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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7862#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2076 fasta sequence
[TGAGAAAAACAAAGGAGTGAGCGTCGCCCATGAATCCGAGACTAATGGCCTGATTGACAATGACTCAGTAGTTGATCACGAGGAACAAAGAGAGCAGAATTCTGTAGAGGCCAGGAAAGAAGGCATGGTAGAGCTTAGTGTGTACAAAAAGTATGCAGCATTCGCGGGATGGTCAATTGCTTTTCTGATATGTCTAAGTGTGTTCTTAATGCAAGCATCTCGTAATGGCAATGATCTTTGGTTAACTTACTGGGTCGATACCAGCACAGCTTCCTCACGCACAATATTTTATCTGACTATCCTTGCTGCGTTTGGTGCATTGAACTCTTTTTTCACATTGGGAAGGGCGTTCTCTTTTGCATATGGTGGTCTCTGTGCAGCAATTCAAATACATGCTGATCTTCTTAATAATCTAATCGGTGCACCAGTTTCATTTTTTGACCAAAATCCTAGTGGCCGGATACTGAACAGATTATCCTCAGACCTATATGCCATTGATGATTCTCTTCCGTTTATCCTCAACATATTCGTGGCAAACTTCTTCAGCTTGCTTGGTACTCTGGTTGTAATATCTTATTCACAGGTTTCATTCTTACTGATCTTAGTTCCTCTCTGGCTTATCTACAGAAATGTACAGGAGCCGAATAGGTCTACATCACGTGAAGTACGACGACTTGACAGTGTTGCTCGTTCACCAATATATTCATCTTTTACAGAGACACTTGATGGTTCATCAACAATAAGAGCATTTCAAAAAGAAGGATTCTTCTTAGAAAGATTCATCCAACATGTGACACTATACCAGAAAACATCCTATTGTGAACTGGTTGCTGGTCTGTGGCTCTCATTGAGACTCCAGTTGTTGGCAGGTTTTATAATTCTGTTCATCGCCATTATGGCCATTGTTGGCTTCAATAGTAAATCTGTTATTAATTTTGGTACACCTGGACTGGTCGGCCTGGCGCTGTCATATGCCGCACCCGTTGTACCATTGTTGAATGGCTTCTTAACCACCTTTACAGAGACAGAAAAGGAAATGATTTCTGTTGAGAGAGTTGTTGAGTATGTTGGCATACCTCAAGAAGAACTTCATGGATCGGAATCCCCTCACAGTGGCTGGCCAACAGAGGGGAACATTGAGTTTGAGCGTGTTACTCTAAGGTACAAGGAGGATTTACCCCCGGCTTTGAATGATGTTTCGTTCTTTATTTCATCAGGCATGCAGGTTGGAATAATAGGGAGGACTGGAGCAGGCAAATCCAGTATACTGAATGCACTTCTTCGTTTAGCTCCAATCTGTAATGGCCGCATCTTAGTAGATGACTTTGATGTGGCCAAACTTGCTGTCCGAGATCTTCGTGGACATTTTGCAGTAGTCCCACAGAGCCCGTTTTTGTTCGATGGGTCTTTGAGGGAAAATCTAGACCCTTTTAATAGAACAACAGATCTCAGGATATGGGAAGCTCTTGATAAGTGTCATATGAAGACAGAGATTGAATCTATAGGTGGACTTGACATCCATGTGAAAGAAAGTGGTGCGTCTTTTTCAGTAGGTCAGAGACAACTCCTGTGTCTTGCCCGTGCTATCCTTAAATCATCCAAGATACTCTGCCTTGATGAATGCACAGCTAATGTTGACAATCAGACAGCCTCCTTGTTGCAAAATACTATTTCTGCTGAATGCAAAGGCATGACAGTTCTGACGATAGCACATCGAATTTCAACAGTGATGAAGATGGACAGTATTCTAGTTCTTGATCAAGGAAAATTGGTTGAAGAAGGAAACCCAGAGGTTCTTGTGGATGACAAATTCTCAAGATTCTCACGATTTGCCAAGGCATCTAACATGTGATTCTAGGTTAACATACTCTGATGGTCTAGTTTTTCTGCTAACTCCCCTTGAGCAGATGTACTAGACACGTTAGATCAGCTGCAATTTTACATCGATAGCTGGTAGGGAACATAAACTCTGATCATCTAGCTTATCATTAGTCATTGAAAAAGAGATTGAAGAAAATGTTTCTTTCCCTTGAAAAATTAAATTTGGGCTAATGTTCGATCAAAAAAAAAAAAAGA]
[+] EMBL CF322492 [TGAGAAAAACAAAGGAGTGAGCGTCGCCCATGAATCCGAGACTAATGGCCTGATTGACAATGACTCAGTAGTTGATCACGAGGAACAAAGAGAGCAGAATTCTGTAGAGGCCAGGAAAGAAGGCATGGTAGAGCTTAGTGTGTACAAAAAGTATGCAGCATTCGCGGGATGGTCAATTGCTTTTCTGATATGTCTAAGTGTGTTCTTAATGCAAGCATCTCGTAATGGCAATGATCTTTGGTTAACTTACTGGGTCGATACCAGCACAGCTTCCTCACGCACAATATTTTATCTGACTATCCTTGCTGCGTTTGGTGCATTGAACTCTTTTTTCACATTGGGAAGGGCGTTCTCTTTTGCATATGGTGGTCTCTGTGCAGCAATTCAAATACATGCTGATCTTCTTAATAATCTAATCGGTGCACCAGTTTCATTTTTTGACCAAAATCCTAGTGGCCGGATACTGAACAGATTATCCTCAGACCTATATGCCATTGATGATTCTCTTCCGTTTATCCTCAACATATTCGTGGCAAACTTCTTCAGCTTGCTTGGTACTCTGGTTGTAATATCTTATTCACAGGTTTCATTCTTACTGATCTTAGTTCCTCTCTGGCTTATCTACAGAAATGTACAGGAGCCGA ]
[+] EMBL CB674627 [ CTCACGCACAATATTTTATCTGACTATCCTTGCTGCGTTTGGTGCATTGAACTCTTTTTTCACATTGGGAAGGGCGTTCTCTTTTGCATATGGTGGTCTCTGTGCAGCAATTCAAATACATGCTGATCTTCTTAATAATCTAATCGGTGCACCAGTTTCATTTTTTGACCAAAATCCTAGTGGCCGGATACTGAACAGATTATCCTCAGACCTATATGCCATTGATGATTCTCTTCCGTTTATCCTCAACATATTCGTGGCAAACTTCTTCAGCTTGCTTGGTACTCTGGTTGTAATATCTTATTCACAGGTTTCATTCTTACTGATCTTAGTTCCTCTCTGGCTTATCTACAGAAATGTACAGTTCTATTATAGGTCTACATCACGTGAAGTACGACGACTTGACAGTGTTGCTCGTTCACCAATATATTCATCTTTTACAGAGACACTTGATGGTTCATCAACAATAAGAGCATTTCAAAAAGAAGGATTCTTCTTAGAAAGATTCATCCAACATGTGACACTATACCAGAAAACATCCTATTGTGAACTGGTTGCTGGTCTGTGGCTCTCATTGAGACTCCAGTTGTTGGCAGGTTTTATAATTCTGTTCATCGCCATTATGGCCATTGTTGGCTTCAATAGTAAATCTGTTATTAATTTTGGTACACCTGGACTGGTCGGCCTGGCGCTGTCATATGCCGCACCCGTTGTACCATTGTTGAATGGCTTCTTAACCACCTTTACAGAGACAGAAAAGGAAATG ]
[+] EMBL C26306 [ GTCGGCCTGGCGCTGTCATATGCCGCACCCGTTGTACCATTGTTGAATGGCTTCTTAACCACCTTTACAGAGACAGAAAAGGAAATNATTTCTGTTGAGAGAGTTGTTGAGTATGTTGGCATACCTCAAGAAGAACTTCATGGATCGGAATCCCCTCACAGTGGCTGGCCAACAGAGGGGAACATTGAGTTTGAGCGTGTTACTCTAAGGTACAAGGAGGATTTACCCCCGGCTTTGAATGATGTTTCGTTCTTTATTTCATCAGGCATGCAGGTTGGAATAATAGGGAGGACTGGAGCAGGCAAATCCAGTATACTGAATGCACTTCTTCGTTTAGCTCCAATCTGTAATGGCCGCATCTTAGTA ]
[-] EMBL CB674628 [ CCAGTATACTGAATGCACTTCTTCGTTTAGCTCCAATCTGTAATGGCCGCATCTTAGTAGATGACTTTGATGTGGCCAAACTTGCTGTCCGAGATCTTCGTGGACATTTTGCAGTAGTCCCACAGAGCCCGTTTTTGTTCGATGGGTCTTTGAGGGAAAATCTAGACCCTTTTAATAGAACAACAGATCTCAGGATATGGGAAGCTCTTGATAAGTGTCATATGAAGACAGAGATTGAATCTATAGGTGGACTTGACATCCATGTGAAAGAAAGTGGTGCGTCTTTTTCAGTAGGTCAGAGACAACTCCTGTGTCTTGCCCGTGCTATCCTTAAATCATCCAAGATACTCTGCCTTGATGAATGCACAGCTAATGTTGACAATCAGACAGCCTCCTTGTTGCAAAATACTATTTCTGCTGAATGCAAAGGCATGACAGTTCTGACGATAGCACATCGAATTTCAACAGTGATGAAGATGGACAGTATTCTAGTTCTTGATCAAGGAAAATTGGTTGAAGAAGGAAACCCAGAGGTTCTTGTGGATGACAAATTCTCAAGATTCTCACGATTTGCCAAGGCATCTAACATGTGATTCTAGGTTAACATACTCTGATGGTCTAGTTTTTCTGCTAACTCCCCTTGAGCAGATGTACTAGACACGTTAGATCAGCTGCAATTTTACATCGATAGCTGGTAGGGAACATAAACTCTGATCATCTAGCTTATCATTAGTCATTGAAAAAGAGATTGAAGAAAATGTTTCTTTCCCTTGAAAAATTAAATTTGGGCTAATGTTCGATCAAAAAAAAAAAAAGA]
consensusID : consensus_7862#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 820 fasta sequence
[ATGGCCCGCATCTTAGTAAGATGNCCTTTNATGTGGCCCAAANCTTGCCTGTCCCGAGGATCTCCGTGGACATTTTGCCAGTAGTCCCACCGGACCCCGTTTTTGTTCNATGGGTCCTTTGAGGGAAAATCTAGNCCCTTTTAATGGAACNACCAGATCTCCAGGTTATGGGAAGCTCTTGATAAGTGTCATATGAAGACAGAGATTGAATCTATAGGTGGACTTGACCATCCATGTGAAAGAAAGTGGTGCGTCTTTTTCAGTAGGTCAGAGACAACTCCTGTGTCTTGCCCGTGCTATCCTTAAATCATCCAAGATACTCTGCCTTGATGAATGCACAGCTAATGTTGACAATCAGACAGCCTCCTTGTTGCAAAATACTATTTCTGCTGAATGCAAAGGCATGACAGTTCTGACGATAGCACATCGAATTTCAACAGTGATGAAGATGGACAGTATTCTAGTTCTTGATCAAGGAAAATTGGTTGAAGAAGGAAACCCAGAGGTTCTTGTGGATGACAAATTCTCAAGATTCTCACGATTTGCCAAGGCATCTAACATGTGATTCTAGGTTAACATACTCTGATGGTCTAGTTTTTCTGCTAACTCCCCTTGAGCAGATGTACTAGACACGTTAGATCAGCTGCAATTTTACATCGATAGCTGGTAGGGAACATAAACTCTGATCATCTAGCTTATCATTAGTCATTGAAAAAGAGATTGAAGAAAATGTTTCTTTCCCTTGAAAAATTAAATTTGGGCTAATGTTCGATCCGGATGATTGCAAAATTGATTGATCACTGAAAGGGAAAAAAAAAAA]
[+] EMBL AU100690 [ATGGCCCGCATCTTAGTAAGATGNCCTTTNATGTGGCCCAAANCTTGCCTGTCCCGAGGATCTCCGTGGACATTTTGCCAGTAGTCCCACCGGACCCCGTTTTTGTTCNATGGGTCCTTTGAGGGAAAATCTAGNCCCTTTTAATGGAACNACCAGATCTCCAGGTTATGGGAAGCTCTTGATAAGTGTCATATGAAGACAGAGATTGAATCTATAGGTGGACTTGACCATCCATGTGAAAGAAAGTGGTGCGTCTTTTTCAGTAGGTCAGAGACAACTCCTGTGTCTTGCCCGTGCTATCCTTAAATCATCCAAGATACTCTGCCTTGATGAATGCACAGCTAATGTTGACAATCAGACAGCCTCCTTGTTGCAAAATACTATTTCTGCTGAATGCAAAGGCATGACAGTTCTGACGATAGCACATCGAATTTCAACAGTGATGAAGATGGACAGTATTCTAGTTCTTGATCAAGGAAAATTGGTTGAAGAAGGAAACCCAGAGGTTCTTGTGGATGACAAATTCTCAAGATTCTCACGATTTGCCAAGGCATCTAACATGTGATTCTAGGTTAACATACTCTGATGGTCTAGTTTTTCTGCTAACTCCCCTTGAGCAGATGTACTAGACACGTTAGATCAGCTGCAATTTTACATCGATAGCTGGTAGGGAACATAAACTCTGATCATCTAGCTTATCATTAGTCATTGAAAAAGAGATTGAAGAAAATGTTTCTTTCCCTTGAAAAATTAAATTTGGGCTAATGTTCGATCCGGATGATTGCAAAATTGATTGATCACTGAAAGGGAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7862#0 TGAGAAAAACAAAGGAGTGAGCGTCGCCCATGAATCCGAGACTAATGGCCTGATTGACAA 60
consensus_7862#1 ------------------------------------------------------------
consensus_7862#0 TGACTCAGTAGTTGATCACGAGGAACAAAGAGAGCAGAATTCTGTAGAGGCCAGGAAAGA 120
consensus_7862#1 ------------------------------------------------------------
consensus_7862#0 AGGCATGGTAGAGCTTAGTGTGTACAAAAAGTATGCAGCATTCGCGGGATGGTCAATTGC 180
consensus_7862#1 ------------------------------------------------------------
consensus_7862#0 TTTTCTGATATGTCTAAGTGTGTTCTTAATGCAAGCATCTCGTAATGGCAATGATCTTTG 240
consensus_7862#1 ------------------------------------------------------------
consensus_7862#0 GTTAACTTACTGGGTCGATACCAGCACAGCTTCCTCACGCACAATATTTTATCTGACTAT 300
consensus_7862#1 ------------------------------------------------------------
consensus_7862#0 CCTTGCTGCGTTTGGTGCATTGAACTCTTTTTTCACATTGGGAAGGGCGTTCTCTTTTGC 360
consensus_7862#1 ------------------------------------------------------------
consensus_7862#0 ATATGGTGGTCTCTGTGCAGCAATTCAAATACATGCTGATCTTCTTAATAATCTAATCGG 420
consensus_7862#1 ------------------------------------------------------------
consensus_7862#0 TGCACCAGTTTCATTTTTTGACCAAAATCCTAGTGGCCGGATACTGAACAGATTATCCTC 480
consensus_7862#1 ------------------------------------------------------------
consensus_7862#0 AGACCTATATGCCATTGATGATTCTCTTCCGTTTATCCTCAACATATTCGTGGCAAACTT 540
consensus_7862#1 ------------------------------------------------------------
consensus_7862#0 CTTCAGCTTGCTTGGTACTCTGGTTGTAATATCTTATTCACAGGTTTCATTCTTACTGAT 600
consensus_7862#1 ------------------------------------------------------------
consensus_7862#0 CTTAGTTCCTCTCTGGCTTATCTACAGAAATGTACAGGAGCCGAATAGGTCTACATCACG 660
consensus_7862#1 ------------------------------------------------------------
consensus_7862#0 TGAAGTACGACGACTTGACAGTGTTGCTCGTTCACCAATATATTCATCTTTTACAGAGAC 720
consensus_7862#1 ------------------------------------------------------------
consensus_7862#0 ACTTGATGGTTCATCAACAATAAGAGCATTTCAAAAAGAAGGATTCTTCTTAGAAAGATT 780
consensus_7862#1 ------------------------------------------------------------
consensus_7862#0 CATCCAACATGTGACACTATACCAGAAAACATCCTATTGTGAACTGGTTGCTGGTCTGTG 840
consensus_7862#1 ------------------------------------------------------------
consensus_7862#0 GCTCTCATTGAGACTCCAGTTGTTGGCAGGTTTTATAATTCTGTTCATCGCCATTATGGC 900
consensus_7862#1 ------------------------------------------------------------
consensus_7862#0 CATTGTTGGCTTCAATAGTAAATCTGTTATTAATTTTGGTACACCTGGACTGGTCGGCCT 960
consensus_7862#1 ------------------------------------------------------------
consensus_7862#0 GGCGCTGTCATATGCCGCACCCGTTGTACCATTGTTGAATGGCTTCTTAACCACCTTTAC 1020
consensus_7862#1 ------------------------------------------------------------
consensus_7862#0 AGAGACAGAAAAGGAAATGATTTCTGTTGAGAGAGTTGTTGAGTATGTTGGCATACCTCA 1080
consensus_7862#1 ------------------------------------------------------------
consensus_7862#0 AGAAGAACTTCATGGATCGGAATCCCCTCACAGTGGCTGGCCAACAGAGGGGAACATTGA 1140
consensus_7862#1 ------------------------------------------------------------
consensus_7862#0 GTTTGAGCGTGTTACTCTAAGGTACAAGGAGGATTTACCCCCGGCTTTGAATGATGTTTC 1200
consensus_7862#1 ------------------------------------------------------------
consensus_7862#0 GTTCTTTATTTCATCAGGCATGCAGGTTGGAATAATAGGGAGGACTGGAGCAGGCAAATC 1260
consensus_7862#1 ------------------------------------------------------------
consensus_7862#0 CAGTATACTGAATGCACTTCTTCGTTTAGCTCCAATCTGTAATGGCC-GCATCTTAGTA- 1318
consensus_7862#1 -----------------------------------------ATGGCCCGCATCTTAGTAA 19
****** ***********
consensus_7862#0 GATGAC-TTTGATGTGGCC--AAACTTGC-TGTCC--GAGATCTTCGTGGACATTTTGC- 1371
consensus_7862#1 GATGNCCTTTNATGTGGCCCAAANCTTGCCTGTCCCGAGGATCTCCGTGGACATTTTGCC 79
**** * *** ******** ** ***** ***** ***** **************
consensus_7862#0 AGTAGTCCCAC-AGAGCCCGTTTTTGTTCGATGGGTC-TTTGAGGGAAAATCTAGACCCT 1429
consensus_7862#1 AGTAGTCCCACCGGACCCCGTTTTTGTTCNATGGGTCCTTTGAGGGAAAATCTAGNCCCT 139
*********** ** ************* ******* ***************** ****
consensus_7862#0 TTTAATAGAACAAC-AGATCTC-AGGATATGGGAAGCTCTTGATAAGTGTCATATGAAGA 1487
consensus_7862#1 TTTAATGGAACNACCAGATCTCCAGGTTATGGGAAGCTCTTGATAAGTGTCATATGAAGA 199
****** **** ** ******* *** *********************************
consensus_7862#0 CAGAGATTGAATCTATAGGTGGACTTGAC-ATCCATGTGAAAGAAAGTGGTGCGTCTTTT 1546
consensus_7862#1 CAGAGATTGAATCTATAGGTGGACTTGACCATCCATGTGAAAGAAAGTGGTGCGTCTTTT 259
***************************** ******************************
consensus_7862#0 TCAGTAGGTCAGAGACAACTCCTGTGTCTTGCCCGTGCTATCCTTAAATCATCCAAGATA 1606
consensus_7862#1 TCAGTAGGTCAGAGACAACTCCTGTGTCTTGCCCGTGCTATCCTTAAATCATCCAAGATA 319
************************************************************
consensus_7862#0 CTCTGCCTTGATGAATGCACAGCTAATGTTGACAATCAGACAGCCTCCTTGTTGCAAAAT 1666
consensus_7862#1 CTCTGCCTTGATGAATGCACAGCTAATGTTGACAATCAGACAGCCTCCTTGTTGCAAAAT 379
************************************************************
consensus_7862#0 ACTATTTCTGCTGAATGCAAAGGCATGACAGTTCTGACGATAGCACATCGAATTTCAACA 1726
consensus_7862#1 ACTATTTCTGCTGAATGCAAAGGCATGACAGTTCTGACGATAGCACATCGAATTTCAACA 439
************************************************************
consensus_7862#0 GTGATGAAGATGGACAGTATTCTAGTTCTTGATCAAGGAAAATTGGTTGAAGAAGGAAAC 1786
consensus_7862#1 GTGATGAAGATGGACAGTATTCTAGTTCTTGATCAAGGAAAATTGGTTGAAGAAGGAAAC 499
************************************************************
consensus_7862#0 CCAGAGGTTCTTGTGGATGACAAATTCTCAAGATTCTCACGATTTGCCAAGGCATCTAAC 1846
consensus_7862#1 CCAGAGGTTCTTGTGGATGACAAATTCTCAAGATTCTCACGATTTGCCAAGGCATCTAAC 559
************************************************************
consensus_7862#0 ATGTGATTCTAGGTTAACATACTCTGATGGTCTAGTTTTTCTGCTAACTCCCCTTGAGCA 1906
consensus_7862#1 ATGTGATTCTAGGTTAACATACTCTGATGGTCTAGTTTTTCTGCTAACTCCCCTTGAGCA 619
************************************************************
consensus_7862#0 GATGTACTAGACACGTTAGATCAGCTGCAATTTTACATCGATAGCTGGTAGGGAACATAA 1966
consensus_7862#1 GATGTACTAGACACGTTAGATCAGCTGCAATTTTACATCGATAGCTGGTAGGGAACATAA 679
************************************************************
consensus_7862#0 ACTCTGATCATCTAGCTTATCATTAGTCATTGAAAAAGAGATTGAAGAAAATGTTTCTTT 2026
consensus_7862#1 ACTCTGATCATCTAGCTTATCATTAGTCATTGAAAAAGAGATTGAAGAAAATGTTTCTTT 739
************************************************************
consensus_7862#0 CCCTTGAAAAATTAAATTTGGGCTAATGTTCGATCAAAAAAAAAAAAAGA---------- 2076
consensus_7862#1 CCCTTGAAAAATTAAATTTGGGCTAATGTTCGATCCGGATGATTGCAAAATTGATTGATC 799
*********************************** * * ** *
consensus_7862#0 ---------------------
consensus_7862#1 ACTGAAAGGGAAAAAAAAAAA 820
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||