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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7850#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2173 fasta sequence
[TTCTTCTTCCTTCCACAAAAGCAAGAGGTTCCCCGGAGAGCGCGCCGCCGGCGACAAGGACGACGAGCCGCCTCCCCGAATCGCGACCCCGCCCTATCCTCCTCCTCCTCCTCTGTGCGGCCTGCCCCCCTCGCGCGCACGGCCGGGCCGGCGAGGGGTTGACGTGACGCGGCCGGTCGACCTCCTCCTCCGTCTGCAAGGTTTTGATGTCGGACAACAGTTTACGATATTCCAATAATATCTTAGCTGCAGTATAACACCACTGCCCCCATTCTGTTGCCCTCAAATCAGCTCCATTTAGAGTGTTTAAATGTGCTTATCTTCTCGGATTCTCAATGGGAAGACACGATATTTCTCCACTCTCAGAAGCTCGCACACTGAAAACAAATGTATCCTCTCTGTCCCGGTCTCATCTCTCTCACACCATCATCTCCCCATTCTCCTCTCCCGAGCAACCGTCTCGGGTCTTCTCCTTAAGCTACCGCTGGTCCACTCTGTCCTCCGTTCCCTCTATTTGGGGCCTATCCCATCACTCTCTTTCTCCTTCCTCTCCCTACTTCGCCGTTTTGCCAACATGACACTTGATAACTACTCCCTCAACATTGCCATCTCTGCTGCCGCTCGCGTCCCATCACTTGATGTTGGCTCCCAGTTTCATGCCCTTTCTTTGAAACTCAGCCTAGCTTCAGATTCATTTGTCCTTAATGCCCTTATCAACATGTACTCATCTTGTAATTATCCAGCTTCTGCAAGGTTAGTTCTTGATTCTGCTCCACGATGGGCCTCTGACGTAGTTTCTTGGAACACAATCATTGCTGGATACATACGAGGTGGTATGCCTAATAAGGCGTTGCAATCTTTTCACCAAATGGCCAAAGAGCAAGTTAGGCTGGACGAGGTCACTCTGTTAAATGTGCTGGTTGCTTGTGCAAGGACAGGCGCAATGAAGGTTGGGAGCCTTTGTCATGCTCTAGTTGTGCTGAATGGGTTTGAGATAAATTGTTATATTGGATCCTCTTTGGTTAGTATGTATGCAAAGTGTGGTATGGTTGAGGAAGCTCGCAGGGTTTTTAATAGAATGCCTGAAAGGAATGTAGTTTGCTGGACCTCAATGATTGCTGGATGTACACAATCTGGTAGGTTTAAAGAGGCTGTTGATCTGTTTAGGGACATGCAAATTGCTGGTGTGAAGGCTGATGACGCTACAATTGCTACTGTTGTATCATCATGTGGCCAGATGGGAGCACTTGACTTGGGACGGTATCTCCATGCTTATTGTGATGGTCATGGTTTAGGGAAAGAGCTTTCTGTGAAAAATTCGTTGATTGATATGTACTCGAAGTGCGGGGATGTAAACAAGGCCTATCAGATATTTCATGGATTGACAAAGCGGGATGTGTTTACTTGGACAGTAATGATAATGGGCTTTGCTATGAATGGTCTCTGCGTTGAGGCACTAGATTTGTTTGCACAGATGGAAGGAGAAGATAAGGTTATGCCGAATGAGGTCATTTTTTTGGGTGTGCTAACTGCTTGCAGCCATGGAGGTTTAGTGGAACAGGGGTACCATCACTTCCATCGCATGTCCAAGGTCTACAACCTTGTGCCAAGAATCGAACACTATGGATGCATGGTCGACCTTTTGGGACGTGCCAAGCTGTTGGCAGAGGCAGAGCAATTCATTAAAGATATGCCTGTCGCTCCTGATGTGGTAGTATGGCGGTCATTGTTGTTTGCCTGTAGAGCTTCTGGACAAGTGGGGCTTGCAGAATATGCAGCAGAAAGAATTGAACAGTTGGAACCAAAAAGGTGTGGAGGGCATGTTTTACTCTCTAATGTATATGCTACCACATTAAGATGGGTTGATGTGAATAATGTGCGGACAGGGATGGGCAATAGTAGGACAAGTAAGAAGCCCGGTTGCTCTTTCATTGAAGTCGATGGCTGCATACATGAATTCTTTGCGGGAGATGAGTCTCATTTTGAGACAGAAGCTATATGCAACACTCTTTTTGGGATCAATGAGCTACTAGTGGCGGAGTCCTTCCTAATGTAAAAGCTTAGGAGTTCCATATCAACCAAATATATCCATTTCAAATGTACAATGCTGTGG---TTTTTTTTATCAGCTTA-TGGAATGATGAAATTGAAAATTTGTCTTTAAAAAAAATAAGGA]
[+] EMBL AK070462 [TTCTTCTTCCTTCCACAAAAGCAAGAGGTTCCCCGGAGAGCGCGCCGCCGGCGACAAGGACGACGAGCCGCCTCCCCGAATCGCGACCCCGCCCTATCCTCCTCCTCCTCCTCTGTGCGGCCTGCCCCCCTCGCGCGCACGGCCGGGCCGGCGAGGGGTTGACGTGACGCGGCCGGTCGACCTCCTCCTCCGTCTGCAAGGTTTTGATGTCGGACAACAGTTTACGATATTCCAATAATATCTTAGCTGCAGTATAACACCACTGCCCCCATTCTGTTGCCCTCAAATCAGCTCCATTTAGAGTGTTTAAATGTGCTTATCTTCTCGGATTCTCAATGGGAAGACACGATATTTCTCCACTCTCAGAAGCTCGCACACTGAAAACAAATGTATCCTCTCTGTCCCGGTCTCATCTCTCTCACACCATCATCTCCCCATTCTCCTCTCCCGAGCAACCGTCTCGGGTCTTCTCCTTAAGCTACCGCTGGTCCACTCTGTCCTCCGTTCCCTCTATTTGGGGCCTATCCCATCACTCTCTTTCTCCTTCCTCTCCCTACTTCGCCGTTTTGCCAACATGACACTTGATAACTACTCCCTCAACATTGCCATCTCTGCTGCCGCTCGCGTCCCATCACTTGATGTTGGCTCCCAGTTTCATGCCCTTTCTTTGAAACTCAGCCTAGCTTCAGATTCATTTGTCCTTAATGCCCTTATCAACATGTACTCATCTTGTAATTATCCAGCTTCTGCAAGGTTAGTTCTTGATTCTGCTCCACGATGGGCCTCTGACGTAGTTTCTTGGAACACAATCATTGCTGGATACATACGAGGTGGTATGCCTAATAAGGCGTTGCAATCTTTTCACCAAATGGCCAAAGAGCAAGTTAGGCTGGACGAGGTCACTCTGTTAAATGTGCTGGTTGCTTGTGCAAGGACAGGCGCAATGAAGGTTGGGAGCCTTTGTCATGCTCTAGTTGTGCTGAATGGGTTTGAGATAAATTGTTATATTGGATCCTCTTTGGTTAGTATGTATGCAAAGTGTGGTATGGTTGAGGAAGCTCGCAGGGTTTTTAATAGAATGCCTGAAAGGAATGTAGTTTGCTGGACCTCAATGATTGCTGGATGTACACAATCTGGTAGGTTTAAAGAGGCTGTTGATCTGTTTAGGGACATGCAAATTGCTGGTGTGAAGGCTGATGACGCTACAATTGCTACTGTTGTATCATCATGTGGCCAGATGGGAGCACTTGACTTGGGACGGTATCTCCATGCTTATTGTGATGGTCATGGTTTAGGGAAAGAGCTTTCTGTGAAAAATTCGTTGATTGATATGTACTCGAAGTGCGGGGATGTAAACAAGGCCTATCAGATATTTCATGGATTGACAAAGCGGGATGTGTTTACTTGGACAGTAATGATAATGGGCTTTGCTATGAATGGTCTCTGCGTTGAGGCACTAGATTTGTTTGCACAGATGGAAGGAGAAGATAAGGTTATGCCGAATGAGGTCATTTTTTTGGGTGTGCTAACTGCTTGCAGCCATGGAGGTTTAGTGGAACAGGGGTACCATCACTTCCATCGCATGTCCAAGGTCTACAACCTTGTGCCAAGAATCGAACACTATGGATGCATGGTCGACCTTTTGGGACGTGCCAAGCTGTTGGCAGAGGCAGAGCAATTCATTAAAGATATGCCTGTCGCTCCTGATGTGGTAGTATGGCGGTCATTGTTGTTTGCCTGTAGAGCTTCTGGACAAGTGGGGCTTGCAGAATATGCAGCAGAAAGAATTGAACAGTTGGAACCAAAAAGGTGTGGAGGGCATGTTTTACTCTCTAATGTATATGCTACCACATTAAGATGGGTTGATGTGAATAATGTGCGGACAGGGATGGGCAATAGTAGGACAAGTAAGAAGCCCGGTTGCTCTTTCATTGAAGTCGATGGCTGCATACATGAATTCTTTGCGGGAGATGAGTCTCATTTTGAGACAGAAGCTATATGCAACACTCTTTTTGGGATCAATGAGCTACTAGTGGCGGAGTCCTTCCTAATGTAAAAGCTTAGGAGTTCCATATCAACCAAATATATCCATTTCAAATGTACAATGCTGTGG TTTTTTTTATCAGCTTA TGGAATGATGAAATTGAAAATTTGTCT ]
[+] EMBL CB629298 [ TGTTGCCCTCAAATCAGCTCCATTTAGAGTGTTTAAATGTGCTTATCTTCTCGGATTCTCAATGGGAAGACACGATATTTCTCCACTCTCAGAAGCTCGCACACTGAAAACAAATGTATCCTCTCTGTCCCGGTCTCATCTCTCTCACACCATCATCTCCCCATTCTCCTCTCCCGAGCAACCGTCTCGGGTCTTCTCCTTAAGCTACCGCTGGTCCACTCTGTCCTCCGTTCCCTCTCTTTGGGGCTTACCCCATCACTCTCTTTCTCCTTCCTCTCCCTACTTCGCCGTTTTGCCAACATGACACTTGATAACTACTCCCTCAACATTGCCATCTCTGCTGCCGCTCGCATCCCATCACTTGATGTTGGCTCCCAGTTTCATGCCCTTTCTTTGAAACTCAGCCTAGCTTCAGATTCATTTGTCCTTAATGCCCTTATCAACATGTACTCATCTTGTAATTATCCAGCTTCTGCAAGGTTAGTTCTTGATTCTGCTCCACGATGGGCCTCTGACGTAGTTTCTTGGAACACAATCATTGCTGGATACATACGAGGTGGTATGCCTAATAAGGCGTTGCAATCTTTTCACCAAATGGCCAAAGAGCAAGTTAGGCTGGACGAGGTCACTCTGTTAAATGTGCTGGTTGCTTGTGCAAGGACAGGCGCAATGAAGGTTGGGAGCCTTTGTCATGCTCTAGTTGTGCTGAATGGGTTTGAGATAAATTGTTATATTGGATCCTCTTTGGTTAGTATGTATGCAAAGTGTGGTATGGTTGAGGAAGCTCGCAGGGTTTTTAAT GAATG ]
[+] EMBL AU056444 [ tTTGACNTGGGCCGGTATCTCNATGCTTATTGTGATGGTCATGGTTTAGGGAAAGAGCTTTCTGTGAAAAATTCGTTGATTGATATGTANTCGAAGTGCGGGGATGTAAACAAGGCCTATCAGATATTTCATGGATTGACAAAGCGGGATGTGTTTACTTGGACAGTNATGATAATGGGCTTTGCTAaaaaaaa ]
[-] EMBL CB629299 [ GCGGGATGTGTTTACTTGGACAGTAATGATAATGGGCTTTGCTATGAATGGTCTCTGCGTTGAGGCACTAGATTTGTTTGCACAGATGGAAGGAGAAGATAAGGTTATGCCGAATGAGGTCATTTTTTTGGGTGTGCTAACTGCTTGCAGCCATGGAGGTTTAGTGGAACAGGGGTACCATCACTTCCATCGCATGTCCAAGGTCTACAACCTTGTGCCAAGAATCGAACACTATGGATGCATGGTCGACCTTTTGGGACGTGCCAAGCTGTTGGCAGAGGCAGAGCAATTCATTAAAGATATGCCTGTCGCTCCTGATGTGGTAGTATGGCGGTCATTGTTGTTTGCCTGTAGAGCTTCTGGACAAGTGGGGCTTGCAGAATATGCAGCAGAAAGAATTGAACAGTTGGAACCAAAAAGGTGTGGAGGGCATGTTTTACTCTCTAATGTATATGCTACCACATCAAGATGGGTTGATGTGAATAATGTGCGGACAGGGATGGGCAATAGTAGGACAAGTAAGAAGCCCGGTTGCTCTTTCATTGAAGTCGATGGCTGCATACATGAATTCTTTGCGGGAGATGAGTCTCATTTTGAGACAGAAGCTATATGCAACACTCTTTTTGGGATCAATGAGCTACTAGTGGCGGAGTCCTTCCTAATGTAAAAGCTTAGGAGTTCCATATCAACCAAATATATCCATTTCAAATGTACAATGCTGTGGTTTTTTTTTTTATCAGCTTAGTGGAATGATGAAATTGAAAATTTGTCTTTAAAAAAAATAAGGA]
consensusID : consensus_7850#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 210 fasta sequence
[GGNCGGNACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGATTCTCAATGGGAAGACACGNNATTTCTCCACTNTCAGAAGCTCGNACACTGAAAACAAATGTATCCTCTNTGTCCCGGTCTCATCTCTCTCACACCATCATCTCCCCATTCTCCTCTCCCGAGCAACCGTCTCGGGTCTTCTCCTTAAGCTACC]
[+] EMBL AU162687 [GGNCGGNACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGATTCTCAATGGGAAGACACGNNATTTCTCCACTNTCAGAAGCTCGNACACTGAAAACAAATGTATCCTCTNTGTCCCGGTCTCATCTCTCTCACACCATCATCTCCCCATTCTCCTCTCCCGAGCAACCGTCTCGGGTCTTCTCCTTAAGCTACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7850#0 TTCTTCTTCCTTCCACAAAAGCAAGAGGTTCCCCGGAGAGCGCGCCGCCGGCGACAAGGA 60
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 CGACGAGCCGCCTCCCCGAATCGCGACCCCGCCCTATCCTCCTCCTCCTCCTCTGTGCGG 120
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 CCTGCCCCCCTCGCGCGCACGGCCGGGCCGGCGAGGGGTTGACGTGACGCGGCCGGTCGA 180
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 CCTCCTCCTCCGTCTGCAAGGTTTTGATGTCGGACAACAGTTTACGATATTCCAATAATA 240
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 TCTTAGCTGCAGTATAACACCACTGCCCCCATTCTGTTGCCCTCAAATCAGCTCCATTTA 300
consensus_7850#1 -------------------------------GGNCGGNACGCGTGGGCGGACGCGTGGGC 29
* * * * *
consensus_7850#0 GAGTGTTTAAATGTGCTTATCTTCTCGGATTCTCAATGGGAAGACACGATATTTCTCCAC 360
consensus_7850#1 GGACGCGTGGGCGGACGCGTGGGC--GGATTCTCAATGGGAAGACACGNNATTTCTCCAC 87
* * * * * * * ********************** **********
consensus_7850#0 TCTCAGAAGCTCGCACACTGAAAACAAATGTATCCTCTCTGTCCCGGTCTCATCTCTCTC 420
consensus_7850#1 TNTCAGAAGCTCGNACACTGAAAACAAATGTATCCTCTNTGTCCCGGTCTCATCTCTCTC 147
* *********** ************************ *********************
consensus_7850#0 ACACCATCATCTCCCCATTCTCCTCTCCCGAGCAACCGTCTCGGGTCTTCTCCTTAAGCT 480
consensus_7850#1 ACACCATCATCTCCCCATTCTCCTCTCCCGAGCAACCGTCTCGGGTCTTCTCCTTAAGCT 207
************************************************************
consensus_7850#0 ACCGCTGGTCCACTCTGTCCTCCGTTCCCTCTATTTGGGGCCTATCCCATCACTCTCTTT 540
consensus_7850#1 ACC--------------------------------------------------------- 210
***
consensus_7850#0 CTCCTTCCTCTCCCTACTTCGCCGTTTTGCCAACATGACACTTGATAACTACTCCCTCAA 600
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 CATTGCCATCTCTGCTGCCGCTCGCGTCCCATCACTTGATGTTGGCTCCCAGTTTCATGC 660
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 CCTTTCTTTGAAACTCAGCCTAGCTTCAGATTCATTTGTCCTTAATGCCCTTATCAACAT 720
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 GTACTCATCTTGTAATTATCCAGCTTCTGCAAGGTTAGTTCTTGATTCTGCTCCACGATG 780
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 GGCCTCTGACGTAGTTTCTTGGAACACAATCATTGCTGGATACATACGAGGTGGTATGCC 840
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 TAATAAGGCGTTGCAATCTTTTCACCAAATGGCCAAAGAGCAAGTTAGGCTGGACGAGGT 900
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 CACTCTGTTAAATGTGCTGGTTGCTTGTGCAAGGACAGGCGCAATGAAGGTTGGGAGCCT 960
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 TTGTCATGCTCTAGTTGTGCTGAATGGGTTTGAGATAAATTGTTATATTGGATCCTCTTT 1020
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 GGTTAGTATGTATGCAAAGTGTGGTATGGTTGAGGAAGCTCGCAGGGTTTTTAATAGAAT 1080
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 GCCTGAAAGGAATGTAGTTTGCTGGACCTCAATGATTGCTGGATGTACACAATCTGGTAG 1140
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 GTTTAAAGAGGCTGTTGATCTGTTTAGGGACATGCAAATTGCTGGTGTGAAGGCTGATGA 1200
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 CGCTACAATTGCTACTGTTGTATCATCATGTGGCCAGATGGGAGCACTTGACTTGGGACG 1260
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 GTATCTCCATGCTTATTGTGATGGTCATGGTTTAGGGAAAGAGCTTTCTGTGAAAAATTC 1320
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 GTTGATTGATATGTACTCGAAGTGCGGGGATGTAAACAAGGCCTATCAGATATTTCATGG 1380
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 ATTGACAAAGCGGGATGTGTTTACTTGGACAGTAATGATAATGGGCTTTGCTATGAATGG 1440
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 TCTCTGCGTTGAGGCACTAGATTTGTTTGCACAGATGGAAGGAGAAGATAAGGTTATGCC 1500
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 GAATGAGGTCATTTTTTTGGGTGTGCTAACTGCTTGCAGCCATGGAGGTTTAGTGGAACA 1560
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 GGGGTACCATCACTTCCATCGCATGTCCAAGGTCTACAACCTTGTGCCAAGAATCGAACA 1620
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 CTATGGATGCATGGTCGACCTTTTGGGACGTGCCAAGCTGTTGGCAGAGGCAGAGCAATT 1680
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 CATTAAAGATATGCCTGTCGCTCCTGATGTGGTAGTATGGCGGTCATTGTTGTTTGCCTG 1740
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 TAGAGCTTCTGGACAAGTGGGGCTTGCAGAATATGCAGCAGAAAGAATTGAACAGTTGGA 1800
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 ACCAAAAAGGTGTGGAGGGCATGTTTTACTCTCTAATGTATATGCTACCACATTAAGATG 1860
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 GGTTGATGTGAATAATGTGCGGACAGGGATGGGCAATAGTAGGACAAGTAAGAAGCCCGG 1920
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 TTGCTCTTTCATTGAAGTCGATGGCTGCATACATGAATTCTTTGCGGGAGATGAGTCTCA 1980
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 TTTTGAGACAGAAGCTATATGCAACACTCTTTTTGGGATCAATGAGCTACTAGTGGCGGA 2040
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 GTCCTTCCTAATGTAAAAGCTTAGGAGTTCCATATCAACCAAATATATCCATTTCAAATG 2100
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 TACAATGCTGTGGTTTTTTTTATCAGCTTATGGAATGATGAAATTGAAAATTTGTCTTTA 2160
consensus_7850#1 ------------------------------------------------------------
consensus_7850#0 AAAAAAATAAGGA 2173
consensus_7850#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||