These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7840#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1745 fasta sequence [TGTCCTTTTACAAGTGGTGATGAAAAGGATAAGCGTTGAAGATGAAAATGAGTCTACTCTTTTGTTTCAGCTTCTGGGCACAATAATCGAGTCTGGCCAAGAAAAAGTTATGCCTCACATTCCTGAAATTGTATCTAACATAGCCAATACCATAATGAAGCTATTGCCCCCTGTGCCAGATCCCTGGCCTCAGGCTGTTGAACGG-GGTTTTGCTGCACTGGTATCGATGGCTCAAGCTTGGGAAAGCTCTGCACCAGATGAAAACAAGGACATTGAAATGAGGGTCTGGCAGTCAGGCCAGTTTGCTATGGCCCAAACATTTTCGCATGTGTTACAAAA-GGCTTGGTTGCTACCAGTTGAGCAAAT-GGGGTTATCTGTTTGCTCTTCATTGCCACCTCTGTCGTGTGTAAATGATGCTTCTATTTTACTTGAGTTCATTATGAGGTCTATCACCTCTATGGAAGAAACTGCAAGTATGAAGGTGTTTGAGCTAGTAGCTATATGGGCTGACATAATTGCTTGTTGGGATTCTTGGGAGGAAATGGAGGATCAGGGAATTTTCAATACAATCAAAGAAGCTGTTAACTTCCATCAAAACTTTGATTCTAATGGTTTCTTCCTGAAAATACTCCCTTCCCGATCTGAAAATAGTTCACAAAGTTCAGTCATAAGTTGGGTTTCTAGTTTTATAACCAGGGCCATTGAAGCTTACCCATCTGCAACATGGAGGGCATGTTCATGCATGCATACACTGCTGCACACTCCTAATTTCTCTCATGGAGCAGAAGATACTAGAATGACTCTTGCTGTATCCTTTGCGCAAGCAGCATTCTCCCGTTTCAAGTCTGTATCTGACAGCCCTTCTGGGATATGGAAACCACTAATACTAGTCATTTCGTCATGCTACATATGCTACCCTGATGCTATTGAGCAAGTCTTACGCAAATATGACAGTAACGGTTATGCGATATGGGCATCTGCATTAGCACAAATCTCAAGTAGCTCTTTCAATCCTGGCTTGTCATCTGAATCCGAGATCAAACTAGCTGTGTTAACGTTAGCAACTGTGATTGAGCATCTTTTGGCCCTTTCTATGGGTGGCACCAAACTATTGCATGATTGCTGTGTATCATTGATGGAGTCTTGCATCCATCTGAAGGAAGTTCAAGAGGATGGGGATGATGGTGATGGTGCAGAAGATCTTGATGATGATGATGATGATGAAGAGGAGGAAGACACCGATGAAGATGATGAGGATTATAATCAGGATTCGGATGATGATGATGTACGAGAAGAGACAGAAGAGGAATTTCTTCAAAGATATGCAGCGGCTGCCGGTGGTGAATCAATTGAAATTGTTGAGGACGGTGACATTGATGATGAAACCCAAGACATTGAATTGGGTTCCCTGGATGAAATGGATGTACAGCAGGTGGTTCTTTCGATGATGAAGATTCGTCCTGATCTCATTCGCGCTCAAACATTTCCGGATGGCCTAATGGAGAGAATGGCAGAAACGTTTCCTGAATATGAACAGCTGTTCCATGTTCATCGGCAAGCCTAGGCGATACCACAATAGACTTGTGTGCAGCCTTGTTATTTATTGTTTCTAGTTTCTTTTTTTTTTAAACTTGTCCGTGTGTTTATATATTTGTATGGAATGGTGGGCCGATTATTGTTGATGGTTGTGGCGATTATTTTGTGATTTGGATCGGACTAATCTGCCGGACATGATGTTTTAAGGA] [+] EMBL AK101888 [TGTCCTTTTACAAGTGGTGATGAAAAGGATAAGCGTTGAAGATGAAAATGAGTCTACTCTTTTGTTTCAGCTTCTGGGCACAATAATCGAGTCTGGCCAAGAAAAAGTTATGCCTCACATTCCTGAAATTGTATCTAACATAGCCAATACCATAATGAAGCTATTGCCCCCTGTGCCAGATCCCTGGCCTCAGGCTGTTGAACGG GGTTTTGCTGCACTGGTATCGATGGCTCAAGCTTGGGAAAGCTCTGCACCAGATGAAAACAAGGACATTGAAATGAGGGTCTGGCAGTCAGGCCAGTTTGCTATGGCCCAAACATTTTCGCATGTGTTACAAAA GGCTTGGTTGCTACCAGTTGAGCAAAT GGGGTTATCTGTTTGCTCTTCATTGCCACCTCTGTCGTGTGTAAATGATGCTTCTATTTTACTTGAGTTCATTATGAGGTCTATCACCTCTATGGAAGAAACTGCAAGTATGAAGGTGTTTGAGCTAGTAGCTATATGGGCTGACATAATTGCTTGTTGGGATTCTTGGGAGGAAATGGAGGATCAGGGAATTTTCAATACAATCAAAGAAGCTGTTAACTTCCATCAAAACTTTGATTCTAATGGTTTCTTCCTGAAAATACTCCCTTCCCGATCTGAAAATAGTTCACAAAGTTCAGTCATAAGTTGGGTTTCTAGTTTTATAACCAGGGCCATTGAAGCTTACCCATCTGCAACATGGAGGGCATGTTCATGCATGCATACACTGCTGCACACTCCTAATTTCTCTCATGGAGCAGAAGATACTAGAATGACTCTTGCTGTATCCTTTGCGCAAGCAGCATTCTCCCGTTTCAAGTCTGTATCTGACAGCCCTTCTGGGATATGGAAACCACTAATACTAGTCATTTCGTCATGCTACATATGCTACCCTGATGCTATTGAGCAAGTCTTACGCAAATATGACAGTAACGGTTATGCGATATGGGCATCTGCATTAGCACAAATCTCAAGTAGCTCTTTCAATCCTGGCTTGTCATCTGAATCCGAGATCAAACTAGCTGTGTTAACGTTAGCAACTGTGATTGAGCATCTTTTGGCCCTTTCTATGGGTGGCACCAAACTATTGCATGATTGCTGTGTATCATTGATGGAGTCTTGCATCCATCTGAAGGAAGTTCAAGAGGATGGGGATGATGGTGATGGTGCAGAAGATCTTGATGATGATGATGATGATGAAGAGGAGGAAGACACCGATGAAGATGATGAGGATTATAATCAGGATTCGGATGATGATGATGTACGAGAAGAGACAGAAGAGGAATTTCTTCAAAGATATGCAGCGGCTGCCGGTGGTGAATCAATTGAAATTGTTGAGGACGGTGACATTGATGATGAAACCCAAGACATTGAATTGGGTTCCCTGGATGAAATGGATGTACAGCAGGTGGTTCTTTCGATGATGAAGATTCGTCCTGATCTCATTCGCGCTCAAACATTTCCGGATGGCCTAATGGAGAGAATGGCAGAAACGTTTCCTGAATATGAACAGCTGTTCCATGTTCATCGGCAAGCCTAGGCGATACCACAATAGACTTGTGTGCAGCCTTGTTATTTATTGTTTCTAGTTTCTTTTTTTTTTAAACTTGTCCGTGTGTTTATATATTTGTATGGAATGGTGGGCCGATTATTGTTGATGGTTGTGGCGATTATTTTGTGATTTGGATCGGACTAATCTGCCGGACATGATGTTTTAAGGA] [+] EMBL CF323181 [TGTCCTTTTACAAGTGGTGATGAAAAGGATAAGCGTTGAAGATGAAAATGAGTCTACTCTTTTGTTTCAGCTTCTGGGCACAATAATCGAGTCTGGCCAAGAAAAAGTTTTGCCTCACATTCCTGAAATTGTATCTAACATAGCCAATACCATAATGAAGCTATTGCCCCCTGTGCCAGATCCCTGGCCTCAGGCTGTTGAACGGNGGTTTTGCTGCACTGGTATCGATGGCTCAAGCTTGGGAAAGCTCTGCACCAGATGAAAACAAGGACATTGAAATGAGGGTCTGGCAGTCAGGCCAGTTTGCTATCGCCCAAACATTTTCGCATGTGTTACAAAAGGGCTTGGTTGCTTCCAGTTGAGCAAATGGGGGTTATCTGTTTGCTCTTCATTGCCACCTCTGTCATGTGTAAATGATGCTTCTATTTTACTTGAGTTCATTATGAGGTCTATCA ] [+] EMBL AA751431 [ TCCCGTTTCAAGTCTGTATCTGACAGCCCTTCTGGGATATGGAAACCACTAATACTAGTCATTTCGTCATGCTACATATGCTACCCTGATGCTATTGAGCAACTCTTACGCAAATATGACAGTAACGGTTATGCGATGTGGGCATCTGCATTAGCACAAATCTCAAGTAGCTCTTTCAATCCTGGCTTGTCA CTGAATCCGAGAca ] consensusID : consensus_7840#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [GCATCTGCATTAGCACAAATCTCAAGTAGCTCTTTCAATCCTGGCTTGTCATCTGAATCCGAGATCAAACTAGCTGTGTTAACGTTAGCAACTGTGATTGAGCATCTTTTGGCCCTTTCTATGGGTGGCACCAAACTATTGCATGATTGCTGTGTATCATTGATGGAGTCTTGCATCCATCTGAAGGAAGTTCAAGAGGATGGGGATGATGGTGATGGTGCAGAAGATCTTGATGATGATGATGATGATGAAGAGGAGGAAGACACCGATGAAGATGATGAGGATTCGGATGATGATGATGTACGAGAAGAGACAGAAGAGGATTCCTTCAAGATATGCACGGCTGCCGGTGGGTGATCCATTGAATTGTGAAGGCCGGTGACATTGATGATGAACCCAGCATTGATTGGGGNCCCGGANTGAATGGGTTTACCNG] [+] EMBL AU091375 [GCATCTGCATTAGCACAAATCTCAAGTAGCTCTTTCAATCCTGGCTTGTCATCTGAATCCGAGATCAAACTAGCTGTGTTAACGTTAGCAACTGTGATTGAGCATCTTTTGGCCCTTTCTATGGGTGGCACCAAACTATTGCATGATTGCTGTGTATCATTGATGGAGTCTTGCATCCATCTGAAGGAAGTTCAAGAGGATGGGGATGATGGTGATGGTGCAGAAGATCTTGATGATGATGATGATGATGAAGAGGAGGAAGACACCGATGAAGATGATGAGGATTCGGATGATGATGATGTACGAGAAGAGACAGAAGAGGATTCCTTCAAGATATGCACGGCTGCCGGTGGGTGATCCATTGAATTGTGAAGGCCGGTGACATTGATGATGAACCCAGCATTGATTGGGGNCCCGGANTGAATGGGTTTACCNG] consensusID : consensus_7840#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 313 fasta sequence [TGGTTCTTTCGATGATGAAGATTCGTCCTGATCTCATTCGCGCTCAAACATTTCCGGATGGCCTAATGGAGAGAATGGCAGAAACGTTTCCTGAATATGAACAGCTGTTCCATGTTCATCGGCAAGCCTAGGCGATACCACAATAGACTAGTGTGCAGCCTTGTTATTTATTGTTTCTAGTTTCTTTTTTTTTTAAACTTGTCCGTGTGTTTATATATTTGTATGGAATGGTGGGCCGATTATTGTTGATGGTTGTGGCGATTATTTTGTNNTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU058271 [TGGTTCTTTCGATGATGAAGATTCGTCCTGATCTCATTCGCGCTCAAACATTTCCGGATGGCCTAATGGAGAGAATGGCAGAAACGTTTCCTGAATATGAACAGCTGTTCCATGTTCATCGGCAAGCCTAGGCGATACCACAATAGACTAGTGTGCAGCCTTGTTATTTATTGTTTCTAGTTTCTTTTTTTTTTAAACTTGTCCGTGTGTTTATATATTTGTATGGAATGGTGGGCCGATTATTGTTGATGGTTGTGGCGATTATTTTGTNNTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7840#0 TGTCCTTTTACAAGTGGTGATGAAAAGGATAAGCGTTGAAGATGAAAATGAGTCTACTCT 60 consensus_7840#1 ------------------------------------------------------------ consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 TTTGTTTCAGCTTCTGGGCACAATAATCGAGTCTGGCCAAGAAAAAGTTATGCCTCACAT 120 consensus_7840#1 ------------------------------------------------------------ consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 TCCTGAAATTGTATCTAACATAGCCAATACCATAATGAAGCTATTGCCCCCTGTGCCAGA 180 consensus_7840#1 ------------------------------------------------------------ consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 TCCCTGGCCTCAGGCTGTTGAACGGGGTTTTGCTGCACTGGTATCGATGGCTCAAGCTTG 240 consensus_7840#1 ------------------------------------------------------------ consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 GGAAAGCTCTGCACCAGATGAAAACAAGGACATTGAAATGAGGGTCTGGCAGTCAGGCCA 300 consensus_7840#1 ------------------------------------------------------------ consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 GTTTGCTATGGCCCAAACATTTTCGCATGTGTTACAAAAGGCTTGGTTGCTACCAGTTGA 360 consensus_7840#1 ------------------------------------------------------------ consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 GCAAATGGGGTTATCTGTTTGCTCTTCATTGCCACCTCTGTCGTGTGTAAATGATGCTTC 420 consensus_7840#1 ------------------------------------------------------------ consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 TATTTTACTTGAGTTCATTATGAGGTCTATCACCTCTATGGAAGAAACTGCAAGTATGAA 480 consensus_7840#1 ------------------------------------------------------------ consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 GGTGTTTGAGCTAGTAGCTATATGGGCTGACATAATTGCTTGTTGGGATTCTTGGGAGGA 540 consensus_7840#1 ------------------------------------------------------------ consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 AATGGAGGATCAGGGAATTTTCAATACAATCAAAGAAGCTGTTAACTTCCATCAAAACTT 600 consensus_7840#1 ------------------------------------------------------------ consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 TGATTCTAATGGTTTCTTCCTGAAAATACTCCCTTCCCGATCTGAAAATAGTTCACAAAG 660 consensus_7840#1 ------------------------------------------------------------ consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 TTCAGTCATAAGTTGGGTTTCTAGTTTTATAACCAGGGCCATTGAAGCTTACCCATCTGC 720 consensus_7840#1 ------------------------------------------------------------ consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 AACATGGAGGGCATGTTCATGCATGCATACACTGCTGCACACTCCTAATTTCTCTCATGG 780 consensus_7840#1 ------------------------------------------------------------ consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 AGCAGAAGATACTAGAATGACTCTTGCTGTATCCTTTGCGCAAGCAGCATTCTCCCGTTT 840 consensus_7840#1 ------------------------------------------------------------ consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 CAAGTCTGTATCTGACAGCCCTTCTGGGATATGGAAACCACTAATACTAGTCATTTCGTC 900 consensus_7840#1 ------------------------------------------------------------ consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 ATGCTACATATGCTACCCTGATGCTATTGAGCAAGTCTTACGCAAATATGACAGTAACGG 960 consensus_7840#1 ------------------------------------------------------------ consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 TTATGCGATATGGGCATCTGCATTAGCACAAATCTCAAGTA-GCTCTTTCAATCCTGGCT 1019 consensus_7840#1 -------------GCATCTGCATTAGCACAAATCTCAAGTA-GCTCTTTCAATCCTGGCT 46 consensus_7840#2 -TGGTTCTTTCGATGATGAAGATTCGTCCTGATCTCATTCGCGCTCAAACATTTCCGGAT 59 ** *** * * ****** **** ** * * ** * consensus_7840#0 TGTCATCTGAATCCGAGATCAAACTAGCTGTGTTAACGTTAGCAACTGTGAT-TGAGCAT 1078 consensus_7840#1 TGTCATCTGAATCCGAGATCAAACTAGCTGTGTTAACGTTAGCAACTGTGAT-TGAGCAT 105 consensus_7840#2 GGCCTAATGGAGAGAATGGCAGAAACGTTTCCTGAATATGAACAGCTGTTCCATGTTCAT 119 * * ** * * ** * * * * ** * * ** **** ** *** consensus_7840#0 CTTTTGGCCCTTTCTATGGGTGGCACCAAACTATTGCATGA--TTGCTGTGTATCATTGA 1136 consensus_7840#1 CTTTTGGCCCTTTCTATGGGTGGCACCAAACTATTGCATGA--TTGCTGTGTATCATTGA 163 consensus_7840#2 CGGCAAGCCTAGGCGATA--CCACAATAGACTAGTGTGCAGCCTTGTTATTTATTGTTTC 177 * *** * ** ** * **** ** *** * * *** ** consensus_7840#0 TGGAGTCTTGCATCCATCTGAAGGAAGTTCAAGAGGATGGGGATGATGGTG--ATGGTGC 1194 consensus_7840#1 TGGAGTCTTGCATCCATCTGAAGGAAGTTCAAGAGGATGGGGATGATGGTG--ATGGTGC 221 consensus_7840#2 TAGTTTCTT---TTTTTTTTAAACTTGTCCGTGTGTTTATATATTTGTATGGAATGGTGG 234 * * **** * * * ** ** * * * * ** ** ****** consensus_7840#0 AGAAGATCTTGATGATGATGATGATGATGAAGAGGAGGAAGACACCGATGAAGATGATGA 1254 consensus_7840#1 AGAAGATCTTGATGATGATGATGATGATGAAGAGGAGGAAGACACCGATGAAGATGATGA 281 consensus_7840#2 GCCGATTATTGTTGATGGTTGTGGCGATTATTTTGTNNTTAAAAAAAAAAAAAAAAAAAA 294 * *** ***** * ** *** * * * * * ** * * * consensus_7840#0 GGATTATAATCAGGATTCGGATGATGATGATGTACGAGAAGAGACAGAAGAGGAATTTCT 1314 consensus_7840#1 ------------GGATTCGGATGATGATGATGTACGAGAAGAGACAGAAGAGGA--TTCC 327 consensus_7840#2 A-----------AAAAAAAAAAAAAAAAAA------------------------------ 313 * * * * * consensus_7840#0 TCAAAGATATGCAGCGGCTGCCGGTGGTGAATCAATTGAAATTGTTGAGGACGGTGACAT 1374 consensus_7840#1 TTCAAGATATGCA-CGGCTGCCGGTGGGTGATCCATTGAA-TTGTGAAGGCCGGTGACAT 385 consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 TGATGATGAAACCCAAGACATTGAATTGGGTTCCCTGGATGAAATGGATGTACAGCAGGT 1434 consensus_7840#1 TGATGATGAACCC---AGCATTGATTGGGG--NCCCGGANTGAATGGGTTTACCNG---- 436 consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 GGTTCTTTCGATGATGAAGATTCGTCCTGATCTCATTCGCGCTCAAACATTTCCGGATGG 1494 consensus_7840#1 ------------------------------------------------------------ consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 CCTAATGGAGAGAATGGCAGAAACGTTTCCTGAATATGAACAGCTGTTCCATGTTCATCG 1554 consensus_7840#1 ------------------------------------------------------------ consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 GCAAGCCTAGGCGATACCACAATAGACTTGTGTGCAGCCTTGTTATTTATTGTTTCTAGT 1614 consensus_7840#1 ------------------------------------------------------------ consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 TTCTTTTTTTTTTAAACTTGTCCGTGTGTTTATATATTTGTATGGAATGGTGGGCCGATT 1674 consensus_7840#1 ------------------------------------------------------------ consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 ATTGTTGATGGTTGTGGCGATTATTTTGTGATTTGGATCGGACTAATCTGCCGGACATGA 1734 consensus_7840#1 ------------------------------------------------------------ consensus_7840#2 ------------------------------------------------------------ consensus_7840#0 TGTTTTAAGGA 1745 consensus_7840#1 ----------- consensus_7840#2 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||