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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7846#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 825 fasta sequence
[CGAGTTTTTTTTTTTTTTTTTTATGAAAAGAAGTAAATTCATTTATTCCTTCCTCAATTCAAGGTTCACAAAGTGTCAATTCAATATATTTCTGTCAGCTCATATATGCCATATAATTACAAGTGCCAGGCCATCTTCCGTGGTCAGGCTCACAAAAAATTGTAAGAGAAGTGAGGCCACAAGAAGAGCCTGCATGCAGTACATTTTTGCTCAGATAGATACATGTAATTACACTTCAGAAACTCTCAAGAAAGCGGGTGAAAAAATTGAATAGCATAGGCATACATACATCAGAATAGAATACACACCATGACCAACAAATATACATGTATAGTATAAAATTCAATCTATGCACACAGATGTAGGAGCTTGGGCAGGTTAGTGATCCATCTCCGCTGCAATCAAATATTCTGCCGGTTGATGAAATAGCCTTCATTTGTTTCCCTGAGAATGCCCCTTTAGAGCTGATGACATGGCTCGTAGCCTGTCGGTGACCTCCGTGAATGAGGGGCGGATGTCAGGATCGGCCGACCAGCATTGCTCCATCAGTTGTCGCCATTCAGGCTCGCAGTTTTTGGGTATCGGAGGCCGAAGAGTGTTGTTGACGATACCGCCTATGATAGCGCCACAGTGCATATTTGCGTACGGTTCCTCACCAGTCAAGATCTCCCACAAAGCTATCCCAAAGGAGAACACATCCACCTTTTCAGACACTCGGCTGCTGCTTCCATTCAAAAGCTCTGGTGCCATCCATGGAAGAGTGCCCCGTACACCACCAGAAACCAAAGTGTTGCGCTTAATTCTTGATAATCCGCCTCGTGCCGA]
[+] EMBL CF322942 [CGAGTTTTTTTTTTTTTTTTTTATGAAAAGAAGTAAATTCATTTATTCCTTCCTCAATTCAAGGTTCACAAAGTGTCAATTCAATATATTTCTGTCAGCTCATATATGCCATATAATTACAAGTGCCAGGCCATCTTCCGTGGTCAGGCTCACAAAAAATTGTAAGAGAAGTGAGGCCACAAGAAGAGCCTGCATGCAGTACATTTTTGCTCAGATAGATACATGTAATTACACTTCAGAAACTCTCAAGAAAGCGGGTGAAAAAATTGAATAGCATAGGCATACATACATCAGAATAGAATACACACCATGACCAACAAATATACATGTATAGTATAAAATTCAATCTATGCACACAGATGTAGGAGCTTGGGCAGGTTAGTGATCCATCTCCGCTGCAATCAAATATTCTGCCGGTTGATGAAATAGCCTTCATTTGTTTCCCTGAGAATGCCCCTTTAGAGCTGATGACATGGCTCGTAGCCTGTCGGTGA ]
[+] EMBL CB627524 [ TCAATTCAAGGTTCACAAAGTGTCAATTCAATATATTTCTGTCAGCTCATATATGCCATATAATTACAAGTGCCAGGCCATCTTCCGTGGTCAGGCTCACAAAAAATTGTAAGAGAAGTGAGGCCACAAGAAGAGCCTGCATGCAGTACATTTTTGCTCAGATAGATACATGTAATTACACTTCAGAAACTCTCAAGAAAGCGGGTGAAAAAATTGAATAGCATAGGCATACATACATCAGAATAGAATACACACCATGACCAACAAATATACATGTATAGTATAAAATTCAATCTATGCACACAGATGTAGGAGCTTGGGCAGGTTAGTGATCCATCTCCGCTGCAATCAAATATTCTGCCGGTTGATGAAATAGCCTTCATTTGTTTCCCTGAGAATGCCCCTTTAGAGCTGATGACATGGCTCGTAGCCTGTCGGTGACCTCCGTGAATGAGGGGCGGATGTCAGGATCGGCCGACCAGCATTGCTCCATCAGTTGTCGCCATTCAGGCTCGCAGTTTTTGGGTATCGGAGGCCGAAGAGTGTTGTTGACGATACCGCCTATGATAGCGCCACAGTGCATATTTGCGTACGGTTCCTCACCAGTCAAGATCTCCCACAAAGCTATCCCAAAGGAGAACACATCCACCTTTTCAGACACTCGGCTGCTGCTTCCATTCAAAAGCTCTGGTGCCATCCATGGAAGAGTGCCCCGTACACCACCAGAAACCAAAGTGTTGCGCTTAATTCTTGATAATCCGCCTCGTGCCGA]
[-] EMBL CB627523 [ CAATTCAAGGTTCACAAAGTGTCAATTCAATATATTTCTGTCAGCTCATATATGCCATATAATTACAAGTGCCAGGCCATCTTCCGTGGTCAGGCTCACAAAAAATTGTAAGAGAAGTGAGGCCACAAGAAGAGCCTGCATGCAGTACATTTTTGCTCAGATAGATACATGTAATTACACTTCAGAAACTCTCAAGAAAGCGGGTGAAAAAATTGAATAGCATAGGCATACATACATCAGAATAGAATACACACCATGACCAACAAATATACATGTATAGTATAAAATTCAATCTATGCACACAGATGTAGGAGCTTGGGCAGGTTAGTGATCCATCTCCGCTGCAATCAAATATTCTGCCGGTTGATGAAATAGCCTTCATTTGTTTCCCTGAGAATGCCCCTTTAGAGCTGATGACATGGCTCGTAGCCTGTCGGTGACCTCCGTGAATGAGGGGCGGATGTCAGGATCGGCCGACCAGCATTGCTCCATCAGTTGTCGCCATTCAGGCTCGCAGTTTTTGGGTATCGGAGGCCGAAGAGTGTTGTTGACGATACCGCCTATGATAGCGCCACAGTGCATATTTGCGTACGGTTCCTCACCAGTCAAGATCTCCCACAAAGCTATCCCAAAGGAGAACACATCCACCTTTTCAGACACTCGGCTGCTGCTTCCATTCAAAAGCTCTGGTGCCATCCATGGAAGAGTGCCCCGTACACCACCAGAAACCAAAGTGTTGCGCATGATTCTT ]
consensusID : consensus_7846#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 807 fasta sequence
[TTTTTTTTTTTTACATGTAATTACACTTCAGAAACTCTCAAGAAAGCGGGTGAAAAAATTGAATAGCATAGGCATACATACATCAGAATAGAATACACACCATGACCAACAAATATACATGTATAGTATAAAATTCAATCTATGCACACAGATGTAGGAGCTTGGGCAGGTTAGTGATCCATCTCCGCTGCAATCAAATATTCTGCCGGTTGATGAAATAGCCTTCATTTGTTTCCCTGAGAATGCCCCTTTAGAGCTGATGACATGGCTCGTAGCCTGTCGGTGACCTCCGTGAATGAGGGGCGGATGTCAGGATCGGCCGACCAGCATTGCTCCATCAGTTGTCGCCATTCAGGCTCGCAGTTTTTGGGTATCGGAGGCCGAAAAGTGTTGGTGACGATACCGCCTATGATAGCGCCACAGTGCATATTTGCGTACGGGTCCTCACCAGTCAAGATCTCCCACAAAGCTATCCCGAAGGAGAACACATCCACCTTTTCAGACACTCGGCTGCTGCTTCCATTCAGAAGCTCTGGTGCCATCCATGGAAGAGTGCCCCGTACACCACCAGAGACCAAAGGGTTGGGCTTAATTCTGGATAATGCCAAGTCTCCAACCTTTGCAGATTGGCCTCTCAGGATCTCTGAAATTAACACGGAAATTGGCGAATTTC-AATAAAAATGGGACCA-GCTTTTGGAGTGCAAATATTCCATCCCAAATGCCGCATCCATAGCAATAATGAGCCTTTTCCGACGATCGAGCATTCTGTCCTTCCTTAAAAGAACATTCCTTAGTGATCCATTTACC]
[+] EMBL CA763554 [TTTTTTTTTTTTACATGTAATTACACTTCAGAAACTCTCAAGAAAGCGGGTGAAAAAATTGAATAGCATAGGCATACATACATCAGAATAGAATACACACCATGACCAACAAATATACATGTATAGTATAAAATTCAATCTATGCACACAGATGTAGGAGCTTGGGCAGGTTAGTGATCCATCTCCGCTGCAATCAAATATTCTGCCGGTTGATGAAATAGCCTTCATTTGTTTCCCTGAGAATGCCCCTTTAGAGCTGATGACATGGCTCGTAGCCTGTCGGTGACCTCCGTGAATGAGGGGCGGATGTCAGGATCGGCCGACCAGCATTGCTCCATCAGTTGTCGCCATTCAGGCTCGCAGTTTTTGGGTATCGGAGGCCGAAAAGTGTTGGTGACGATACCGCCTATGATAGCGCCACAGTGCATATTTGCGTACGGGTCCTCACCAGTCAAGATCTCCCACAAAGCTATCCCGAAGGAGAACACATCCACCTTTTCAGACACTCGGCTGCTGCTTCCATTCAGAAGCTCTGGTGCCATCCATGGAAGAGTGCCCCGTACACCACCAGAGACCAAAGGGTTGGGCTTAATTCTGGATAATGCCAAGTCTCCAACCTTTGCAGATTGGCCTCTCAGGATCTCTGAAATTAACACGGAAATTGGCGAATTTC AATAAAAATGGGACCA ]
[-] EMBL CA763781 [ TAGCGCCACAGTGCATATTTGCGTACGGTTCCTCACCAGTCAAGATCTCCCACAAAGCTATCCCAAAGGAGAACACATCCACCTTTTCAGACACTCGGCTGCTGCTTCCATTCAAAAGCTCTGGTGCCATCCATGGAAGAGTGCCCCGTACACCACCAGAAACCAAAGTGTTGCGCTTAATTCTTGATAATCCGAAGTCTCCAACC TTGCAGATTGGCCTCTGAGGATCTCTCAAATTAACAAGTAAATTGTCGCATTTCAAATCAAAAT GGACTATGCTTTTGGAGTGCAAATATTCCATCCCAAATGCCGCATCCATAGCAATAATGAGCCTTTTCCGACGATCGAGCATTCTGTCCTTCCTTAAAAGAACATTCCTTAGTGATCCATTTACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7846#0 CGAGTTTTTTTTTTTTTTTTTTATGAAAAGAAGTAAATTCATTTATTCCTTCCTCAATTC 60
consensus_7846#1 ------------------------------------------------------------
consensus_7846#0 AAGGTTCACAAAGTGTCAATTCAATATATTTCTGTCAGCTCATATATGCCATATAATTAC 120
consensus_7846#1 ------------------------------------------------------------
consensus_7846#0 AAGTGCCAGGCCATCTTCCGTGGTCAGGCTCACAAAAAATTGTAAGAGAAGTGAGGCCAC 180
consensus_7846#1 ------------------------------------------------------------
consensus_7846#0 AAGAAGAGCCTGCATGCAGTACATTTTTGCTCAGATAGATACATGTAATTACACTTCAGA 240
consensus_7846#1 -----------------------TTTTTTTTTT-----TTACATGTAATTACACTTCAGA 32
***** * *********************
consensus_7846#0 AACTCTCAAGAAAGCGGGTGAAAAAATTGAATAGCATAGGCATACATACATCAGAATAGA 300
consensus_7846#1 AACTCTCAAGAAAGCGGGTGAAAAAATTGAATAGCATAGGCATACATACATCAGAATAGA 92
************************************************************
consensus_7846#0 ATACACACCATGACCAACAAATATACATGTATAGTATAAAATTCAATCTATGCACACAGA 360
consensus_7846#1 ATACACACCATGACCAACAAATATACATGTATAGTATAAAATTCAATCTATGCACACAGA 152
************************************************************
consensus_7846#0 TGTAGGAGCTTGGGCAGGTTAGTGATCCATCTCCGCTGCAATCAAATATTCTGCCGGTTG 420
consensus_7846#1 TGTAGGAGCTTGGGCAGGTTAGTGATCCATCTCCGCTGCAATCAAATATTCTGCCGGTTG 212
************************************************************
consensus_7846#0 ATGAAATAGCCTTCATTTGTTTCCCTGAGAATGCCCCTTTAGAGCTGATGACATGGCTCG 480
consensus_7846#1 ATGAAATAGCCTTCATTTGTTTCCCTGAGAATGCCCCTTTAGAGCTGATGACATGGCTCG 272
************************************************************
consensus_7846#0 TAGCCTGTCGGTGACCTCCGTGAATGAGGGGCGGATGTCAGGATCGGCCGACCAGCATTG 540
consensus_7846#1 TAGCCTGTCGGTGACCTCCGTGAATGAGGGGCGGATGTCAGGATCGGCCGACCAGCATTG 332
************************************************************
consensus_7846#0 CTCCATCAGTTGTCGCCATTCAGGCTCGCAGTTTTTGGGTATCGGAGGCCGAAGAGTGTT 600
consensus_7846#1 CTCCATCAGTTGTCGCCATTCAGGCTCGCAGTTTTTGGGTATCGGAGGCCGAAAAGTGTT 392
***************************************************** ******
consensus_7846#0 GTTGACGATACCGCCTATGATAGCGCCACAGTGCATATTTGCGTACGGTTCCTCACCAGT 660
consensus_7846#1 GGTGACGATACCGCCTATGATAGCGCCACAGTGCATATTTGCGTACGGGTCCTCACCAGT 452
* ********************************************** ***********
consensus_7846#0 CAAGATCTCCCACAAAGCTATCCCAAAGGAGAACACATCCACCTTTTCAGACACTCGGCT 720
consensus_7846#1 CAAGATCTCCCACAAAGCTATCCCGAAGGAGAACACATCCACCTTTTCAGACACTCGGCT 512
************************ ***********************************
consensus_7846#0 GCTGCTTCCATTCAAAAGCTCTGGTGCCATCCATGGAAGAGTGCCCCGTACACCACCAGA 780
consensus_7846#1 GCTGCTTCCATTCAGAAGCTCTGGTGCCATCCATGGAAGAGTGCCCCGTACACCACCAGA 572
************** *********************************************
consensus_7846#0 AACCAAAGTGTTGCGCTTAATTCTTGATAATCC---GCCTCGTGCCGA------------ 825
consensus_7846#1 GACCAAAGGGTTGGGCTTAATTCTGGATAATGCCAAGTCTCCAACCTTTGCAGATTGGCC 632
******* **** ********** ****** * * *** **
consensus_7846#0 ------------------------------------------------------------
consensus_7846#1 TCTCAGGATCTCTGAAATTAACACGGAAATTGGCGAATTTCAATAAAAATGGGACCAGCT 692
consensus_7846#0 ------------------------------------------------------------
consensus_7846#1 TTTGGAGTGCAAATATTCCATCCCAAATGCCGCATCCATAGCAATAATGAGCCTTTTCCG 752
consensus_7846#0 -------------------------------------------------------
consensus_7846#1 ACGATCGAGCATTCTGTCCTTCCTTAAAAGAACATTCCTTAGTGATCCATTTACC 807
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||