These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7860#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1400 fasta sequence [TGCATGTATTAAACACAAAAGGCCACAGAGAAAGCCACCGAAATTGAGGCTATATAAGCTCACATCCACCTCACCCCAACCAAAGAGAAGATTTCATCAGTTCAGTTCAGACAGCTCTCCTCTCCTCACACTCAGCTTCACTCTCTTCCAAAACCCACACTAACCCAAGTCTCCAAGAAGGCAAGAGTCGCCGTCGCCGTCGCCGCCGGCCACGCCGTGTGCTAGCTAGCTAGAGCTGTGCACGATACAGTGTGCTGCGACCATGGCGGCCGCCGGAGCAGCGTTGCGGCTGCGCCTCCTCTACCGGATGCTGCGGGTGGGCGAGCTCCTCGCGCTCGTGGTGTTCTTGTCGTGGTCTTCTTCCCGCGTGCCGGCCGCCGCCGCCGCCGTGGTGCGGCTCGCCGGGTCGCTCCTGCTCAACGCCCGGTTCGTGTTCGTCCTCGGCAACGCCATCGTGCTCCTGCTCCTCGCGCTCTCCAGGCACGACCTCTCCATCTCTTCCAACCACGGCACCACCACCACCGCCGCCGCCGCCGCCGTCTCCAGCGACAGCGCTGGCGCCGGGTCCACGCCAGCGTCGACGACAGCGCCACCCGCCGCCAGCTTCCCTCTGTTCATCGTCCCGCAGCCATCACCGCCGCCGCCTCACGCCACCG-AGG-CCCCGGTGGTGGCAGCGCCTCCGGCGCCCGTGGTCCCCTGCGCCCCGTCGGTGGCGCCGGCAGCGCCGGCGGCGGCGGCGGCGTTCGAGGACAAGCAGGCGGTGCGCGTCAACAAGGCACGCGCGCCGAGGCGGAGCAGGTCGGAGAAGATGGGCTCGCGCGGCGCGTTCCGGCGGGCGGTGTCGCCGGAGCTGCGGCGGTCGGAGTCGGACAACGGGCGCAGGCGGCGGTCGTCGGTGACGGCGCGCGACGCGGAGGTGTGCTGGGGCGCGGACGACGCGGAGGAGTTCCGGCGGACGGTGGAGGCGTCCATCGCCAAGCAAACGAGGTTCCACCGCGAGGAGTCGATGACCATGACCATGTCCATCGTCGCCGGCGTCGGCCACGGCGAGGTGGCGCCGGCCATCGCCGGAGCACTCGCAGTCGTGGAATAAGTTGGCCTCACATGTCAGTGGAGAAAAAGAAAAAAAATCCCTGTGAAAAAGTACATAAAATGGAGAATTGAAGCTCTCCTTGGCTACATCTTGTGTGCACGTTTTGCCTTGCCTTGTTCTTGTTCCTGGCCTCCCTACTCTTTTTTTTTCGTTTGCACGATCATCGAGGTTTTACAGCCGTTGGATGGTGGATCCGACGGTGGTAACAGCGTTGGATGAAAATCTGAGGGGGTACTTTCGGGAGAGAGGGGCTAAACTCTCCCAAACACCCCCTGAAGCTGTTGGTTGCGAGATGGTTCTACTATTT] [-] EMBL AK110257 [TGCATGTATTAAACACAAAAGGCCACAGAGAAAGCCACCGAAATTGAGGCTATATAAGCTCACATCCACCTCACCCCAACCAAAGAGAAGATTTCATCAGTTCAGTTCAGACAGCTCTCCTCTCCTCACACTCAGCTTCACTCTCTTCCAAAACCCACACTAACCCAAGTCTCCAAGAAGGCAAGAGTCGCCGTCGCCGTCGCCGCCGGCCACGCCGTGTGCTAGCTAGCTAGAGCTGTGCACGATACAGTGTGCTGCGACCATGGCGGCCGCCGGAGCAGCGTTGCGGCTGCGCCTCCTCTACCGGATGCTGCGGGTGGGCGAGCTCCTCGCGCTCGTGGTGTTCTTGTCGTGGTCTTCTTCCCGCGTGCCGGCCGCCGCCGCCGCCGTGGTGCGGCTCGCCGGGTCGCTCCTGCTCAACGCCCGGTTCGTGTTCGTCCTCGGCAACGCCATCGTGCTCCTGCTCCTCGCGCTCTCCAGGCACGACCTCTCCATCTCTTCCAACCACGGCACCACCACCACCGCCGCCGCCGCCGCCGTCTCCAGCGACAGCGCTGGCGCCGGGTCCACGCCAGCGTCGACGACAGCGCCACCCGCCGCCAGCTTCCCTCTGTTCATCGTCCCGCAGCCATCACCGCCGCCGCCTCACGCCACCG AGG CCCCGGTGGTGGCAGCGCCTCCGGCGCCCGTGGTCCCCTGCGCCCCGTCGGTGGCGCCGGCAGCGCCGGCGGCGGCGGCGGCGTTCGAGGACAAGCAGGCGGTGCGCGTCAACAAGGCACGCGCGCCGAGGCGGAGCAGGTCGGAGAAGATGGGCTCGCGCGGCGCGTTCCGGCGGGCGGTGTCGCCGGAGCTGCGGCGGTCGGAGTCGGACAACGGGCGCAGGCGGCGGTCGTCGGTGACGGCGCGCGACGCGGAGGTGTGCTGGGGCGCGGACGACGCGGAGGAGTTCCGGCGGACGGTGGAGGCGTCCATCGCCAAGCAAACGAGGTTCCACCGCGAGGAGTCGATGACCATGACCATGTCCATCGTCGCCGGCGTCGGCCACGGCGAGGTGGCGCCGGCCATCGCCGGAGCACTCGCAGTCGTGGAATAAGTTGGCCTCACATGTCAGTGGAGAAAAAGAAAAAAAATCCCTGTGAAAAAGT ] [+] EMBL CA754860 [ GCTCTCCTCTCCTCACACTCAGCTTCACTCTCTTCCAAAACCCACACTAACCCAAGTCTCCAAGAAGGCAAGAGTCGCCGTCGCCGTCGCCGCCGGCCACGCCGTGTGCTAGCTAGCTAGAGCTGTGCACGATACAGTGTGCTGCGACCATGGCGGCCGCCGGAGCAGCGTTGCGGCTGCGCCTCCTCTACCGGATGCTGCGGGTGGGCGAGCTCCTCGCGCTCGTGGTGTTCTTGTCGTGGTCTTCTTCCCGCGTGCCGGCCGCCGCCGCCGCCGTGGTGCGGCTCGCCGGGTCGCTCCTGCTCAACGCCCGGTTCGTGTTCGTCCTCGGCAACGCCATCGTGCTCCTGCTCCTCGCGCTCTCCAGGCACGACCTCTCCATCTCTTCCAACCACGGNACCACCACCACCGCCGCCGCCGCCGCCGTCTCCAGCGACAGCGCTGGCGCCGGGTCCACGCCAGCGTCGACGACAGCGCCACCCGCCGCCAGCTTCCCTCTGTTCATCGTCCCGCAGCCATCACCGCCGCCGCCTCACGCCACCGAAGGCCCCCGGTGGTGGCAGCGCCTCCGGCGCCCGTGGTCCCCTGCGCCCCGTCGGTGGCGCCGGCAG ] [+] EMBL CA754808 [ GCTCTCCTCTCCTCACACTCAGCTTCACTCTCTTCCAAAACCCACACTAACCCAAGTCTCCAAGAAGGCAAGAGTCGCCGTCGCCGTCGCCGCCGGCCACGCCGTGTGCTAGCTAGCTAGAGCTGTGCACGATACAGTGTGCTGCGACCATGGCGGCCGCCGGAGCAGCGTTGCGGCTGCGCCTCCTCTACCGG ] [+] EMBL AK108181 [ CTCCTCACACTCAGCTTCACTCTCTTCCAAAACCCACACTAACCCAAGTCTCCAAGAAGGCAAGAGTCGCCGTCGCCGTCGCCGCCGGCCACGCCGTGTGCTAGCTAGCTAGAGCTGTGCACGATACAGTGTGCTGCGACCATGGCGGCCGCCGGAGCAGCGTTGCGGCTGCGCCTCCTCTACCGGATGCTGCGGGTGGGCGAGCTCCTCGCGCTCGTGGTGTTCTTGTCGTGGTCTTCTTCCCGCGTGCCGGCCGCCGCCGCCGCCGTGGTGCGGCTCGCCGGGTCGCTCCTGCTCAACGCCCGGTTCGTGTTCGTCCTCGGCAACGCCATCGTGCTCCTGCTCCTCGCGCTCTCCAGGCACGACCTCTCCATCTCTTCCAACCACGGCACCACCACCACCGCCGCCGCCGCCGCCGTCTCCAGCGACAGCGCTGGCGCCGGGTCCACGCCAGCGTCGACGACAGCGCCACCCGCCGCCAGCTTCCCTCTGTTCATCGTCCCGCAGCCATCACCGCCGCCGCCTCACGCCACCG AGG CCCCGGTGGTGGCAGCGCCTCCGGCGCCCGTGGTCCCCTGCGCCCCGTCGGTGGCGCCGGCAGCGCCGGCGGCGGCGGCGGCGTTCGAGGACAAGCAGGCGGTGCGCGTCAACAAGGCACGCGCGCCGAGGCGGAGCAGGTCGGAGAAGATGGGCTCGCGCGGCGCGTTCCGGCGGGCGGTGTCGCCGGAGCTGCGGCGGTCGGAGTCGGACAACGGGCGCAGGCGGCGGTCGTCGGTGACGGCGCGCGACGCGGAGGTGTGCTGGGGCGCGGACGACGCGGAGGAGTTCCGGCGGACGGTGGAGGCGTTCATCGCCAAGCAAACGAGGTTCCACCGCGAGGAGTCGATGACCATGACCATGTCCATCGTCGCCGGCGTCGGCCACGGCGAGGTGGCGCCGGCCATCGCCGGAGCACTCGCAGTCGTGGAATAAGTTGGCCTCACATGTCAGTGGAG AAAAGAAAAAAAATCCCTGTGAAAAAGTACATAAAATGGAGAATTGAAGCTCTCCTTGGCTACATCTTGTGTGCACGTTTTGCCTTGCCTTGTTCTTGTTCCTGGCCTCCCTACTCTTTTTTTTTCGTTTGCACGATCATCGAGGTTTTACAGCCGTTGGATGGTGGATCCGACGGTGGTAACAGCGTTGGATGAAAATCTGAGGGGGTACTTTCGGGAGAGAGGGGCTAAACTCTCCCAAACACCCCCTGAAGCTGTTGGTTGCGAGATGGTTCTACTATTT] consensusID : consensus_7860#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 145 fasta sequence [GCTCTCCTCTCCTCATACTTAGCTTCACTCTCTTCCAAAACCTACACTAACTTAAGTCTCCAAGAAGGCAAGAGTCGCCGTCGCCGTCGCCGCCGCCACTCCANGCGCTCGCTAGCTAGAGCTGTGCACGATACAATAAGATGAN] [+] EMBL D43553 [GCTCTCCTCTCCTCATACTTAGCTTCACTCTCTTCCAAAACCTACACTAACTTAAGTCTCCAAGAAGGCAAGAGTCGCCGTCGCCGTCGCCGCCGCCACTCCANGCGCTCGCTAGCTAGAGCTGTGCACGATACAATAAGATGAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7860#0 TGCATGTATTAAACACAAAAGGCCACAGAGAAAGCCACCGAAATTGAGGCTATATAAGCT 60 consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 CACATCCACCTCACCCCAACCAAAGAGAAGATTTCATCAGTTCAGTTCAGACAGCTCTCC 120 consensus_7860#1 -----------------------------------------------------GCTCTCC 7 ******* consensus_7860#0 TCTCCTCACACTCAGCTTCACTCTCTTCCAAAACCCACACTAACCCAAGTCTCCAAGAAG 180 consensus_7860#1 TCTCCTCATACTTAGCTTCACTCTCTTCCAAAACCTACACTAACTTAAGTCTCCAAGAAG 67 ******** *** ********************** ******** ************** consensus_7860#0 GCAAGAGTCGCCGTCGCCGTCGCCGCCGGCCACGCCGTGTGCTAGCTAGCTAGAGCTGTG 240 consensus_7860#1 GCAAGAGTCGCCGTCGCCGTCGCCGCCG-CCACTCCANGCGCTCGCTAGCTAGAGCTGTG 126 **************************** **** ** * *** **************** consensus_7860#0 CACGATACAGTGTGCTGCGACCATGGCGGCCGCCGGAGCAGCGTTGCGGCTGCGCCTCCT 300 consensus_7860#1 CACGATACAATAAGATGAN----------------------------------------- 145 ********* * * ** consensus_7860#0 CTACCGGATGCTGCGGGTGGGCGAGCTCCTCGCGCTCGTGGTGTTCTTGTCGTGGTCTTC 360 consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 TTCCCGCGTGCCGGCCGCCGCCGCCGCCGTGGTGCGGCTCGCCGGGTCGCTCCTGCTCAA 420 consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 CGCCCGGTTCGTGTTCGTCCTCGGCAACGCCATCGTGCTCCTGCTCCTCGCGCTCTCCAG 480 consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 GCACGACCTCTCCATCTCTTCCAACCACGGCACCACCACCACCGCCGCCGCCGCCGCCGT 540 consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 CTCCAGCGACAGCGCTGGCGCCGGGTCCACGCCAGCGTCGACGACAGCGCCACCCGCCGC 600 consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 CAGCTTCCCTCTGTTCATCGTCCCGCAGCCATCACCGCCGCCGCCTCACGCCACCGAGGC 660 consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 CCCGGTGGTGGCAGCGCCTCCGGCGCCCGTGGTCCCCTGCGCCCCGTCGGTGGCGCCGGC 720 consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 AGCGCCGGCGGCGGCGGCGGCGTTCGAGGACAAGCAGGCGGTGCGCGTCAACAAGGCACG 780 consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 CGCGCCGAGGCGGAGCAGGTCGGAGAAGATGGGCTCGCGCGGCGCGTTCCGGCGGGCGGT 840 consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 GTCGCCGGAGCTGCGGCGGTCGGAGTCGGACAACGGGCGCAGGCGGCGGTCGTCGGTGAC 900 consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 GGCGCGCGACGCGGAGGTGTGCTGGGGCGCGGACGACGCGGAGGAGTTCCGGCGGACGGT 960 consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 GGAGGCGTCCATCGCCAAGCAAACGAGGTTCCACCGCGAGGAGTCGATGACCATGACCAT 1020 consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 GTCCATCGTCGCCGGCGTCGGCCACGGCGAGGTGGCGCCGGCCATCGCCGGAGCACTCGC 1080 consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 AGTCGTGGAATAAGTTGGCCTCACATGTCAGTGGAGAAAAAGAAAAAAAATCCCTGTGAA 1140 consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 AAAGTACATAAAATGGAGAATTGAAGCTCTCCTTGGCTACATCTTGTGTGCACGTTTTGC 1200 consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 CTTGCCTTGTTCTTGTTCCTGGCCTCCCTACTCTTTTTTTTTCGTTTGCACGATCATCGA 1260 consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 GGTTTTACAGCCGTTGGATGGTGGATCCGACGGTGGTAACAGCGTTGGATGAAAATCTGA 1320 consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 GGGGGTACTTTCGGGAGAGAGGGGCTAAACTCTCCCAAACACCCCCTGAAGCTGTTGGTT 1380 consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 GCGAGATGGTTCTACTATTT 1400 consensus_7860#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||