These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7856#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1656 fasta sequence [CTCCCCTCCCCTCCACTCCGCGAGCCGCCACCTCCTCCGCCGCCGACGACGACGACGACGCCGCATCCCCAACCCTAGCCGCCGCTCGGCGGTGCTGCGACGTAGGAGCGGGTCTCCTCTCTGCATGGTCCGTTAGGGCTACCGAGCCGATCGACCGGCGGGCCTAAAACCCTAGCCGAGAGAGGCTGCGGGTTGGGTGGGGGTGGGGGCGTGCTCGACTCTCCGGCGGCGCCATGAAGCTGACGGTGAAGACCCTCAAGGGCACCCAGTTCGAGATCCGGGTGCAGCCCAACGACACCATTATGGCTGTCAAGAAGATCATTGAAGAGATACAAGGAAAGGATAGCTACCCATGGGGCCAACAGTTGCTGATTCACAATGGCAAGGTTTTGAAAGATGAAAGTACATTGGAAGAGAACAAAGTCAGTGAAGTTGGGTTTTTAGTTGTCATGCTTAGTAAGAGTAAAGCTTCTGGTTCCAGTGGAGCTTTAAGTTCACTGACTTCAAGCACCCCTTTGACCAGGCAAGAAACTCCTGCGGATGCTTCACGAGCAGCTCCTCAACCCCTAGTTGCACCTACAAGAACACCCCAGCCCGAAAGGCCACCTGCGGTAGCCCCTTCAAACGCATATGGTCAAGCAGCATCAAATCTATTGTCGGGAAGCAATCTTGACACTACGATTAACCAGCTGATGGAAATGGGTGGTGGCAGTTGGGACAGAGATAAAGTCCAAAGAGCTCTACGTGCAGCTTATAACAACCCAGAGCGTGCTGTTGAATATCTATATTCTGGCATTCCAATTACAGCGGAGGTTGCTGTTCCAGCAGGTGGTCAAGGGGCAAACACAACCGAGCCATCTTCTACTAGGGAAGCCAGTCTGTCTGGAATTCCAAACGCATCCCCGTTAAATCTTTTCCCACAGGGCGATGCAAATGATGGAGGTGGTGCTGGTGGTGGAACACTTGAGTTCCTTAGACATAACCAACAGTTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAGCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATTCAGGAGAACCATGATGAGTTCCTTCAGTTAATAAATGAGCCCTTTGATGGTGCTGATGGGGACTTCTTAGACCAACCTGACCAGGATGAGATGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCTGTGACAGGAACGAGCAACTCGCAGCAAATTACCTTCTTGAACATGCTGCTGATGAAGATTAGATGGAATTATTTAAACCCGCTTATTCTGTACACCTGCCCTG-CAATTTATCAGACTTTTGAAGTTTGCGGGTGCTTTGGATCCAAATTGAACAAGCTGAGATGGAGCTAACACCGCGTTGCATCGATTTATCTCTTGTACAATACTTGCTTTATTTAATTGCTGGCTTAGCATTCAAATACATGGCTTAACATTTATTCGAGCTGTCTGAGGGACGGATCCTTTTGTCCATCCGTTTTTAG-CCAGAAATTTCAATGGATGTGAATTGTGTTGACCACATTTTCTGTCCTGTTTGTGTTATTCAATTCGTGATTT] [+] EMBL AK069065 [CTCCCCTCCCCTCCACTCCGCGAGCCGCCACCTCCTCCGCCGCCGACGACGACGACGACGCCGCATCCCCAACCCTAGCCGCCGCTCGGCGGTGCTGCGACGTAGGAGCGGGTCTCCTCTCTGCATGGTCCGTTAGGGCTACCGAGCCGATCGACCGGCGGGCCTAAAACCCTAGCCGAGAGAGGCTGCGGGTTGGGTGGGGGTGGGGGCGTGCTCGACTCTCCGGCGGCGCCATGAAGCTGACGGTGAAGACCCTCAAGGGCACCCAGTTCGAGATCCGGGTGCAGCCCAACGACACCATTATGGCTGTCAAGAAGATCATTGAAGAGATACAAGGAAAGGATAGCTACCCATGGGGCCAACAGTTGCTGATTCACAATGGCAAGGTTTTGAAAGATGAAAGTACATTGGAAGAGAACAAAGTCAGTGAAGTTGGGTTTTTAGTTGTCATGCTTAGTAAGAGTAAAGCTTCTGGTTCCAGTGGAGCTTTAAGTTCACTGACTTCAAGCACCCCTTTGACCAGGCAAGAAACTCCTGCGGATGCTTCACGAGCAGCTCCTCAACCCCTAGTTGCACCTACAAGAACACCCCAGCCCGAAAGGCCACCTGCGGTAGCCCCTTCAAACGCATATGGTCAAGCAGCATCAAATCTATTGTCGGGAAGCAATCTTGACACTACGATTAACCAGCTGATGGAAATGGGTGGTGGCAGTTGGGACAGAGATAAAGTCCAAAGAGCTCTACGTGCAGCTTATAACAACCCAGAGCGTGCTGTTGAATATCTATATTCTGGCATTCCAATTACAGCGGAGGTTGCTGTTCCAGCAGGTGGTCAAGGGGCAAACACAACCGAGCCATCTTCTACTAGGGAAGCCAGTCTGTCTGGAATTCCAAACGCATCCCCGTTAAATCTTTTCCCACAGGGCGATGCAAATGATGGAGGTGGTGCTGGTGGTGGAACACTTGAGTTCCTTAGACATAACCAACAGTTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAGCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATTCAGGAGAACCATGATGAGTTCCTTCAGTTAATAAATGAGCCCTTTGATGGTGCTGATGGGGACTTCTTAGACCAACCTGACCAGGATGAGATGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCTGTGACAGGAACGAGCAACTCGCAGCAAATTACCTTCTTGAACATGCTGCTGATGAAGATTAGATGGAATTATTTAAACCCGCTTATTCTGTACACCTGCCCTG CAATTTATCAGACTTTTGAAGTTTGCGGGTGCTTTGGATCCAAATTGAACAAGCTGAGATGGAGCTAACACCGCGTTGCATCGATTTATCTCTTGTACAATACTTGCTTTATTTAATTGCTGGCTTAGCATTCAAATACATGGCTTAACATTTATTCGAGCTGTCTGAGGGACGGATCCTTTTGTCCATCCGTTTTTAG CCAGAAATTTCAATGGATGTGAATTGTGTTGACCACATTTTCTGTCCTGTTTGTGTTATTCAATTCGTGATTT] [+] EMBL CB641342 [ CCTCCGCCGCCGACGACGACGACGACGCCGCATCCCCAACCCTAGCCGCCGCTCGGCGGTGCTGCGACGTAGGAGCGGGTCTCCTCTCTGCATGATCCGTTAGGGCTACCGAGCCGATCGACCGGCGGGCCTAAAACCCTAGCCGAGAGAGGCTGCGGGTTGG ] [+] EMBL AK104908 [ TCATGCTTAGTAAGAGTAAAGCTTCTGGTTCCAGTGGAGCTTTAAGTTCACTGACTTCAAGCACCCCTTTGACCAGGCAAGAAACTCCTGCGGATGCTTCACGAGCAGCTCCTCAACCCCTAGTTGCACCTACAAGAACACCCCAGCCCGAAAGGCCACCTGCGGAAGCCCCTTCAAACGCATATGGTCAAGCAGCATCAAATCTATTGTCGGGAAGCAATCTTGACACTACGATTAACCAGCTGATGGAAATGGGTGGTGGCAGTTGGGACAGAGATAAAGTCCAAAGAGCTCTACGTGCAGCTTATAACAACCCAGAGCGTGCTGTTGAATATCTATATTCTGGCATTCCAATTACAGCGGAGGTTGCTGTTCCAGCAGGTGGTCAAGGGGCAAACACAACCGAGCCATCTTCTACTAGGGAAGCCAGTCTGTCTGGAATTCCAAACGCATCCCCGTTAAATCTTTTCCCACAGGGCGATGCAAATGATGGAGGTGGTGCTGGTGGTGGAACACTTGAGTTCCTTAGACATAACCAACAGTTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAGCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATTCAGGAGAACCATGATGAGTTCCTTCAGTTAATAAATGAGCCCTTTGATGGTGCTGATGGGGACTTCTTAGACCAACCTGACCAGGATGAGATGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCTGTGACAGGAACGAGCAACTCGCAGCAAATTACCTTCTTGAACATGCTGCTGATGAAGATTAGATGGAATTATTTAAACCCGCTTATTCTGTACACCTGCCCTG CAATTTATCAGACTTTTGAAGTTTGCGGGTGCTTTGGATCCAAATTGAACAAGCTGAGATGGAGCTAACACCGCGTTGCATCGATTTATCTCTTGTACAATACTTGCTTTATTTAATTGCTGGCTTAGCATTCAAATACATGGCTTAACATTTATTCGAGCTGTCTGAGGGACGGATCCTTTTGTCCATCCGTTTTTAG CCAGAAATTTCAATGGATGTGAAT ] [+] EMBL BI807161 [ GAGGCGATTGGACGGCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCTGTGACAGGAACGAGCCACTCGCAGCNAATTACCTTCTTGAACATGCTGCTGATGAAGATTAGATGGAATTATTTAAACCCGCTTATTCTGTACACCTGCCCTGCCNATTTATCAGACTTTGGAAGTTTGCGGGTGCTTTGGATCCCAATTGAACCAGCTGAGATGGAGCTAACCCCGCGTTGCATCGATTTATCTCTTGTACCATACTTGCTTTATTTAATTGCTGGCTTAGCATTCAAATACCTGGCTTAACATTTATTCGAGCTGTCTGAGGGACGGATCCTTTTGTCCATCCGTTTTTAGCCCAGAAATTTCCATGGATGTGAATTGTGTTGAaaaaaaaaa ] consensusID : consensus_7856#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [AGAACCNTGANGNGNTCCTTCAGTTAATAAATGAGCCCTTTGATGGTGCTGATGGGGACTTCTTAGACCAACCTGACCAGGATGAGATGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGCTTGAAGGCATGGGATTTGACAGAGCACGNGTCATCGAAGCATTCTTCGCCTGTGACAGGAATGAGCAACTCGCAGCAAATTACCTTCTTGAACATGCTGCTGATGAAGATTAGATGGAATTATTTAAACCCGCTTATTCTGTACACCTGCCCTGCAATTTATCAGACTTTGGAAGTTTGCGGGTGCTTTGGATCCAAATTGAACAAGCTGAGATGGAGCTAACACCGCGTTGCATCGATTTATCTCTTGTACAATACTTGCTTTATTTAATTGCTGGCTTAGCATTCAAATACATGGCTTAACATTTATTCGAGCTGTCTGAGGGACGGATCCTTTTGTCCATCCGGTTTTAGCCAGAAATTTCAATGGATGGGAATTGNGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAGCGGGCCGGCANCCGN] [+] EMBL CA765529 [AGAACCNTGANGNGNTCCTTCAGTTAATAAATGAGCCCTTTGATGGTGCTGATGGGGACTTCTTAGACCAACCTGACCAGGATGAGATGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGCTTGAAGGCATGGGATTTGACAGAGCACGNGTCATCGAAGCATTCTTCGCCTGTGACAGGAATGAGCAACTCGCAGCAAATTACCTTCTTGAACATGCTGCTGATGAAGATTAGATGGAATTATTTAAACCCGCTTATTCTGTACACCTGCCCTGCAATTTATCAGACTTTGGAAGTTTGCGGGTGCTTTGGATCCAAATTGAACAAGCTGAGATGGAGCTAACACCGCGTTGCATCGATTTATCTCTTGTACAATACTTGCTTTATTTAATTGCTGGCTTAGCATTCAAATACATGGCTTAACATTTATTCGAGCTGTCTGAGGGACGGATCCTTTTGTCCATCCGGTTTTAGCCAGAAATTTCAATGGATGGGAATTGNGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAGCGGGCCGGCANCCGN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7856#0 CTCCCCTCCCCTCCACTCCGCGAGCCGCCACCTCCTCCGCCGCCGACGACGACGACGACG 60 consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 CCGCATCCCCAACCCTAGCCGCCGCTCGGCGGTGCTGCGACGTAGGAGCGGGTCTCCTCT 120 consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 CTGCATGGTCCGTTAGGGCTACCGAGCCGATCGACCGGCGGGCCTAAAACCCTAGCCGAG 180 consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 AGAGGCTGCGGGTTGGGTGGGGGTGGGGGCGTGCTCGACTCTCCGGCGGCGCCATGAAGC 240 consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 TGACGGTGAAGACCCTCAAGGGCACCCAGTTCGAGATCCGGGTGCAGCCCAACGACACCA 300 consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 TTATGGCTGTCAAGAAGATCATTGAAGAGATACAAGGAAAGGATAGCTACCCATGGGGCC 360 consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 AACAGTTGCTGATTCACAATGGCAAGGTTTTGAAAGATGAAAGTACATTGGAAGAGAACA 420 consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 AAGTCAGTGAAGTTGGGTTTTTAGTTGTCATGCTTAGTAAGAGTAAAGCTTCTGGTTCCA 480 consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 GTGGAGCTTTAAGTTCACTGACTTCAAGCACCCCTTTGACCAGGCAAGAAACTCCTGCGG 540 consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 ATGCTTCACGAGCAGCTCCTCAACCCCTAGTTGCACCTACAAGAACACCCCAGCCCGAAA 600 consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 GGCCACCTGCGGTAGCCCCTTCAAACGCATATGGTCAAGCAGCATCAAATCTATTGTCGG 660 consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 GAAGCAATCTTGACACTACGATTAACCAGCTGATGGAAATGGGTGGTGGCAGTTGGGACA 720 consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 GAGATAAAGTCCAAAGAGCTCTACGTGCAGCTTATAACAACCCAGAGCGTGCTGTTGAAT 780 consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 ATCTATATTCTGGCATTCCAATTACAGCGGAGGTTGCTGTTCCAGCAGGTGGTCAAGGGG 840 consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 CAAACACAACCGAGCCATCTTCTACTAGGGAAGCCAGTCTGTCTGGAATTCCAAACGCAT 900 consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 CCCCGTTAAATCTTTTCCCACAGGGCGATGCAAATGATGGAGGTGGTGCTGGTGGTGGAA 960 consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 CACTTGAGTTCCTTAGACATAACCAACAGTTTCAGGCGCTTCGGGAAATGGTTCATACTA 1020 consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 ACCCACAAATATTGCAGCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGA 1080 consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 GGTTGATTCAGGAGAACCATGATGAGTTCCTTCAGTTAATAAATGAGCCCTTTGATGGTG 1140 consensus_7856#1 ------------AGAACCNTGANGNGNTCCTTCAGTTAATAAATGAGCCCTTTGATGGTG 48 ****** *** * * ********************************* consensus_7856#0 CTGATGGGGACTTCTTAGACCAACCTGACCAGGATGAGATGCCCCATTCTATCAATGTCA 1200 consensus_7856#1 CTGATGGGGACTTCTTAGACCAACCTGACCAGGATGAGATGCCCCATTCTATCAATGTCA 108 ************************************************************ consensus_7856#0 CACCTGAAGAGCAAGAGGCGATTGGACGGCTTGAAGGCATGGGATTTGACAGAGCACGTG 1260 consensus_7856#1 CACCTGAAGAGCAAGAGGCGATTGGACGGCTTGAAGGCATGGGATTTGACAGAGCACGNG 168 ********************************************************** * consensus_7856#0 TCATCGAAGCATTCTTCGCCTGTGACAGGAACGAGCAACTCGCAGCAAATTACCTTCTTG 1320 consensus_7856#1 TCATCGAAGCATTCTTCGCCTGTGACAGGAATGAGCAACTCGCAGCAAATTACCTTCTTG 228 ******************************* **************************** consensus_7856#0 AACATGCTGCTGATGAAGATTAGATGGAATTATTTAAACCCGCTTATTCTGTACACCTGC 1380 consensus_7856#1 AACATGCTGCTGATGAAGATTAGATGGAATTATTTAAACCCGCTTATTCTGTACACCTGC 288 ************************************************************ consensus_7856#0 CCTGCAATTTATCAGACTTTTGAAGTTTGCGGGTGCTTTGGATCCAAATTGAACAAGCTG 1440 consensus_7856#1 CCTGCAATTTATCAGACTTTGGAAGTTTGCGGGTGCTTTGGATCCAAATTGAACAAGCTG 348 ******************** *************************************** consensus_7856#0 AGATGGAGCTAACACCGCGTTGCATCGATTTATCTCTTGTACAATACTTGCTTTATTTAA 1500 consensus_7856#1 AGATGGAGCTAACACCGCGTTGCATCGATTTATCTCTTGTACAATACTTGCTTTATTTAA 408 ************************************************************ consensus_7856#0 TTGCTGGCTTAGCATTCAAATACATGGCTTAACATTTATTCGAGCTGTCTGAGGGACGGA 1560 consensus_7856#1 TTGCTGGCTTAGCATTCAAATACATGGCTTAACATTTATTCGAGCTGTCTGAGGGACGGA 468 ************************************************************ consensus_7856#0 TCCTTTTGTCCATCCGTTTTTAGCCAGAAATTTCAATGGATGTGAATTGTGTTGACCACA 1620 consensus_7856#1 TCCTTTTGTCCATCCGGTTTTAGCCAGAAATTTCAATGGATGGGAATTGNGGTGA--AAA 526 **************** ************************* ****** * *** * * consensus_7856#0 TTTTCTGTCCTGTTTGTGTTATTCAATTCGTGATTT-- 1656 consensus_7856#1 AAAAAAAAAAAAAAAAAAAAAAGCGGGCCGGCANCCGN 564 * * ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||