCGACGACCATGGTGGCGGCGGTGCACCACCCCCGCCCCTGCTTC 60 consensus_7835#1 ------------------------------------------------------------ consensus_7835#0 CGCGTGCGCGCCGCCTGGGACATGAACCCGAGCGCCTCCCCCAAGCCCAAGGCCAAGCCC 120 consensus_7835#1 ------------------------------------------------------------ consensus_7835#0 CCGCCTCCCCCGCCGCCGCCGTTGCCGACCGCCCCCGCCCCCACCCACGCCGACCTCTTC 180 consensus_7835#1 -----------------------------------GGTCTGAAAATGTCTGAATTTGATC 25 * * * * * ** consensus_7835#0 GCCCGCCACAGCAACAGCGAGGGCCA-AGTGCCAAAGAAGACCACAAGTATGGGATTTGA 239 consensus_7835#1 GACGCATGGGTTGTTGATTTGGTTTGCAGTGCCAAAGAAGACCACAAGTATGGGCTTTGA 85 * * ** *************************** ***** consensus_7835#0 AAGGTGGTGGTTACCACCTCCGCCAGAGGTGAAGAAGCCCCGTTCGCTCTACAACGCTGC 299 consensus_7835#1 AAGGTGGTGGCTGCCGCCTCCGCCGGAGGTGAAGAAGCCCCGTTCGCTCTACAACGCCGC 145 ********** * ** ******** ******************************** ** consensus_7835#0 ATCATTGGCGTACTTGGGGGACTGCATATATGAACTTTATGCTCGGAGACATTTCTTCTT 359 consensus_7835#1 GTCCTTGGCGTACTTGGGGGACTGCATATATGAACTTTATGCTCGGAGACATTTCTTCTT 205 ** ******************************************************** consensus_7835#0 TCCACCACTGAGCATCAATGACTACAACAAGCGTGCAATGGATGTCGTGAAATGTGAATC 419 consensus_7835#1 TCCACCACTGAGCATCAATGACTACAACAAGCGTGTAATGGATGTCGTGAAATGTGAATC 265 *********************************** ************************ consensus_7835#0 ACAGGACCTTCTGCTGCACAAACTTCTTGGAGAAGATTTTCTAACTCAAGAAGAAAGGGA 479 consensus_7835#1 ACAGGACCTTCTGCTGAACAAACTTCTCGGAGAAGATTTTCTAACTCAAGAAGAAAGGGA 325 **************** ********** ******************************** consensus_7835#0 CATACTTCGTTGGGGAAGAAATATTGTTAGCAGCAAGACACGTACCAGAAAACGTGCTGG 539 consensus_7835#1 CATACTTCGTTGGGGAAGAAATATCGTTAGCAGCAAGACACGTACCAGAAAACGTGCTGG 385 ************************ *********************************** consensus_7835#0 AATTGCAGTTTATAATCGAGCATCTTCACTTGAGACACTGATTGGATATCTTTACCTCAC 599 consensus_7835#1 AATTGCAGTTTACAATCGAGCATCTTCACTTGAGACACTGATTGGATATCTTTACCTCAC 445 ************ *********************************************** consensus_7835#0 AAATTTCAAGCGCTTGGAGCAATTGATGTTCCAGTTAGGATTTACAAGTGGTGCTTCCTC 659 consensus_7835#1 AAATTTCAAGCGTCTGGAGCAACTGATGTTTCAATTAGGGTTTACAAGTGGCGCTTCTTC 505 ************ ******** ******* ** ***** *********** ***** ** consensus_7835#0 ACATCATATTGCAGATGAGCTAGTCTCAGGCTTTAAGAAAAAGAACTCCACT---TCTGT 716 consensus_7835#1 ACAACATATTGCAGATGAGCTTCGCTCGAGTTTCCAGACAAAGAACTCGTCTAGATCTGT 565 *** ***************** *** * ** *** ********* ** ***** consensus_7835#0 ACAATCTCAGCAACAAGCAGCGCAGTGAATAGTTTCTGTATTGCAGCAAACATGGTATGA 776 consensus_7835#1 ACAGTCTAAGCAAGAAGCAGCAAAATGAATAGTT--TAGAATGTAGTGA--CTGATACAA 621 *** *** ***** ******* * ********* * * ** ** * ** ** * consensus_7835#0 TCTAAACAATAGTTATCTGGTGACGACAACCAGCACAAAAATTCATTTAGTTTTGGTGTA 836 consensus_7835#1 GC-ACATGTGAATTCTG-GAACATGAGATCCA--ACGGTCACACACACAGTG--AGTGAT 675 * * * * ** * * * ** * *** ** * ** *** *** consensus_7835#0 TGACATCCAAAAGTGGTTGCTCAATGAATGAATAGCAATTACCGTTTGTCTGTCAAACAA 896 consensus_7835#1 TCGCGATTAA---TGTTTGGCTGTTTGTCAAAAAAAAGCTAGAGTGAATTGAACAA-TAT 731 * * ** ** *** * ** * * ** ** * *** * consensus_7835#0 GTATCGAGTGAATTGAGCAATGTACATGTATGCAAATATCATTCAGTGCAAGAAAATGGT 956 consensus_7835#1 ATGATGTATGCATTACTGGAGGCGGCCGCAAGATAATGGC--TCAACGTCAGTGAGCATT 789 * * ** *** * * * * * *** * *** * ** * * consensus_7835#0 GTCACTTCCAGGAGGGTGTGGCGGTTCTGATCTGTAGATTCTGAGGTGGCAAGCCGTTGT 1016 consensus_7835#1 ACTGTTT----GGCTGTTTTGCTGTTTTGATCAGCCCATTTTGAGGTGCTAAAAAATG-- 843 ** * ** * ** *** ***** * *** ******* ** * consensus_7835#0 GTTATTACTACTCATT-AGGTTGATATAGGTCGTGG-TATCTTTGACACCTTGTGTATGA 1074 consensus_7835#1 --TGTTTCTACTCATTGAGGGTGATGTAGGCCATGGGTGTTATCAAGACCTTGTGTATTT 901 * ** ********* *** **** **** * *** * * * * *********** consensus_7835#0 AGG-AGCTGCGAAACTGCAAGATATGCTGAATGATTTGATGCAGAGTTTTAGCACGACTT 1133 consensus_7835#1 GTTCAATTGTGTAAGGGCCAT---TGCTAACAGAAGCTGTGCTTGCTATCAA-------- 950 * ** * ** ** * **** * ** *** * * * consensus_7835#0 CAGAATTAACCTGTTCTATGTGCTTCATGGATTCAGTGCACTACCATTATGAGACAGATG 1193 consensus_7835#1 ------------------------------------------------------------ consensus_7835#0 CCTTTGCTTTGCTGTTTGTTGTGATCTAATGTAAACAACACAATGTGGAAGTATTTGAGG 1253 consensus_7835#1 ------------------------------------------------------------ consensus_7835#0 CCATAAGAAAAGTGG 1268 consensus_7835#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||