These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7866#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 871 fasta sequence [CGAGACAAGGGGAGAGAGAGAGAGAGATAGGGGGGGAGATCGAAGAGATGCGCCTTGCGCACTATGTGACAATTGGTTCAGAATGCACTGCATCACTTGCTAAATATCTTGACAAGCTGAAGAGATCTGAAATCGGTTGGGATGTAAGGGTCGCACTTGGCGTGTATGGTTCCTTCAGCAGTAGAGCCTACCTGAATTCGCAACGGCTCCGGAATCGTCAGATGTACTTCCACAA-GGAGATATTC-AAGACGGCAGACGTGATCGTCTCACCAATGACCGGTGTGACTGCCTACAAGCTGCAAGACGACGCGCTAAAAAGCGGAGAACTGGACTACATAAATGGAGCCGCGTTGGTCCGGTACTCAATTGCAGGAAACTTCCTTGGTTTGCCGGCCATCACCGTCATGGTTGGGTATGACAAAGCCGGGCTGCCCATCGGCCTCCAGTTCATCGGCAGGCCGTGGTCCGAGGCGACTCTGCTCCACATAGCATTTGCAATGCAGGAGGCGTGCAAGAAGCA-CTACAAGAAGCCTGAAGTGTTCTACGATCTCCTCAAGAAAGATTAAATCCGTAGGCTGTATGTATGTCAGAATTCAGAAAATTCAGATCATTGCTTCGATCAAGTCTCCAACATTGAAGAGAATCCATTTTAAGTTAGCAC-GGAAGCTGTTCT-TCCATTTGTGTCA-GGGAGAACAATGTAGCTACATGACCAGAAGGACGAGAGCAAAATTAGATCAATTGCAGAAACTGTTTGATTAGCGGACCAAAAATTAAGTGAAAATGTATGCATTATATGACAAATAGTTTCTGTATGATGGTGCCAAAAAAAAGGGCAAAAATATATATGTGTGAAATTTTAGTAGCAAAAAAA] [+] EMBL CA767384 [CGAGACAAGGGGAGAGAGAGAGAGAGATAGGGGGGGAGATCGAAGAGATGCGCCTTGCGCACTATGTGACAATTGGTTCAGAATGCACTGCATCACTTGCTAAATATCTTGACAAGCTGAAGAGATCTGAAATCGGTTGGGATGTAAGGGTCGCACTTGGCGTGTATGGTTCCTTCAGCAGTAGAGCCTACCTGAATTCGCAACGGCTCCGGAATCGTCAGATGTACTTCCACAA GGAGATATTC AAGACGGCAGACGTGATCGTCTCACCAATGACCGGTGTGACTGCCTACAAGCTGCAAGACGACGCGCTAAAAAGCGGAGAACTGGACTACATAAATGGAGCCGCGTTGGTCCGGTACTCAATTGCAGGAAACTTCCTTGGTTTGCCGGCCATCACCGTCATGGTTGGGTATGACAAAGCCGGGCTGCCCATCGGCCTCCAGTTCATCGGCAGGCCGTGGTCCGAGGCGACCCTGCTCCACATAGCATTTGCAATGCAGGAGGCGTGCAAGAAGCA CTACAAGAAGCCTGAAGTGTTCTACGATCTCCTCAAGAAAGATTAAATCCGTAGGCTGTATGTATGTCAGAATTCAGAAAATTCAGATCATTGCTTCGATCAAGTCTCCAACATTGAAGAGAATCCATTTTAAGTTAGCACGGGAAGCTGNTCT TCCATTTGTGTCANGGGAGAACAATGTAGCTACATGACCAGAAGGACGAGAGCAAAATTAGATCAATTGCAGAAACTGNTTGATTAGCGGACCAAAAATTAAGTGAAAATGTATGC ] [+] EMBL CB238487 [ GCGCCCTGCGCACTATGTGACAATTGGTTCAGAATGCACTGCATCACTTGCTAAATATCTTGACAAGCTGAAGAGATCTGAAATCGGTTGCGATGTAAGGGTCGCACTTGGCGTGTATGGTTCCTTCAGCAGTAGAGCCTACCTGAATTCGCAACGGCTCCGGAATCGTCAGATGTACTTCCACAAGGGAGATATTCAAAGACGGCAGACGTGATCGTCTCACCAATGACCGGTGTGACTGCCTACAAGCTGCAAGACGACGCGCTAAAAAGCGGAGAA TATCCTACATAAATGGAGCCGCGTTGGTCCGGTACTCAATTGCAGGAAACTTCCTTGGTTTGCCGGCCATCACCGTCATGGTTGGGTATGACAAAGCCGGGCTGCCCATCGGCCTCCAGTTCATCGGCAGGCCGTGGTCCGAGGCGACTCTGCTCCACATAGCATTTGCAATGCAGGAGGCGTGCAAGAAGCA CTACAAGAAGCCTGAAGTGTTCTACGATCTCCTCAAGAAAGATTAAATCCGTAGGCTGTATGTATGTCAGAATTCAGAAAATTCAG ] [-] EMBL CB684670 [ CAGAATGCACTGCATCACTTGTTAAATATCTTGACAAGCTGAAGAGATCTGAAATCGGTTGGGATGTAAGGGTCGCACTTGGCGTGTATGGTTCCTTCAGCAGTAGAGCCTACCTGAATTCGCAACGGCTCCGGAATCGTCAGATGTACTTCCACAA GGAGATATTC AAGACGGCAGACGTGATCGTCTCACCAATGACCGGTGTGACTGCCTACAAGCTGCAAGACGACGCGCTAAAAAGCGGAGAACTGGACTACATAAATGGAGCCGCGTTGGTCCGGTACTCAATTGCAGGAAACTTCCTTGGTTTGCCGGCCATCACCGTCATGGTTGGGTATGACAAAGCCGGGCTGCCCATCGGCCTCCAGTTCATCGGCAGGCCGTGGTCCGAGGCGACTCTGCTCCACATAGCATTTGCAATGCAGGAGGCGTGCAAGAAGCA CTACAAGAAGCCTGAAGTGTTTTACGATCTCCTCAAGAAAGATTAAATCCGTAGGCTGTATGTATGTCAGAATTCAGAAAATTCAGATCATTGCTTCGATCAAGTCTCCAACATTGAAGAGAATCCATTTTAAGTTAGCAC GGAAGCTGTTCT TCCATTTGTGTCA GGGAGAACAATGTAGCTACATGACCAGAAGGACGAGAGCAAAATTAGATCAATTGCAGAAACTGTTTGATTAGCGGAACAAAAATTAAGTGAAAATGTATGCATTATATGACAAATAGTTTCTGTATGATGGTGCCAAAAAAAAGGGCAAAAATATATATGTGTGAAATTTTAGTAG ] [+] EMBL BM420357 [ TCGGCA GCCGTGGTCCGAGGCGACTCTGCTCCACATAGCATTTGC ATGCAGGAGGCGTGCAAGAAGCACCTACAAGAAGCCTGAAGTGTTCTACGATCTCCTCAAGAAAGATTAAATCCGTAGGCTGTATGTATGTCAGAATTCAGAAAATTCAGATCATTGCTTCGATCAAGTCTCC ACATTGAAGAGAATCCATTTTAAGTTAGCAC GGAAGCTGTTCTCTCCATTTGTGTCA GGGAGAACCATGTAGCTACATGACCAGAAGGACGAGAGCAAAATTAGATCAATTGCAGAAACTGTTTGATTAGCGGACC AAAATTAAGTGAAAATGTATGCATTATATGAC AATAGTTTCTGTATGATGGTGCCAAAAAAA GGC AAAATATATATGTGTGAAATTTTAGTAGCAAAAAAA] consensusID : consensus_7866#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence [TGTTTAGGTAGCCCGAGGACGAGGCAAGGAGTTTTCAAACGGGCAGACGTGATCGTCTCACCAATGCCCGGTGTGGCTGCCTACAAGTTGCAAGGCGACGCGTTAAAAAGCGGAGAACTGGACTACATAAATGGAGCCGCGTTGGTCCGGTACTCAATTGCAGGAAACTTCCTTGGTTTGCCGGCCATTACCGTCATGGTTGGGTATGACAAAGCCGGGCTGCCCATCGGCCTCCAGTCCATCGGCAGGCCGTGGTCCGAGGCGACTTTGCTCCACATAGCATTTGCAATGCAGGAGGCGTGCAAGAAGCACTACAAGAAGCCTGAAGTGTTTTACGATCTCCTCAAGAAAGATTAAATCCGTAGGCTGTATGTATGTCAGAATTCAGAAAATTCAGATCATTGCTTCGATCAAGTTTCCAACATTGAAGAGAATCCATTTTAAGTTAGCACGGAAGCTGTTTTTCCATTTGTGTCAGGGAGAACAATGTAGCTACATGACCAGAAGGACGAGAGCAAAATTAGATCAATTGCAGAAACTGTTTGATTAGCGGACCAAAAATTAAGTGAAAATGTATGCATTATATGACAAATAGTTTCTGTATGATGGTGCCAAAAAAAGGGCAAAAATATATATGTGTGAAATTTTAGTAGCAAAAAAAAAAAAAAAA] [-] EMBL CA759666 [TGTTTAGGTAGCCCGAGGACGAGGCAAGGAGTTTTCAAACGGGCAGACGTGATCGTCTCACCAATGCCCGGTGTGGCTGCCTACAAGTTGCAAGGCGACGCGTTAAAAAGCGGAGAACTGGACTACATAAATGGAGCCGCGTTGGTCCGGTACTCAATTGCAGGAAACTTCCTTGGTTTGCCGGCCATTACCGTCATGGTTGGGTATGACAAAGCCGGGCTGCCCATCGGCCTCCAGTCCATCGGCAGGCCGTGGTCCGAGGCGACTTTGCTCCACATAGCATTTGCAATGCAGGAGGCGTGCAAGAAGCACTACAAGAAGCCTGAAGTGTTTTACGATCTCCTCAAGAAAGATTAAATCCGTAGGCTGTATGTATGTCAGAATTCAGAAAATTCAGATCATTGCTTCGATCAAGTTTCCAACATTGAAGAGAATCCATTTTAAGTTAGCACGGAAGCTGTTTTTCCATTTGTGTCAGGGAGAACAATGTAGCTACATGACCAGAAGGACGAGAGCAAAATTAGATCAATTGCAGAAACTGTTTGATTAGCGGACCAAAAATTAAGTGAAAATGTATGCATTATATGACAAATAGTTTCTGTATGATGGTGCCAAAAAAAGGGCAAAAATATATATGTGTGAAATTTTAGTAGCAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7866#0 CGAGACAAGGGGAGAGAGAGAGAGAGATAGGGGGGGAGATCGAAGAGATGCGCCTTGCGC 60 consensus_7866#1 ------------------------------------------------------------ consensus_7866#0 ACTATGTGACAATTGGTTCAGAATGCACTGCATCACTTGCTAAATATCTTGACAAGCTGA 120 consensus_7866#1 ------------------------------------------------------------ consensus_7866#0 AGAGATCTGAAATCGGTTGGGATGTAAGGGTCGCACTTGGCGTGTATGGTTCCTTCAGCA 180 consensus_7866#1 ------------------------------------------------------------ consensus_7866#0 GTAGAGCCTACCTGAATTCGCAACGGCTCCGGAATCGTCAGATGTACTTCCACAAGGAGA 240 consensus_7866#1 -----------------------TGTTTAGGTAGCCCGAGGACGAG-----GCAAGGAG- 31 * * * * * ** * ******* consensus_7866#0 TATTCAAGACGGCAGACGTGATCGTCTCACCAATGACCGGTGTGACTGCCTACAAGCTGC 300 consensus_7866#1 TTTTCAAACGGGCAGACGTGATCGTCTCACCAATGCCCGGTGTGGCTGCCTACAAGTTGC 91 * ***** ************************* ******** *********** *** consensus_7866#0 AAGACGACGCGCTAAAAAGCGGAGAACTGGACTACATAAATGGAGCCGCGTTGGTCCGGT 360 consensus_7866#1 AAGGCGACGCGTTAAAAAGCGGAGAACTGGACTACATAAATGGAGCCGCGTTGGTCCGGT 151 *** ******* ************************************************ consensus_7866#0 ACTCAATTGCAGGAAACTTCCTTGGTTTGCCGGCCATCACCGTCATGGTTGGGTATGACA 420 consensus_7866#1 ACTCAATTGCAGGAAACTTCCTTGGTTTGCCGGCCATTACCGTCATGGTTGGGTATGACA 211 ************************************* ********************** consensus_7866#0 AAGCCGGGCTGCCCATCGGCCTCCAGTTCATCGGCAGGCCGTGGTCCGAGGCGACTCTGC 480 consensus_7866#1 AAGCCGGGCTGCCCATCGGCCTCCAGTCCATCGGCAGGCCGTGGTCCGAGGCGACTTTGC 271 *************************** **************************** *** consensus_7866#0 TCCACATAGCATTTGCAATGCAGGAGGCGTGCAAGAAGCACTACAAGAAGCCTGAAGTGT 540 consensus_7866#1 TCCACATAGCATTTGCAATGCAGGAGGCGTGCAAGAAGCACTACAAGAAGCCTGAAGTGT 331 ************************************************************ consensus_7866#0 TCTACGATCTCCTCAAGAAAGATTAAATCCGTAGGCTGTATGTATGTCAGAATTCAGAAA 600 consensus_7866#1 TTTACGATCTCCTCAAGAAAGATTAAATCCGTAGGCTGTATGTATGTCAGAATTCAGAAA 391 * ********************************************************** consensus_7866#0 ATTCAGATCATTGCTTCGATCAAGTCTCCAACATTGAAGAGAATCCATTTTAAGTTAGCA 660 consensus_7866#1 ATTCAGATCATTGCTTCGATCAAGTTTCCAACATTGAAGAGAATCCATTTTAAGTTAGCA 451 ************************* ********************************** consensus_7866#0 CGGAAGCTGTTCTTCCATTTGTGTCAGGGAGAACAATGTAGCTACATGACCAGAAGGACG 720 consensus_7866#1 CGGAAGCTGTTTTTCCATTTGTGTCAGGGAGAACAATGTAGCTACATGACCAGAAGGACG 511 *********** ************************************************ consensus_7866#0 AGAGCAAAATTAGATCAATTGCAGAAACTGTTTGATTAGCGGACCAAAAATTAAGTGAAA 780 consensus_7866#1 AGAGCAAAATTAGATCAATTGCAGAAACTGTTTGATTAGCGGACCAAAAATTAAGTGAAA 571 ************************************************************ consensus_7866#0 ATGTATGCATTATATGACAAATAGTTTCTGTATGATGGTGCCAAAAAAAAGGGCAAAAAT 840 consensus_7866#1 ATGTATGCATTATATGACAAATAGTTTCTGTATGATGGTGCCAAAAAAA-GGGCAAAAAT 630 ************************************************* ********** consensus_7866#0 ATATATGTGTGAAATTTTAGTAGCAAAAAAA--------- 871 consensus_7866#1 ATATATGTGTGAAATTTTAGTAGCAAAAAAAAAAAAAAAA 670 ******************************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||