These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7857#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1128 fasta sequence [TTCTTCTCGTCTCCATCGCTGCAGGAGGAGGAGGCGGCGGAGGACGGCGAGCGGTCAGTGGCGGAGAGGGGAGTGTTCGGGGACGCGGGGTTTGCGAGGTGGGGGGAGCTCTTGCGCCTCGGATCGGCTCACTTCCCGACGCCTCAGCCCCCGCCGCGCCGCGGATTATTGCTGTTAGGTTAAAGGGATTGTGGTAGCGAGAAGCGGTGGGGTTGATGGAGTGCGTGGTGCAGGGGATCATCGAGACCCAGCATGTTGATGCTCTTGAGGTTCTTCTCCAGGGCCTCTCTGGTGTCCCAAAAGAACGTGTCAGAGTGCATGAGCTCTGTCTTAAAAGT-GGGCCAAATCTAGGAGTTGT-CCCATCA-GAGGTTCGTTTATTGTGTGACTTAGCTCAGTCCACGCCATCCTGGACCATAAGACATGTTGGAGGTGCCATGAGAGGTGCTGGTGCAGAGCAAATCTCAGTCCTTGTGCGGTCAATTGTAGAGAGCAAAGCCAGCAACAATGTATTGCGTTACTTCTACGGTATAGGGTACAAGTTAGATCATGAAGTTCTGAAGGGAGGATTTGCATTTCGTTTCCACCGAGGTGCCCAGATAACTGTGACCGTTACCTCTGTTAGCAAGATGACAAAACTCCATGCTACCAACGAAGCTGTGCCAATCACTCCTGCAATACAGCTAGTGGAAATCACGGCCCCTGCTGCTGCTGACAATTACAACGATGTCGTTTCAGCCGTCACTTCGTTCTGTGAATATCTAGCACCGCTTCTGCATCTCTCTAAACCAGGCAATTCGACTGGAATCGTCCCGACTGCAGGCGCTGCTGCCGCCTCACTCATGTCAAGTGGTGGTGGTGGTGGTGGTAAAACGTTGTGATCGGTCATATGTGTTGGCTGCAATGCCATGATGATCTCCATTGACCATCCCACTTAAAACATTGTTGCCATCTTTAGTTCTGTAACTTTTAGTCAGTAGCACCATGGTTTTTCTTGTAATGACATGCTAAATGCTGCCTACCTTGCTTTGGAGACTGGTAAATGAACACTGATCATTGCTTGCTTTTACTGAAGAGTGGAAACTGAATGCTGGGAAAGCTTGACGATAAAAAAAAAAAAAAAAAAAACTC] [+] EMBL AK069578 [TTCTTCTCGTCTCCATCGCTGCAGGAGGAGGAGGCGGCGGAGGACGGCGAGCGGTCAGTGGCGGAGAGGGGAGTGTTCGGGGACGCGGGGTTTGCGAGGTGGGGGGAGCTCTTGCGCCTCGGATCGGCTCACTTCCCGACGCCTCAGCCCCCGCCGCGCCGCGGATTATTGCTGTTAGGTTAAAGGGATTGTGGTAGCGAGAAGCGGTGGGGTTGATGGAGTGCGTGGTGCAGGGGATCATCGAGACCCAGCATGTTGATGCTCTTGAGGTTCTTCTCCAGGGCCTCTCTGGTGTCCCAAAAGAACGTGTCAGAGTGCATGAGCTCTGTCTTAAAAGT GGGCCAAATCTAGGAGTTGT CCCATCA GAGGTTCGTTTATTGTGTGACTTAGCTCAGTCCACGCCATCCTGGACCATAAGACATGTTGGAGGTGCCATGAGAGGTGCTGGTGCAGAGCAAATCTCAGTCCTTGTGCGGTCAATTGTAGAGAGCAAAGCCAGCAACAATGTATTGCGTTACTTCTACGGTATAGGGTACAAGTTAGATCATGAAGTTCTGAAGGGAGGATTTGCATTTCGTTTCCACCGAGGTGCCCAGATAACTGTGACCGTTACCTCTGTTAGCAAGATGACAAAACTCCATGCTACCAACGAAGCTGTGCCAATCACTCCTGCAATACAGCTAGTGGAAATCACGGCCCCTGCTGCTGCTGACAATTACAACGATGTCGTTTCAGCCGTCACTTCGTTCTGTGAATATCTAGCACCGCTTCTGCATCTCTCTAAACCAGGCAATTCGACTGGAATCGTCCCGACTGCAGGCGCTGCTGCCGCCTCACTCATGTCAAGTGGTGGTGGTGGTGGTGGTAAAACGTTGTGATCGGTCATATGTGTTGGCTGCAATGCCATGATGATCTCCATTGACCATCCCACTTAAAACATTGTTGCCATCTTTAGTTCTGTAACTTTTAGTCAGTAGCACCATGGTTTTTCTTGTAATGACATGCTAAATGCTGCCTACCTTGCTTTGGAGACTGGTAAATGAACACTGATCATTGCTTGCTTTTACTGAAGAGTGGAAACTGAATGCTGGGA ] [+] EMBL AK104014 [ GGAGGAGGAGGCGGCGGAGGACGGCGAGCGGTCAGTGGCGGAGAGGGGAGTGTTCGGGGACGCGGGGTTTGCGAGGTGGGGGGAGCTCTTGCGCCTCGGATCGGCTCACTTCCCGACGCCTCAGCCCCCGCCGCGCCGCGGATTATTGCTGTTAGGTTAAAGGGATTGTGGTAGCGAGAAGCGGTGGGGTTGATGGAGTGCGTGGTGCAGGGGATCATCGAGACCCAGCATGTTGATGCTCTTGAGGTTCTTCTCCAGGGCCTCTCTGGTGTCCCAAAAGAACGTGTCAGAGTGCATGAGCTCTGTCTTAAAAGT GGGCCAAATCTAGGAGTTGT CCCATCA GAGGTTCGTTTATTGTGTGACTTAGCTCAGTCCACGCCATCCTGGACCATAAGACATGTTGGAGGTGCCATGAGAGGTGCTGGTGCAGAGCAAATCTCAGTCCTTGTGCGGTCAATTGTAGAGAGCAAAGCCAGCAACAATGTATTGCGTTACTTCTACGGTATAGGGTACAAGTTAGATCATGAAGTTCTGAAGGGAGGATTTGCATTTCGTTTCCACCGAGGTGCCCAGATAACTGTGACCGTTACCTCTGTTAGCAAGATGACAAAACTCCATGCTACCAACGAAGCTGTGCCAATCACTCCTGCAATACAGCTAGTGGAAATCACGGCCCCTGCTGCTGCTGACAATTACAACGATGTCGTTTCAGCCGTCACTTCGTTCTGTGAATATCTAGCACCGCTTCTGCATCTCTCTAAACCAGGCAATTCGACTGGAATCGTCCCGACTGCAGGCGCTGCTGCCGCCTCACTCATGTCAAGTGGTGGTGGTGGTGGTGGTAAAACGTTGTGATCGGTCATATGTGTTGGCTGCAATGCCATGATGATCTCCATTGACCATCCCACTTAAAACATTGTTGCCATCTTTAGTTCTGTAACTTTTAGTCAGTAGCACCATGGTTTTTCTTGTAATGACATGCTAAATGCTGCCTACCTTGCTTTGGAGACTGGTAAATGAACACTGATCATT ] [+] EMBL C91801 [ GAGGACGGCGAGCGGTCAGTGGCGGAGAGGGGAGTGTTCGGGGACGCGGGGTTTGCGAGGTGGGGGGAGCTCTTGCGCCTCGGATCGGCTCACTTCCCGACGCCTCAGCCCCCGCCGCGCCGCGATTTATTGCTGTNAGGTTAAAGGGATTGTGGTAGCGAGAAGCGGTGGGGTTGATGGAGTNCGTNGTGCAGGGGATCATCGANACCCAGCATGTTGATGCTCTTGAGGTTCTTCTCCAGGGCCTCTCTGGTGTNCCAAAAGAACGTGTCANAGTGCATTAANCCTGTCTTAAAAGTNGGGCCAAATCTAGGAGTTGTCCCCATCANGAGGT ] [-] EMBL CF322671 [ CAAAACTCCATGCTACCAACGAAGCTGTGCCAATCACTCCTGCAATACAGCTAGTGGAAATCACGGCCCCTGCTGCTGCTGACAATTACAACGATGTCGTTTCAGCCGTCACTTCGTTCTGTGAATATCTAGCACCGCTTCTGCATCTCTCTAAACCAGGCAATTCGACTGGAATCGTCCCGACTGCAGGCGCTGCTGCCGCCTCACTCATGTCAAGTGGTGGTGGTGGTGGTGGTAAAACGTTGTGATCGGTCATATGTGTTGGCTGCAATGCCATGATGATCTCCATTGACCATCCCACTTAAAACATTGTTGCCATCTTTAGTTCTGTAACTTTTAGTCAGTAGCACCATGGTTTTTCTTGTAATGACATGCTAAATGCTGCCTACCTTGCTTTGGAGACTGGTAAATGAACACTGATCATTGCTTGCTTTTACTGAAGAGTGGAAACTGAATGCTGGGAAAGCTTGACGATAAAAAAAAAAAAAAAAAAAACTC] consensusID : consensus_7857#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 137 fasta sequence [GTAACTTTTAGTCAGTAGCNCCATGGTTTTTCTTGTAATGACATGCTAAATGCTGCCTACCTTGCTTTGGAGANTGGTAAATGAACACTGATNATTGCTTGNTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU094768 [GTAACTTTTAGTCAGTAGCNCCATGGTTTTTCTTGTAATGACATGCTAAATGCTGCCTACCTTGCTTTGGAGANTGGTAAATGAACACTGATNATTGCTTGNTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7857#0 TTCTTCTCGTCTCCATCGCTGCAGGAGGAGGAGGCGGCGGAGGACGGCGAGCGGTCAGTG 60 consensus_7857#1 ------------------------------------------------------------ consensus_7857#0 GCGGAGAGGGGAGTGTTCGGGGACGCGGGGTTTGCGAGGTGGGGGGAGCTCTTGCGCCTC 120 consensus_7857#1 ------------------------------------------------------------ consensus_7857#0 GGATCGGCTCACTTCCCGACGCCTCAGCCCCCGCCGCGCCGCGGATTATTGCTGTTAGGT 180 consensus_7857#1 ------------------------------------------------------------ consensus_7857#0 TAAAGGGATTGTGGTAGCGAGAAGCGGTGGGGTTGATGGAGTGCGTGGTGCAGGGGATCA 240 consensus_7857#1 ------------------------------------------------------------ consensus_7857#0 TCGAGACCCAGCATGTTGATGCTCTTGAGGTTCTTCTCCAGGGCCTCTCTGGTGTCCCAA 300 consensus_7857#1 ------------------------------------------------------------ consensus_7857#0 AAGAACGTGTCAGAGTGCATGAGCTCTGTCTTAAAAGTGGGCCAAATCTAGGAGTTGTCC 360 consensus_7857#1 ------------------------------------------------------------ consensus_7857#0 CATCAGAGGTTCGTTTATTGTGTGACTTAGCTCAGTCCACGCCATCCTGGACCATAAGAC 420 consensus_7857#1 ------------------------------------------------------------ consensus_7857#0 ATGTTGGAGGTGCCATGAGAGGTGCTGGTGCAGAGCAAATCTCAGTCCTTGTGCGGTCAA 480 consensus_7857#1 ------------------------------------------------------------ consensus_7857#0 TTGTAGAGAGCAAAGCCAGCAACAATGTATTGCGTTACTTCTACGGTATAGGGTACAAGT 540 consensus_7857#1 ------------------------------------------------------------ consensus_7857#0 TAGATCATGAAGTTCTGAAGGGAGGATTTGCATTTCGTTTCCACCGAGGTGCCCAGATAA 600 consensus_7857#1 ------------------------------------------------------------ consensus_7857#0 CTGTGACCGTTACCTCTGTTAGCAAGATGACAAAACTCCATGCTACCAACGAAGCTGTGC 660 consensus_7857#1 ------------------------------------------------------------ consensus_7857#0 CAATCACTCCTGCAATACAGCTAGTGGAAATCACGGCCCCTGCTGCTGCTGACAATTACA 720 consensus_7857#1 ------------------------------------------------------------ consensus_7857#0 ACGATGTCGTTTCAGCCGTCACTTCGTTCTGTGAATATCTAGCACCGCTTCTGCATCTCT 780 consensus_7857#1 ------------------------------------------------------------ consensus_7857#0 CTAAACCAGGCAATTCGACTGGAATCGTCCCGACTGCAGGCGCTGCTGCCGCCTCACTCA 840 consensus_7857#1 ------------------------------------------------------------ consensus_7857#0 TGTCAAGTGGTGGTGGTGGTGGTGGTAAAACGTTGTGATCGGTCATATGTGTTGGCTGCA 900 consensus_7857#1 ------------------------------------------------------------ consensus_7857#0 ATGCCATGATGATCTCCATTGACCATCCCACTTAAAACATTGTTGCCATCTTTAGTTCTG 960 consensus_7857#1 -----------------------------------------------------------G 1 * consensus_7857#0 TAACTTTTAGTCAGTAGCACCATGGTTTTTCTTGTAATGACATGCTAAATGCTGCCTACC 1020 consensus_7857#1 TAACTTTTAGTCAGTAGCNCCATGGTTTTTCTTGTAATGACATGCTAAATGCTGCCTACC 61 ****************** ***************************************** consensus_7857#0 TTGCTTTGGAGACTGGTAAATGAACACTGATCATTGCTTGCTTTTACTGAAGAGTGGAAA 1080 consensus_7857#1 TTGCTTTGGAGANTGGTAAATGAACACTGATNATTGCTTGNTTTTAAAAAAAAAAAAAAA 121 ************ ****************** ******** ***** ** * *** consensus_7857#0 CTGAATGCTGGGAAAGCTTGACGATAAAAAAAAAAAAAAAAAAAACTC 1128 consensus_7857#1 AAAAAAAAAAAAAAAA-------------------------------- 137 ** *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||